Wall clock time and date at job start Mon Mar 30 2020 01:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38235 * 120.00094 * 2 1 4 4 C 1.50706 * 119.99802 * 359.97438 * 3 2 1 5 5 C 1.38231 * 120.00255 * 180.25479 * 3 2 1 6 6 C 1.50697 * 120.00291 * 179.72666 * 5 3 2 7 7 C 1.38241 * 119.99999 * 359.53571 * 5 3 2 8 8 C 1.50694 * 120.00221 * 180.21527 * 7 5 3 9 9 N 1.46501 * 109.47040 * 270.20727 * 8 7 5 10 10 C 1.34773 * 120.00352 * 180.02562 * 9 8 7 11 11 O 1.21691 * 119.99744 * 359.97438 * 10 9 8 12 12 C 1.46373 * 120.00257 * 179.97438 * 10 9 8 13 13 H 1.08000 * 120.00260 * 359.97438 * 12 10 9 14 14 C 1.40050 * 119.99967 * 179.97438 * 12 10 9 15 15 N 1.30674 * 120.00219 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00075 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46654 * 60.00506 * 16 14 12 18 18 H 1.48504 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47209 * 300.00409 * 16 14 12 20 20 C 1.38237 * 119.99620 * 0.42119 * 7 5 3 21 21 C 1.50696 * 119.99806 * 179.79163 * 20 7 5 22 22 C 1.38235 * 120.00049 * 179.97438 * 2 1 3 23 23 C 1.50701 * 119.99888 * 0.02562 * 22 2 1 24 24 H 1.09004 * 109.47322 * 90.00070 * 1 2 3 25 25 H 1.09001 * 109.47684 * 209.99735 * 1 2 3 26 26 H 1.09000 * 109.47540 * 330.00376 * 1 2 3 27 27 H 1.09001 * 109.46953 * 89.99956 * 4 3 2 28 28 H 1.09000 * 109.47318 * 209.99554 * 4 3 2 29 29 H 1.09000 * 109.47161 * 330.00185 * 4 3 2 30 30 H 1.09001 * 109.47221 * 90.00062 * 6 5 3 31 31 H 1.09001 * 109.47299 * 209.99730 * 6 5 3 32 32 H 1.08995 * 109.46930 * 330.00248 * 6 5 3 33 33 H 1.09004 * 109.46997 * 30.20544 * 8 7 5 34 34 H 1.08996 * 109.47380 * 150.20364 * 8 7 5 35 35 H 0.97008 * 119.99829 * 359.97438 * 9 8 7 36 36 H 0.96996 * 120.00325 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47161 * 270.02107 * 21 20 7 38 38 H 1.09003 * 109.47253 * 30.02055 * 21 20 7 39 39 H 1.09003 * 109.46897 * 150.02028 * 21 20 7 40 40 H 1.08997 * 109.47372 * 90.00153 * 23 22 2 41 41 H 1.09005 * 109.46390 * 210.00161 * 23 22 2 42 42 H 1.08992 * 109.46973 * 329.99329 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 1.4446 2.5023 -0.0006 5 6 3.5804 1.1972 -0.0053 6 6 4.3339 2.5022 -0.0115 7 6 4.2717 0.0000 -0.0009 8 6 5.7786 0.0000 -0.0018 9 7 6.2661 -0.0005 -1.3834 10 6 7.5910 -0.0011 -1.6305 11 8 8.3824 -0.0007 -0.7061 12 6 8.0780 -0.0022 -3.0109 13 1 7.3758 -0.0029 -3.8313 14 6 9.4548 -0.0023 -3.2676 15 7 10.3046 -0.0019 -2.2750 16 14 10.0764 -0.0044 -5.0292 17 1 9.5808 1.2073 -5.7303 18 1 11.5614 -0.0035 -5.0301 19 1 9.5811 -1.2177 -5.7274 20 6 3.5805 -1.1971 0.0000 21 6 4.3340 -2.5022 0.0000 22 6 2.1981 -1.1971 0.0005 23 6 1.4446 -2.5022 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.2625 2.8171 1.0270 28 1 2.0339 3.2619 -0.5143 29 1 0.4924 2.3718 -0.5147 30 1 4.5196 2.8195 1.0146 31 1 5.2844 2.3706 -0.5287 32 1 3.7429 3.2605 -0.5250 33 1 6.1423 0.8903 0.5114 34 1 6.1423 -0.8897 0.5121 35 1 5.6353 -0.0011 -2.1203 36 1 11.2581 -0.0023 -2.4528 37 1 4.5154 -2.8170 -1.0277 38 1 5.2866 -2.3717 0.5135 39 1 3.7451 -3.2617 0.5142 40 1 1.2633 -2.8172 -1.0271 41 1 2.0336 -3.2617 0.5148 42 1 0.4921 -2.3718 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335445236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:44 Heat of formation + Delta-G solvation = -60.167201 kcal Electronic energy + Delta-G solvation = -21413.648446 eV Core-core repulsion = 18356.565632 eV Total energy + Delta-G solvation = -3057.082814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34645 -39.28899 -36.35373 -35.90308 -34.67023 -33.66763 -30.60258 -30.25856 -29.43782 -28.39495 -27.16193 -25.08155 -24.80453 -21.81927 -20.58831 -20.39787 -19.13573 -17.91134 -17.47246 -16.42853 -16.09897 -15.64793 -15.51012 -15.25650 -14.73148 -14.62783 -14.30324 -14.18261 -14.12888 -13.85890 -13.57453 -13.54744 -13.43095 -13.23144 -13.10564 -13.01228 -12.81306 -12.64347 -12.61881 -12.46683 -12.07242 -11.99038 -11.80954 -11.53879 -11.49817 -10.92681 -9.96643 -9.48031 -9.22364 -9.13863 -8.28938 -6.86746 0.35301 0.44923 1.38918 1.42647 1.54341 2.24208 2.46471 2.62649 3.34758 3.59848 3.75135 3.82228 3.95306 3.98666 4.15181 4.19907 4.49422 4.53963 4.57251 4.61091 4.66805 4.67458 4.70243 4.74231 4.77828 4.83119 4.86817 4.97318 5.07289 5.08650 5.13834 5.16123 5.24575 5.30250 5.43285 5.54259 5.68858 5.71459 5.86256 5.86490 6.17335 6.20734 6.26543 6.85517 7.52524 8.47846 8.66403 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.004349 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.136357 B = 6436.548066 C = 6821.428913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.100 4.100 4 C -0.112 4.112 5 C -0.082 4.082 6 C -0.117 4.117 7 C -0.114 4.114 8 C 0.180 3.820 9 N -0.743 5.743 10 C 0.540 3.460 11 O -0.633 6.633 12 C -0.573 4.573 13 H 0.084 0.916 14 C 0.030 3.970 15 N -0.821 5.821 16 Si 0.998 3.002 17 H -0.255 1.255 18 H -0.273 1.273 19 H -0.254 1.254 20 C -0.082 4.082 21 C -0.116 4.116 22 C -0.100 4.100 23 C -0.114 4.114 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.390 0.610 36 H 0.275 0.725 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.123 -0.027 2.019 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.100 4.100 4 C -0.168 4.168 5 C -0.082 4.082 6 C -0.174 4.174 7 C -0.115 4.115 8 C 0.056 3.944 9 N -0.396 5.396 10 C 0.344 3.656 11 O -0.520 6.520 12 C -0.610 4.610 13 H 0.102 0.898 14 C -0.185 4.185 15 N -0.451 5.451 16 Si 0.817 3.183 17 H -0.179 1.179 18 H -0.197 1.197 19 H -0.178 1.178 20 C -0.082 4.082 21 C -0.172 4.172 22 C -0.100 4.100 23 C -0.170 4.170 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.222 0.778 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.380 -0.026 2.790 21.561 hybrid contribution 0.887 0.007 -0.688 1.123 sum -20.493 -0.019 2.101 20.600 Atomic orbital electron populations 1.20920 0.88835 1.03954 1.03155 1.19955 0.97511 0.91431 0.99591 1.19846 0.92090 0.96590 1.01459 1.20893 1.00093 0.92828 1.03034 1.19733 0.93972 0.94426 1.00089 1.20876 0.99502 0.94559 1.02421 1.19589 0.93561 0.93742 1.04562 1.19683 0.89914 0.99372 0.85462 1.45806 1.06800 1.80945 1.06080 1.18610 0.80390 0.76031 0.90566 1.90548 1.56155 1.57405 1.47911 1.21369 0.93262 1.54960 0.91402 0.89762 1.26964 0.96545 0.91148 1.03840 1.70183 1.03203 1.36359 1.35331 0.85075 0.77275 0.80277 0.75675 1.17859 1.19726 1.17844 1.19729 0.93979 0.94435 1.00073 1.20880 0.99438 0.94568 1.02302 1.19837 0.92088 0.96610 1.01459 1.20929 1.00230 0.92828 1.02995 0.90267 0.90000 0.90288 0.90287 0.91132 0.89836 0.90873 0.93704 0.89263 0.94506 0.94140 0.77759 0.91531 0.91623 0.93336 0.89030 0.90577 0.91029 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 8.79 71.23 0.63 -1.00 16 2 C -0.08 -1.93 5.88 -19.87 -0.12 -2.05 16 3 C -0.10 -2.49 5.88 -19.86 -0.12 -2.61 16 4 C -0.11 -1.98 8.79 71.24 0.63 -1.36 16 5 C -0.08 -2.53 5.88 -19.87 -0.12 -2.65 16 6 C -0.12 -3.49 8.78 71.24 0.63 -2.86 16 7 C -0.11 -4.01 5.25 -19.87 -0.10 -4.11 16 8 C 0.18 7.85 4.58 85.63 0.39 8.24 16 9 N -0.74 -36.05 5.49 -471.16 -2.59 -38.63 16 10 C 0.54 32.66 7.75 86.36 0.67 33.32 16 11 O -0.63 -43.95 15.02 -4.32 -0.06 -44.02 16 12 C -0.57 -33.59 9.54 24.83 0.24 -33.35 16 13 H 0.08 4.46 7.85 -2.91 -0.02 4.43 16 14 C 0.03 1.72 5.50 85.30 0.47 2.19 16 15 N -0.82 -51.38 11.83 21.84 0.26 -51.12 16 16 Si 1.00 41.80 29.56 68.60 2.03 43.83 16 17 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 19 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 20 C -0.08 -2.52 5.88 -19.87 -0.12 -2.64 16 21 C -0.12 -3.43 9.20 71.23 0.66 -2.78 16 22 C -0.10 -2.49 5.88 -19.86 -0.12 -2.61 16 23 C -0.11 -2.00 9.20 71.24 0.66 -1.35 16 24 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 25 H 0.08 0.96 5.95 -2.39 -0.01 0.95 16 26 H 0.08 0.95 6.70 -2.39 -0.02 0.93 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.24 5.94 -2.39 -0.01 1.22 16 29 H 0.08 1.16 6.70 -2.39 -0.02 1.14 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.63 6.67 -2.39 -0.02 1.61 16 32 H 0.09 2.16 5.94 -2.39 -0.01 2.14 16 33 H 0.04 1.72 6.72 -2.38 -0.02 1.70 16 34 H 0.04 1.89 5.95 -2.39 -0.01 1.87 16 35 H 0.39 17.20 8.44 -92.70 -0.78 16.42 16 36 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.66 5.95 -2.39 -0.01 1.65 16 39 H 0.09 2.12 5.95 -2.39 -0.01 2.11 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.21 5.95 -2.38 -0.01 1.20 16 42 H 0.09 1.15 5.95 -2.39 -0.01 1.14 16 Total: -1.00 -77.91 329.64 4.17 -73.74 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.27 Total: 31.81 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.27 Total: -15.61 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.33 Total: -89.76 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.06 Total: -44.02 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -77.91 4.17 -73.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335445236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.573 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds