Wall clock time and date at job start Mon Mar 30 2020 01:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48495 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47356 * 299.99786 * 3 2 1 6 6 H 1.48507 * 109.47043 * 59.99738 * 3 2 1 7 7 C 1.39945 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00432 * 192.84802 * 7 2 1 9 9 C 1.41401 * 119.99384 * 12.84770 * 7 2 1 10 10 C 1.40710 * 120.24934 * 28.05197 * 9 7 2 11 11 C 1.37615 * 119.74505 * 180.26480 * 10 9 7 12 12 C 1.38628 * 120.25017 * 359.50437 * 11 10 9 13 13 C 1.50705 * 119.75027 * 180.25278 * 12 11 10 14 14 N 1.46901 * 109.47251 * 94.63615 * 13 12 11 15 15 C 1.44262 * 111.00073 * 303.07975 * 14 13 12 16 16 C 1.54073 * 111.98224 * 219.31015 * 15 14 13 17 17 C 1.54290 * 112.28520 * 318.91133 * 16 15 14 18 18 C 1.50458 * 113.03728 * 318.30598 * 17 16 15 19 19 H 1.09008 * 109.57118 * 332.33813 * 18 17 16 20 20 O 1.42902 * 109.57707 * 211.96895 * 18 17 16 21 21 C 1.54507 * 108.85686 * 92.15086 * 18 17 16 22 22 C 1.45862 * 111.59044 * 282.81201 * 21 18 17 23 23 C 1.38635 * 120.50006 * 0.26996 * 12 11 10 24 24 C 1.37617 * 120.24848 * 359.97438 * 23 12 11 25 25 H 0.96996 * 119.99420 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.12582 * 0.02562 * 10 9 7 27 27 H 1.08012 * 119.87107 * 179.77180 * 11 10 9 28 28 H 1.09001 * 109.47214 * 214.64082 * 13 12 11 29 29 H 1.09002 * 109.46959 * 334.63591 * 13 12 11 30 30 H 1.09001 * 108.98224 * 339.95369 * 15 14 13 31 31 H 1.08998 * 108.98430 * 98.66143 * 15 14 13 32 32 H 1.09005 * 108.91854 * 198.19171 * 16 15 14 33 33 H 1.08996 * 108.84401 * 79.58499 * 16 15 14 34 34 H 1.08996 * 108.77142 * 197.38525 * 17 16 15 35 35 H 1.08996 * 108.67745 * 79.15898 * 17 16 15 36 36 H 0.96700 * 114.00371 * 60.62312 * 20 18 17 37 37 H 1.08994 * 109.05618 * 162.26679 * 21 18 17 38 38 H 1.08999 * 109.05546 * 43.35422 * 21 18 17 39 39 H 1.09009 * 108.79095 * 300.43539 * 22 21 18 40 40 H 1.09002 * 108.78999 * 182.21451 * 22 21 18 41 41 H 1.08008 * 119.87199 * 180.02562 * 23 12 11 42 42 H 1.08003 * 120.12559 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0677 -1.2236 0.2085 9 6 1.3275 -2.4212 -0.2712 10 6 0.1790 -2.4210 -1.0843 11 6 -0.4784 -3.6032 -1.3376 12 6 -0.0074 -4.7926 -0.8035 13 6 -0.7329 -6.0814 -1.0928 14 7 -0.1082 -6.7473 -2.2436 15 6 -0.1003 -5.8836 -3.3990 16 6 -0.4027 -6.6551 -4.6980 17 6 0.3074 -8.0241 -4.7441 18 6 1.7223 -7.9710 -4.2352 19 1 2.1295 -6.9720 -4.3920 20 8 2.5187 -8.9301 -4.9336 21 6 1.7225 -8.2989 -2.7253 22 6 1.2751 -7.1617 -1.9290 23 6 1.1258 -4.8053 -0.0049 24 6 1.7964 -3.6345 0.2657 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1873 -1.4961 -1.5048 27 1 -1.3623 -3.6048 -1.9584 28 1 -0.6768 -6.7335 -0.2212 29 1 -1.7773 -5.8674 -1.3198 30 1 -0.8522 -5.1058 -3.2655 31 1 0.8802 -5.4153 -3.4850 32 1 -0.0741 -6.0577 -5.5485 33 1 -1.4787 -6.8124 -4.7716 34 1 0.3184 -8.3789 -5.7747 35 1 -0.2576 -8.7310 -4.1366 36 1 2.5627 -8.7843 -5.8885 37 1 2.7328 -8.5714 -2.4205 38 1 1.0576 -9.1435 -2.5445 39 1 1.9439 -6.3204 -2.1115 40 1 1.3304 -7.4286 -0.8736 41 1 1.4841 -5.7379 0.4056 42 1 2.6792 -3.6468 0.8878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336371000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:42 Heat of formation + Delta-G solvation = -38.188356 kcal Electronic energy + Delta-G solvation = -21648.090641 eV Core-core repulsion = 18591.960901 eV Total energy + Delta-G solvation = -3056.129740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.59717 -37.75024 -36.30611 -33.91258 -32.72854 -32.20392 -29.91540 -29.34971 -27.25174 -25.23581 -24.47999 -23.25722 -21.08237 -20.59705 -19.93843 -19.20973 -17.39810 -17.14911 -15.76102 -15.54668 -15.28108 -14.79078 -14.29713 -14.08098 -13.83130 -13.72143 -13.26968 -13.17249 -12.71924 -12.56687 -12.03270 -11.95131 -11.71676 -11.37375 -11.25795 -11.15315 -11.02676 -10.78745 -10.65995 -10.56400 -10.47973 -10.32580 -10.20964 -9.77834 -9.70819 -9.41516 -9.22755 -7.94174 -7.51623 -7.30309 -6.76840 -4.41760 2.68730 2.99349 3.04644 3.09684 3.12265 3.90272 4.20348 4.31351 4.61911 4.84617 5.05648 5.19013 5.35179 5.41630 5.50673 5.56190 5.66226 5.68767 5.86302 5.93685 5.99854 6.12250 6.20029 6.22601 6.24428 6.27693 6.31615 6.34687 6.40520 6.45610 6.54911 6.87857 7.03804 7.19956 7.29777 7.46578 7.53778 7.57992 7.66461 7.78941 8.00675 8.05369 8.25030 8.59368 8.85181 8.91623 10.17347 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027742 B = 0.004100 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.063089 B = 6826.905308 C = 6904.579280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.160 4.160 11 C -0.092 4.092 12 C -0.247 4.247 13 C 0.114 3.886 14 N -0.523 5.523 15 C 0.054 3.946 16 C -0.108 4.108 17 C -0.137 4.137 18 C 0.106 3.894 19 H 0.053 0.947 20 O -0.573 6.573 21 C -0.102 4.102 22 C 0.055 3.945 23 C -0.082 4.082 24 C -0.224 4.224 25 H 0.279 0.721 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.373 0.627 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 -9.913 -7.457 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.180 4.180 11 C -0.111 4.111 12 C -0.249 4.249 13 C -0.012 4.012 14 N -0.246 5.246 15 C -0.075 4.075 16 C -0.147 4.147 17 C -0.175 4.175 18 C 0.048 3.952 19 H 0.071 0.929 20 O -0.378 6.378 21 C -0.140 4.140 22 C -0.072 4.072 23 C -0.101 4.101 24 C -0.244 4.244 25 H 0.090 0.910 26 H 0.135 0.865 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.220 0.780 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.583 -10.426 -6.941 12.539 hybrid contribution 0.656 1.910 -0.260 2.036 sum 0.072 -8.516 -7.201 11.152 Atomic orbital electron populations 1.69810 1.07470 1.28984 1.36222 1.25892 0.94793 1.01238 0.92327 0.86252 0.80876 0.80986 0.78556 1.18471 1.19749 1.19963 1.19631 0.96471 0.90765 1.42530 0.90541 1.17639 0.91299 0.92029 0.88063 1.21327 0.98942 0.96498 1.01206 1.20557 0.98180 0.92898 0.99468 1.19710 1.01279 0.94689 1.09261 1.20940 0.96666 0.91904 0.91728 1.62052 1.17586 1.40046 1.04874 1.21861 1.01453 0.94221 0.90012 1.21930 1.00210 0.95409 0.97108 1.21929 0.96589 0.98625 1.00378 1.21598 0.89896 0.91071 0.92668 0.92946 1.86493 1.72619 1.55139 1.23592 1.20516 1.01580 0.99419 0.92437 1.20905 0.89859 0.97182 0.99273 1.20391 0.95513 0.96185 0.98018 1.21020 1.03274 0.93410 1.06652 0.90992 0.86529 0.89678 0.91711 0.91503 0.91179 0.94021 0.92608 0.92068 0.92815 0.90945 0.78021 0.91248 0.91183 0.93747 0.91156 0.89692 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.56 10.91 55.55 0.61 -19.95 16 2 C 0.07 1.86 5.22 -17.34 -0.09 1.77 16 3 Si 0.91 18.61 29.58 -169.99 -5.03 13.58 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.24 9.06 -37.74 -0.34 -12.58 16 8 H 0.08 1.95 7.88 -52.49 -0.41 1.54 16 9 C 0.11 2.94 5.55 -106.82 -0.59 2.35 16 10 C -0.16 -4.06 8.66 -38.88 -0.34 -4.40 16 11 C -0.09 -2.05 8.43 -39.66 -0.33 -2.38 16 12 C -0.25 -5.04 4.35 -104.33 -0.45 -5.50 16 13 C 0.11 1.93 5.29 -4.97 -0.03 1.90 16 14 N -0.52 -8.04 4.45 -241.00 -1.07 -9.11 16 15 C 0.05 0.82 4.15 -4.67 -0.02 0.80 16 16 C -0.11 -1.34 6.15 -25.50 -0.16 -1.50 16 17 C -0.14 -1.61 5.16 -27.33 -0.14 -1.75 16 18 C 0.11 1.34 3.14 -27.21 -0.09 1.26 16 19 H 0.05 0.70 7.15 -51.92 -0.37 0.33 16 20 O -0.57 -6.91 13.27 -35.23 -0.47 -7.38 16 21 C -0.10 -1.36 5.20 -29.32 -0.15 -1.51 16 22 C 0.06 0.83 3.63 -6.71 -0.02 0.80 16 23 C -0.08 -1.76 8.37 -39.66 -0.33 -2.09 16 24 C -0.22 -5.40 9.80 -38.87 -0.38 -5.78 16 25 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 26 H 0.12 3.09 6.25 -52.48 -0.33 2.76 16 27 H 0.09 1.73 7.33 -52.48 -0.38 1.34 16 28 H 0.06 1.05 7.89 -51.93 -0.41 0.64 16 29 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 30 H 0.07 1.14 5.77 -51.93 -0.30 0.84 16 31 H 0.04 0.71 6.51 -51.93 -0.34 0.37 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.54 7.86 -51.93 -0.41 0.13 16 35 H 0.07 0.92 7.38 -51.93 -0.38 0.54 16 36 H 0.37 2.91 8.94 45.56 0.41 3.32 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.93 7.59 -51.93 -0.39 0.54 16 39 H 0.04 0.75 6.79 -51.92 -0.35 0.40 16 40 H 0.07 1.04 6.76 -51.93 -0.35 0.69 16 41 H 0.08 1.62 7.10 -52.48 -0.37 1.25 16 42 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -27.27 321.69 -10.22 -37.49 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.64 Total: 9.13 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -3.47 Total: -28.61 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: -0.47 Total: -29.06 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.47 Total: -7.38 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.27 -10.22 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336371000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.697 kcal (2) G-P(sol) polarization free energy of solvation -27.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds