Wall clock time and date at job start Mon Mar 30 2020 01:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86797 * 120.00271 * 2 1 4 4 H 1.48495 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47356 * 299.99786 * 3 2 1 6 6 H 1.48507 * 109.47043 * 59.99738 * 3 2 1 7 7 C 1.39945 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00432 * 192.84802 * 7 2 1 9 9 C 1.41401 * 119.99384 * 12.84770 * 7 2 1 10 10 C 1.40710 * 120.24934 * 28.05197 * 9 7 2 11 11 C 1.37615 * 119.74505 * 180.26480 * 10 9 7 12 12 C 1.38628 * 120.25017 * 359.50437 * 11 10 9 13 13 C 1.50705 * 119.75027 * 180.25278 * 12 11 10 14 14 N 1.46901 * 109.47251 * 94.63615 * 13 12 11 15 15 C 1.44262 * 111.00073 * 303.07975 * 14 13 12 16 16 C 1.54073 * 111.98224 * 219.31015 * 15 14 13 17 17 C 1.54290 * 112.28520 * 318.91133 * 16 15 14 18 18 C 1.50458 * 113.03728 * 318.30598 * 17 16 15 19 19 H 1.09008 * 109.57118 * 332.33813 * 18 17 16 20 20 O 1.42902 * 109.57707 * 211.96895 * 18 17 16 21 21 C 1.54507 * 108.85686 * 92.15086 * 18 17 16 22 22 C 1.45862 * 111.59044 * 282.81201 * 21 18 17 23 23 C 1.38635 * 120.50006 * 0.26996 * 12 11 10 24 24 C 1.37617 * 120.24848 * 359.97438 * 23 12 11 25 25 H 0.96996 * 119.99420 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.12582 * 0.02562 * 10 9 7 27 27 H 1.08012 * 119.87107 * 179.77180 * 11 10 9 28 28 H 1.09001 * 109.47214 * 214.64082 * 13 12 11 29 29 H 1.09002 * 109.46959 * 334.63591 * 13 12 11 30 30 H 1.09001 * 108.98224 * 339.95369 * 15 14 13 31 31 H 1.08998 * 108.98430 * 98.66143 * 15 14 13 32 32 H 1.09005 * 108.91854 * 198.19171 * 16 15 14 33 33 H 1.08996 * 108.84401 * 79.58499 * 16 15 14 34 34 H 1.08996 * 108.77142 * 197.38525 * 17 16 15 35 35 H 1.08996 * 108.67745 * 79.15898 * 17 16 15 36 36 H 0.96700 * 114.00371 * 60.62312 * 20 18 17 37 37 H 1.08994 * 109.05618 * 162.26679 * 21 18 17 38 38 H 1.08999 * 109.05546 * 43.35422 * 21 18 17 39 39 H 1.09009 * 108.79095 * 300.43539 * 22 21 18 40 40 H 1.09002 * 108.78999 * 182.21451 * 22 21 18 41 41 H 1.08008 * 119.87199 * 180.02562 * 23 12 11 42 42 H 1.08003 * 120.12559 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0677 -1.2236 0.2085 9 6 1.3275 -2.4212 -0.2712 10 6 0.1790 -2.4210 -1.0843 11 6 -0.4784 -3.6032 -1.3376 12 6 -0.0074 -4.7926 -0.8035 13 6 -0.7329 -6.0814 -1.0928 14 7 -0.1082 -6.7473 -2.2436 15 6 -0.1003 -5.8836 -3.3990 16 6 -0.4027 -6.6551 -4.6980 17 6 0.3074 -8.0241 -4.7441 18 6 1.7223 -7.9710 -4.2352 19 1 2.1295 -6.9720 -4.3920 20 8 2.5187 -8.9301 -4.9336 21 6 1.7225 -8.2989 -2.7253 22 6 1.2751 -7.1617 -1.9290 23 6 1.1258 -4.8053 -0.0049 24 6 1.7964 -3.6345 0.2657 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1873 -1.4961 -1.5048 27 1 -1.3623 -3.6048 -1.9584 28 1 -0.6768 -6.7335 -0.2212 29 1 -1.7773 -5.8674 -1.3198 30 1 -0.8522 -5.1058 -3.2655 31 1 0.8802 -5.4153 -3.4850 32 1 -0.0741 -6.0577 -5.5485 33 1 -1.4787 -6.8124 -4.7716 34 1 0.3184 -8.3789 -5.7747 35 1 -0.2576 -8.7310 -4.1366 36 1 2.5627 -8.7843 -5.8885 37 1 2.7328 -8.5714 -2.4205 38 1 1.0576 -9.1435 -2.5445 39 1 1.9439 -6.3204 -2.1115 40 1 1.3304 -7.4286 -0.8736 41 1 1.4841 -5.7379 0.4056 42 1 2.6792 -3.6468 0.8878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336371000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:41 Heat of formation + Delta-G solvation = -55.125703 kcal Electronic energy + Delta-G solvation = -21648.825099 eV Core-core repulsion = 18591.960901 eV Total energy + Delta-G solvation = -3056.864198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87553 -39.26771 -37.58496 -35.60020 -34.00294 -33.37671 -31.58244 -31.16451 -28.73859 -26.74522 -25.61229 -24.71045 -22.84587 -22.15001 -21.20776 -20.47091 -19.24393 -18.17622 -17.20385 -16.94591 -16.66734 -16.15377 -15.83966 -15.51261 -15.29592 -15.12347 -14.46516 -14.39137 -14.26677 -13.92219 -13.67749 -13.45459 -13.30944 -12.84239 -12.74332 -12.58929 -12.48528 -12.28737 -12.08500 -11.88312 -11.71220 -11.56663 -11.47389 -11.32347 -11.17697 -11.06127 -10.72364 -9.40805 -9.33914 -9.07984 -8.61968 -6.37841 0.91801 1.11568 1.35497 1.46534 1.50061 2.18917 2.69228 3.11191 3.29913 3.71451 3.85033 4.02150 4.07654 4.18844 4.32539 4.36966 4.37703 4.45409 4.51843 4.54111 4.60755 4.78505 4.85805 4.95702 4.99562 5.03511 5.10448 5.15242 5.21198 5.24033 5.27048 5.34852 5.37624 5.44118 5.46837 5.68657 5.93333 6.08532 6.11170 6.19944 6.34307 6.38206 6.69022 6.92235 6.92904 7.01299 8.34125 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027742 B = 0.004100 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.063089 B = 6826.905308 C = 6904.579280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.079 3.921 10 C -0.184 4.184 11 C -0.093 4.093 12 C -0.228 4.228 13 C 0.117 3.883 14 N -0.512 5.512 15 C 0.054 3.946 16 C -0.102 4.102 17 C -0.131 4.131 18 C 0.109 3.891 19 H 0.040 0.960 20 O -0.583 6.583 21 C -0.101 4.101 22 C 0.061 3.939 23 C -0.081 4.081 24 C -0.241 4.241 25 H 0.286 0.714 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.392 0.608 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -11.445 -8.328 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.535 4.535 8 H 0.089 0.911 9 C 0.077 3.923 10 C -0.203 4.203 11 C -0.112 4.112 12 C -0.230 4.230 13 C -0.010 4.010 14 N -0.234 5.234 15 C -0.075 4.075 16 C -0.141 4.141 17 C -0.169 4.169 18 C 0.050 3.950 19 H 0.058 0.942 20 O -0.392 6.392 21 C -0.138 4.138 22 C -0.067 4.067 23 C -0.100 4.100 24 C -0.261 4.261 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.242 0.758 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.038 0.962 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.987 -11.981 -7.833 14.348 hybrid contribution 0.756 2.216 -0.033 2.342 sum -0.231 -9.764 -7.865 12.540 Atomic orbital electron populations 1.69867 1.08818 1.30225 1.36999 1.26706 0.95575 1.04336 0.91349 0.85166 0.79261 0.76348 0.78971 1.18382 1.18837 1.19035 1.19848 0.96497 0.92154 1.44965 0.91133 1.17965 0.92253 0.93002 0.89109 1.21274 0.99768 0.96963 1.02337 1.20795 0.98444 0.92570 0.99365 1.20156 1.00368 0.95790 1.06718 1.21016 0.96822 0.90158 0.93034 1.62153 1.17806 1.39179 1.04225 1.21891 0.99771 0.94449 0.91409 1.21881 1.00956 0.95658 0.95571 1.21862 0.95539 0.97859 1.01621 1.21476 0.90569 0.90572 0.92350 0.94165 1.86451 1.72500 1.54847 1.25361 1.20463 1.01694 0.98702 0.92990 1.20890 0.88964 0.96862 0.99950 1.20697 0.95315 0.96372 0.97610 1.21214 1.03857 0.93922 1.07108 0.90323 0.88521 0.87790 0.90095 0.90434 0.92341 0.96295 0.91529 0.91108 0.90597 0.91508 0.75825 0.91115 0.90572 0.96175 0.90756 0.86886 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.24 10.91 21.83 0.24 -44.00 16 2 C 0.03 1.74 5.22 85.26 0.44 2.19 16 3 Si 0.98 38.96 29.58 68.60 2.03 40.99 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.50 -27.82 9.06 23.46 0.21 -27.61 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 9 C 0.08 4.31 5.55 -21.29 -0.12 4.19 16 10 C -0.18 -9.66 8.66 22.73 0.20 -9.46 16 11 C -0.09 -4.14 8.43 22.22 0.19 -3.95 16 12 C -0.23 -9.07 4.35 -19.67 -0.09 -9.16 16 13 C 0.12 3.66 5.29 85.56 0.45 4.11 16 14 N -0.51 -14.63 4.45 -916.38 -4.08 -18.71 16 15 C 0.05 1.57 4.15 87.16 0.36 1.93 16 16 C -0.10 -2.28 6.15 31.39 0.19 -2.09 16 17 C -0.13 -2.69 5.16 30.21 0.16 -2.54 16 18 C 0.11 2.53 3.14 30.28 0.10 2.62 16 19 H 0.04 1.03 7.15 -2.38 -0.02 1.02 16 20 O -0.58 -12.60 13.27 -148.98 -1.98 -14.58 16 21 C -0.10 -2.49 5.20 28.92 0.15 -2.34 16 22 C 0.06 1.72 3.63 83.94 0.30 2.02 16 23 C -0.08 -3.43 8.37 22.22 0.19 -3.24 16 24 C -0.24 -11.91 9.80 22.73 0.22 -11.68 16 25 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 26 H 0.10 5.38 6.25 -2.91 -0.02 5.37 16 27 H 0.10 4.17 7.33 -2.90 -0.02 4.14 16 28 H 0.08 2.33 7.89 -2.39 -0.02 2.31 16 29 H 0.08 2.31 8.03 -2.39 -0.02 2.30 16 30 H 0.06 1.83 5.77 -2.39 -0.01 1.81 16 31 H 0.02 0.63 6.51 -2.39 -0.02 0.62 16 32 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.25 7.86 -2.39 -0.02 1.23 16 35 H 0.07 1.48 7.38 -2.39 -0.02 1.47 16 36 H 0.39 5.01 8.94 -74.06 -0.66 4.35 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.82 7.59 -2.39 -0.02 1.80 16 39 H 0.02 0.67 6.79 -2.38 -0.02 0.65 16 40 H 0.07 2.03 6.76 -2.39 -0.02 2.01 16 41 H 0.11 4.09 7.10 -2.91 -0.02 4.07 16 42 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -60.22 321.69 -0.48 -60.70 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.35 Total: 30.61 kcal Atomic # 6 Polarization: -57.97 SS G_CDS: 2.96 Total: -55.01 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -3.84 Total: -62.70 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.98 Total: -14.58 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -60.22 -0.48 -60.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336371000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.570 kcal (2) G-P(sol) polarization free energy of solvation -60.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds