Wall clock time and date at job start Mon Mar 30 2020 01:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99649 * 2 1 4 4 H 1.48506 * 109.46974 * 89.99683 * 3 2 1 5 5 H 1.48494 * 109.47343 * 209.99712 * 3 2 1 6 6 H 1.48502 * 109.47216 * 330.00058 * 3 2 1 7 7 C 1.39941 * 120.00491 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99998 * 162.29554 * 7 2 1 9 9 C 1.41400 * 119.99791 * 342.30067 * 7 2 1 10 10 C 1.40712 * 120.24409 * 335.44211 * 9 7 2 11 11 C 1.37613 * 119.74352 * 179.71796 * 10 9 7 12 12 C 1.38638 * 120.24776 * 0.53807 * 11 10 9 13 13 C 1.50704 * 119.74911 * 179.73473 * 12 11 10 14 14 N 1.46904 * 109.47221 * 270.02657 * 13 12 11 15 15 C 1.44294 * 111.00234 * 66.04452 * 14 13 12 16 16 C 1.53985 * 108.31735 * 221.35287 * 15 14 13 17 17 C 1.45885 * 112.66156 * 278.60286 * 16 15 14 18 18 C 1.54514 * 111.67081 * 61.49644 * 17 16 15 19 19 H 1.08997 * 109.57537 * 42.70098 * 18 17 16 20 20 O 1.42905 * 109.56992 * 162.94464 * 18 17 16 21 21 C 1.50538 * 108.86611 * 282.75678 * 18 17 16 22 22 C 1.47943 * 110.99759 * 193.46685 * 14 13 12 23 23 C 1.38635 * 120.50132 * 359.76020 * 12 11 10 24 24 C 1.37612 * 120.24897 * 359.95524 * 23 12 11 25 25 H 0.96998 * 120.00304 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.12551 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.87665 * 180.27509 * 11 10 9 28 28 H 1.09001 * 109.46761 * 30.02384 * 13 12 11 29 29 H 1.08995 * 109.47101 * 150.02306 * 13 12 11 30 30 H 1.09003 * 109.69922 * 341.05733 * 15 14 13 31 31 H 1.08998 * 109.69496 * 101.60431 * 15 14 13 32 32 H 1.08998 * 108.84663 * 39.41677 * 16 15 14 33 33 H 1.09004 * 108.84566 * 157.88805 * 16 15 14 34 34 H 1.08996 * 109.03872 * 182.06416 * 17 16 15 35 35 H 1.08997 * 109.03762 * 300.93212 * 17 16 15 36 36 H 0.96698 * 113.99739 * 300.00610 * 20 18 17 37 37 H 1.09002 * 108.79119 * 212.64550 * 21 18 17 38 38 H 1.09000 * 108.78955 * 330.97784 * 21 18 17 39 39 H 1.08999 * 108.71051 * 313.17279 * 22 14 13 40 40 H 1.08997 * 108.71371 * 71.18367 * 22 14 13 41 41 H 1.07999 * 119.87541 * 179.97438 * 23 12 11 42 42 H 1.08001 * 120.13103 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 1.4001 5 1 3.5397 1.4404 -0.6999 6 1 1.4396 2.6527 -0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0497 -1.2340 -0.2839 9 6 1.3513 -2.4073 0.3734 10 6 0.2203 -2.3635 1.2093 11 6 -0.4144 -3.5328 1.5610 12 6 0.0632 -4.7515 1.1040 13 6 -0.6370 -6.0255 1.5010 14 7 -0.0510 -6.5388 2.7465 15 6 -0.3138 -5.6450 3.8484 16 6 0.9630 -5.5419 4.7030 17 6 1.1126 -6.6608 5.6272 18 6 1.2247 -8.0079 4.8788 19 1 1.8820 -7.8933 4.0169 20 8 1.7569 -9.0010 5.7579 21 6 -0.1466 -8.4247 4.4185 22 6 -0.4778 -7.9328 2.9981 23 6 1.1804 -4.8069 0.2850 24 6 1.8275 -3.6499 -0.0842 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1512 -1.4155 1.5695 27 1 -1.2853 -3.5014 2.1989 28 1 -1.6974 -5.8247 1.6541 29 1 -0.5180 -6.7669 0.7109 30 1 -0.5807 -4.6595 3.4666 31 1 -1.1308 -6.0380 4.4534 32 1 1.8285 -5.5141 4.0410 33 1 0.9290 -4.6156 5.2765 34 1 2.0113 -6.5103 6.2252 35 1 0.2476 -6.6929 6.2896 36 1 2.6366 -8.7919 6.1008 37 1 -0.2073 -9.5129 4.4363 38 1 -0.8866 -8.0210 5.1096 39 1 -1.5550 -8.0014 2.8467 40 1 0.0161 -8.5851 2.2781 41 1 1.5441 -5.7618 -0.0649 42 1 2.6974 -3.6953 -0.7226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336371001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:45 Heat of formation + Delta-G solvation = -37.999463 kcal Electronic energy + Delta-G solvation = -21463.264323 eV Core-core repulsion = 18407.142774 eV Total energy + Delta-G solvation = -3056.121549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.41302 -37.69680 -36.31382 -33.99031 -33.16428 -31.85238 -29.94960 -29.30217 -27.13531 -25.37244 -24.59232 -22.89312 -21.06695 -20.41595 -19.91597 -19.42364 -17.40395 -17.28596 -16.05516 -15.30766 -14.99716 -14.81917 -14.53257 -14.03579 -13.88171 -13.56447 -13.41435 -13.00268 -12.73004 -12.48053 -12.13433 -11.92829 -11.81257 -11.53496 -11.30161 -11.10575 -10.95349 -10.90074 -10.70456 -10.48919 -10.41320 -10.36147 -10.28380 -9.72494 -9.54470 -9.34315 -9.12704 -7.79806 -7.42437 -7.27961 -6.75986 -4.34167 2.73851 3.06289 3.09453 3.10338 3.17891 3.93026 4.14072 4.31197 4.70359 4.71998 4.92081 5.18824 5.26263 5.33194 5.54755 5.58322 5.70231 5.72448 5.78006 5.91039 5.93129 6.02130 6.04567 6.19625 6.24269 6.26015 6.28059 6.38218 6.42737 6.45816 6.65987 6.95337 7.08422 7.28414 7.39063 7.51454 7.61412 7.64117 7.66632 7.90621 8.06623 8.15398 8.31671 8.64993 8.90824 8.99025 10.18639 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.003994 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.865518 B = 7009.233004 C = 7322.878277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.262 1.262 6 H -0.278 1.278 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.165 4.165 11 C -0.095 4.095 12 C -0.205 4.205 13 C 0.123 3.877 14 N -0.543 5.543 15 C 0.058 3.942 16 C -0.114 4.114 17 C -0.139 4.139 18 C 0.111 3.889 19 H 0.069 0.931 20 O -0.576 6.576 21 C -0.112 4.112 22 C 0.064 3.936 23 C -0.069 4.069 24 C -0.228 4.228 25 H 0.280 0.720 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.023 0.977 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.375 0.625 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 -9.850 7.994 12.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.186 1.186 6 H -0.204 1.204 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.184 4.184 11 C -0.114 4.114 12 C -0.207 4.207 13 C -0.003 4.003 14 N -0.268 5.268 15 C -0.071 4.071 16 C -0.152 4.152 17 C -0.177 4.177 18 C 0.052 3.948 19 H 0.087 0.913 20 O -0.382 6.382 21 C -0.150 4.150 22 C -0.063 4.063 23 C -0.088 4.088 24 C -0.248 4.248 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.222 0.778 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.651 -9.998 7.788 12.691 hybrid contribution -0.030 1.155 0.212 1.175 sum -0.681 -8.843 8.000 11.944 Atomic orbital electron populations 1.69827 1.07564 1.29118 1.35464 1.25894 0.94694 1.01245 0.92245 0.86341 0.80535 0.80706 0.79302 1.19302 1.18632 1.20362 1.19610 0.98081 0.91328 1.40331 0.90518 1.17609 0.91065 0.91986 0.88334 1.21265 0.99353 0.96604 1.01214 1.20496 0.98410 0.92934 0.99521 1.18835 1.01413 0.92206 1.08202 1.20718 0.94349 0.95170 0.90039 1.60886 1.61693 1.00557 1.03664 1.21883 0.95456 0.97982 0.91743 1.20378 1.00050 0.97020 0.97740 1.21249 1.01761 0.95942 0.98728 1.21547 0.95395 0.86287 0.91551 0.91299 1.86475 1.37243 1.47672 1.66841 1.21302 0.95820 1.01548 0.96331 1.22308 0.97771 0.90551 0.95682 1.20303 0.94888 0.96198 0.97405 1.20966 1.03704 0.92967 1.07115 0.90948 0.86624 0.89888 0.95863 0.91891 0.89564 0.95170 0.90666 0.92311 0.92347 0.92422 0.77799 0.90671 0.92056 0.95053 0.91231 0.89573 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.41 10.95 55.55 0.61 -19.80 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 6 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.46 -12.27 9.05 -37.74 -0.34 -12.61 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 9 C 0.11 2.97 5.57 -106.82 -0.60 2.38 16 10 C -0.16 -4.20 8.70 -38.88 -0.34 -4.54 16 11 C -0.09 -2.13 8.10 -39.66 -0.32 -2.45 16 12 C -0.20 -4.31 5.05 -104.33 -0.53 -4.84 16 13 C 0.12 2.13 5.02 -4.97 -0.02 2.11 16 14 N -0.54 -8.46 4.00 -236.08 -0.94 -9.41 16 15 C 0.06 0.88 5.11 -4.70 -0.02 0.86 16 16 C -0.11 -1.61 5.38 -29.59 -0.16 -1.77 16 17 C -0.14 -1.68 5.00 -29.30 -0.15 -1.82 16 18 C 0.11 1.36 3.17 -27.17 -0.09 1.28 16 19 H 0.07 0.94 7.80 -51.93 -0.40 0.53 16 20 O -0.58 -6.74 13.23 -35.23 -0.47 -7.20 16 21 C -0.11 -1.36 5.02 -27.48 -0.14 -1.50 16 22 C 0.06 0.84 5.38 -2.77 -0.01 0.82 16 23 C -0.07 -1.53 9.67 -39.66 -0.38 -1.91 16 24 C -0.23 -5.56 9.80 -38.87 -0.38 -5.95 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 26 H 0.12 3.06 6.16 -52.48 -0.32 2.74 16 27 H 0.08 1.71 7.10 -52.49 -0.37 1.33 16 28 H 0.02 0.39 8.05 -51.93 -0.42 -0.02 16 29 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 30 H 0.09 1.49 4.48 -51.93 -0.23 1.26 16 31 H 0.03 0.43 6.79 -51.93 -0.35 0.08 16 32 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.06 0.69 7.59 -51.93 -0.39 0.30 16 36 H 0.38 2.90 9.06 45.56 0.41 3.31 16 37 H 0.07 0.88 7.99 -51.93 -0.42 0.46 16 38 H 0.06 0.74 6.65 -51.93 -0.35 0.40 16 39 H 0.03 0.39 8.02 -51.93 -0.42 -0.03 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -27.42 326.69 -10.24 -37.66 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.76 Total: 8.40 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -3.57 Total: -28.13 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: -0.33 Total: -29.21 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.47 Total: -7.20 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.42 -10.24 -37.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336371001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.338 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds