Wall clock time and date at job start Mon Mar 30 2020 01:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99649 * 2 1 4 4 H 1.48506 * 109.46974 * 89.99683 * 3 2 1 5 5 H 1.48494 * 109.47343 * 209.99712 * 3 2 1 6 6 H 1.48502 * 109.47216 * 330.00058 * 3 2 1 7 7 C 1.39941 * 120.00491 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99998 * 162.29554 * 7 2 1 9 9 C 1.41400 * 119.99791 * 342.30067 * 7 2 1 10 10 C 1.40712 * 120.24409 * 335.44211 * 9 7 2 11 11 C 1.37613 * 119.74352 * 179.71796 * 10 9 7 12 12 C 1.38638 * 120.24776 * 0.53807 * 11 10 9 13 13 C 1.50704 * 119.74911 * 179.73473 * 12 11 10 14 14 N 1.46904 * 109.47221 * 270.02657 * 13 12 11 15 15 C 1.44294 * 111.00234 * 66.04452 * 14 13 12 16 16 C 1.53985 * 108.31735 * 221.35287 * 15 14 13 17 17 C 1.45885 * 112.66156 * 278.60286 * 16 15 14 18 18 C 1.54514 * 111.67081 * 61.49644 * 17 16 15 19 19 H 1.08997 * 109.57537 * 42.70098 * 18 17 16 20 20 O 1.42905 * 109.56992 * 162.94464 * 18 17 16 21 21 C 1.50538 * 108.86611 * 282.75678 * 18 17 16 22 22 C 1.47943 * 110.99759 * 193.46685 * 14 13 12 23 23 C 1.38635 * 120.50132 * 359.76020 * 12 11 10 24 24 C 1.37612 * 120.24897 * 359.95524 * 23 12 11 25 25 H 0.96998 * 120.00304 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.12551 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.87665 * 180.27509 * 11 10 9 28 28 H 1.09001 * 109.46761 * 30.02384 * 13 12 11 29 29 H 1.08995 * 109.47101 * 150.02306 * 13 12 11 30 30 H 1.09003 * 109.69922 * 341.05733 * 15 14 13 31 31 H 1.08998 * 109.69496 * 101.60431 * 15 14 13 32 32 H 1.08998 * 108.84663 * 39.41677 * 16 15 14 33 33 H 1.09004 * 108.84566 * 157.88805 * 16 15 14 34 34 H 1.08996 * 109.03872 * 182.06416 * 17 16 15 35 35 H 1.08997 * 109.03762 * 300.93212 * 17 16 15 36 36 H 0.96698 * 113.99739 * 300.00610 * 20 18 17 37 37 H 1.09002 * 108.79119 * 212.64550 * 21 18 17 38 38 H 1.09000 * 108.78955 * 330.97784 * 21 18 17 39 39 H 1.08999 * 108.71051 * 313.17279 * 22 14 13 40 40 H 1.08997 * 108.71371 * 71.18367 * 22 14 13 41 41 H 1.07999 * 119.87541 * 179.97438 * 23 12 11 42 42 H 1.08001 * 120.13103 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 1.4001 5 1 3.5397 1.4404 -0.6999 6 1 1.4396 2.6527 -0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0497 -1.2340 -0.2839 9 6 1.3513 -2.4073 0.3734 10 6 0.2203 -2.3635 1.2093 11 6 -0.4144 -3.5328 1.5610 12 6 0.0632 -4.7515 1.1040 13 6 -0.6370 -6.0255 1.5010 14 7 -0.0510 -6.5388 2.7465 15 6 -0.3138 -5.6450 3.8484 16 6 0.9630 -5.5419 4.7030 17 6 1.1126 -6.6608 5.6272 18 6 1.2247 -8.0079 4.8788 19 1 1.8820 -7.8933 4.0169 20 8 1.7569 -9.0010 5.7579 21 6 -0.1466 -8.4247 4.4185 22 6 -0.4778 -7.9328 2.9981 23 6 1.1804 -4.8069 0.2850 24 6 1.8275 -3.6499 -0.0842 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1512 -1.4155 1.5695 27 1 -1.2853 -3.5014 2.1989 28 1 -1.6974 -5.8247 1.6541 29 1 -0.5180 -6.7669 0.7109 30 1 -0.5807 -4.6595 3.4666 31 1 -1.1308 -6.0380 4.4534 32 1 1.8285 -5.5141 4.0410 33 1 0.9290 -4.6156 5.2765 34 1 2.0113 -6.5103 6.2252 35 1 0.2476 -6.6929 6.2896 36 1 2.6366 -8.7919 6.1008 37 1 -0.2073 -9.5129 4.4363 38 1 -0.8866 -8.0210 5.1096 39 1 -1.5550 -8.0014 2.8467 40 1 0.0161 -8.5851 2.2781 41 1 1.5441 -5.7618 -0.0649 42 1 2.6974 -3.6953 -0.7226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336371001.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:45 Heat of formation + Delta-G solvation = -54.343925 kcal Electronic energy + Delta-G solvation = -21463.973072 eV Core-core repulsion = 18407.142774 eV Total energy + Delta-G solvation = -3056.830298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59642 -39.29957 -37.51946 -35.64984 -34.44088 -33.04713 -31.55491 -31.14968 -28.66517 -26.77026 -25.74390 -24.39362 -22.86304 -21.65408 -21.45565 -20.59285 -19.19222 -18.35658 -17.29258 -17.02367 -16.27108 -16.19075 -15.68711 -15.58653 -15.30751 -15.09127 -14.62079 -14.27120 -14.14326 -13.83611 -13.75502 -13.41538 -13.20923 -13.01976 -12.82487 -12.59516 -12.38333 -12.23732 -12.13213 -11.95485 -11.71652 -11.63922 -11.37242 -11.31959 -11.11947 -10.98124 -10.67494 -9.30371 -9.18219 -8.97258 -8.61821 -6.30603 0.97202 1.19684 1.37950 1.50732 1.51930 2.21445 2.68580 3.12780 3.36055 3.75441 3.83014 3.92534 4.11752 4.18411 4.25544 4.34921 4.39846 4.53605 4.55908 4.63985 4.66643 4.81033 4.81843 4.83829 4.88527 5.06918 5.07904 5.16726 5.18777 5.21859 5.30201 5.30898 5.40958 5.49952 5.52171 5.74496 6.00128 6.13862 6.24653 6.31187 6.43772 6.49662 6.74042 6.91829 6.97820 7.08031 8.35177 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.003994 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.865518 B = 7009.233004 C = 7322.878277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.268 1.268 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.080 3.920 10 C -0.188 4.188 11 C -0.094 4.094 12 C -0.189 4.189 13 C 0.128 3.872 14 N -0.551 5.551 15 C 0.058 3.942 16 C -0.107 4.107 17 C -0.134 4.134 18 C 0.115 3.885 19 H 0.055 0.945 20 O -0.585 6.585 21 C -0.110 4.110 22 C 0.066 3.934 23 C -0.072 4.072 24 C -0.244 4.244 25 H 0.287 0.713 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.031 0.969 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.392 0.608 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 -11.272 8.970 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.192 1.192 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.078 3.922 10 C -0.208 4.208 11 C -0.112 4.112 12 C -0.191 4.191 13 C 0.002 3.998 14 N -0.276 5.276 15 C -0.071 4.071 16 C -0.145 4.145 17 C -0.172 4.172 18 C 0.057 3.943 19 H 0.073 0.927 20 O -0.393 6.393 21 C -0.147 4.147 22 C -0.061 4.061 23 C -0.091 4.091 24 C -0.264 4.264 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.094 0.906 41 H 0.130 0.870 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.891 -11.443 8.775 14.448 hybrid contribution 0.011 1.419 -0.041 1.420 sum -0.880 -10.024 8.733 13.324 Atomic orbital electron populations 1.69878 1.08925 1.30368 1.36156 1.26700 0.95457 1.04334 0.91256 0.85248 0.79104 0.76141 0.79477 1.18733 1.18334 1.19221 1.19831 0.98200 0.92734 1.42651 0.91043 1.17933 0.92009 0.92945 0.89327 1.21219 1.00196 0.96977 1.02386 1.20713 0.98627 0.92653 0.99254 1.19259 1.00349 0.93482 1.05989 1.20635 0.94198 0.93556 0.91445 1.60782 1.61965 1.01840 1.02999 1.21859 0.96406 0.96830 0.91968 1.20308 0.98521 0.98144 0.97560 1.21179 1.02749 0.94966 0.98292 1.21413 0.95273 0.86436 0.91220 0.92740 1.86442 1.38660 1.47525 1.66663 1.21278 0.95749 1.01987 0.95708 1.22351 0.98505 0.88674 0.96566 1.20608 0.94871 0.96484 0.97132 1.21157 1.04272 0.93361 1.07607 0.90270 0.88498 0.88092 0.95121 0.90356 0.91875 0.93664 0.93015 0.92342 0.90940 0.91802 0.75861 0.89887 0.91755 0.93951 0.90586 0.86990 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.84 10.95 21.83 0.24 -43.60 16 2 C 0.04 1.90 5.14 85.26 0.44 2.34 16 3 Si 0.98 38.82 29.59 68.60 2.03 40.85 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.50 -27.82 9.05 23.46 0.21 -27.60 16 8 H 0.07 3.83 7.91 -2.91 -0.02 3.81 16 9 C 0.08 4.39 5.57 -21.29 -0.12 4.27 16 10 C -0.19 -9.94 8.70 22.73 0.20 -9.74 16 11 C -0.09 -4.24 8.10 22.22 0.18 -4.06 16 12 C -0.19 -7.77 5.05 -19.67 -0.10 -7.87 16 13 C 0.13 4.12 5.02 85.56 0.43 4.55 16 14 N -0.55 -15.90 4.00 -900.81 -3.60 -19.50 16 15 C 0.06 1.67 5.11 87.12 0.44 2.11 16 16 C -0.11 -2.91 5.38 28.75 0.15 -2.75 16 17 C -0.13 -2.93 5.00 28.93 0.14 -2.79 16 18 C 0.12 2.55 3.17 30.31 0.10 2.65 16 19 H 0.05 1.37 7.80 -2.39 -0.02 1.36 16 20 O -0.58 -12.05 13.23 -148.98 -1.97 -14.02 16 21 C -0.11 -2.33 5.02 30.11 0.15 -2.18 16 22 C 0.07 1.51 5.38 86.41 0.46 1.98 16 23 C -0.07 -3.15 9.67 22.22 0.21 -2.94 16 24 C -0.24 -12.19 9.80 22.73 0.22 -11.97 16 25 H 0.29 13.73 8.30 -92.71 -0.77 12.97 16 26 H 0.10 5.39 6.16 -2.91 -0.02 5.38 16 27 H 0.10 4.12 7.10 -2.91 -0.02 4.10 16 28 H 0.03 0.95 8.05 -2.39 -0.02 0.94 16 29 H 0.08 2.31 7.97 -2.39 -0.02 2.29 16 30 H 0.06 2.12 4.48 -2.39 -0.01 2.11 16 31 H 0.05 1.17 6.79 -2.39 -0.02 1.15 16 32 H 0.05 1.64 8.08 -2.39 -0.02 1.63 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.06 1.35 7.59 -2.39 -0.02 1.33 16 36 H 0.39 5.01 9.06 -74.06 -0.67 4.34 16 37 H 0.08 1.67 7.99 -2.39 -0.02 1.65 16 38 H 0.06 1.34 6.65 -2.39 -0.02 1.33 16 39 H 0.04 0.90 8.02 -2.39 -0.02 0.88 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 42 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -60.10 326.69 0.17 -59.93 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.34 Total: 30.36 kcal Atomic # 6 Polarization: -57.15 SS G_CDS: 3.13 Total: -54.01 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -3.36 Total: -63.10 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.97 Total: -14.02 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -60.10 0.17 -59.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336371001.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.587 kcal (2) G-P(sol) polarization free energy of solvation -60.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds