Wall clock time and date at job start Mon Mar 30 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38242 * 120.00086 * 2 1 4 4 C 1.38233 * 119.99765 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00451 * 0.25367 * 4 3 2 6 6 C 1.50695 * 120.00304 * 179.72407 * 5 4 3 7 7 C 1.53008 * 109.47074 * 300.00362 * 6 5 4 8 8 C 1.53001 * 109.47131 * 60.00311 * 6 5 4 9 9 C 1.53003 * 109.47372 * 180.02562 * 6 5 4 10 10 C 1.50699 * 109.47056 * 180.02562 * 9 6 5 11 11 O 1.21293 * 120.00282 * 359.97438 * 10 9 6 12 12 N 1.34779 * 119.99878 * 180.02562 * 10 9 6 13 13 C 1.46501 * 119.99619 * 359.97438 * 12 10 9 14 14 C 1.37094 * 119.99997 * 179.97438 * 12 10 9 15 15 H 1.07993 * 119.99966 * 22.40412 * 14 12 10 16 16 C 1.38953 * 119.99904 * 202.40313 * 14 12 10 17 17 N 1.31411 * 120.00030 * 11.59822 * 16 14 12 18 18 Si 1.86798 * 120.00054 * 191.59547 * 16 14 12 19 19 H 1.48498 * 109.47195 * 60.00240 * 18 16 14 20 20 H 1.48503 * 109.47291 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47264 * 300.00286 * 18 16 14 22 22 C 1.38243 * 119.99628 * 359.49197 * 5 4 3 23 23 C 1.38234 * 120.00029 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46946 * 90.00337 * 1 2 3 25 25 H 1.08996 * 109.47186 * 210.00324 * 1 2 3 26 26 H 1.09004 * 109.47343 * 330.00583 * 1 2 3 27 27 H 1.07998 * 120.00003 * 359.97257 * 3 2 1 28 28 H 1.08000 * 119.99587 * 179.97438 * 4 3 2 29 29 H 1.08993 * 109.47259 * 59.99897 * 7 6 5 30 30 H 1.09005 * 109.46643 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.46890 * 299.99271 * 7 6 5 32 32 H 1.08995 * 109.47396 * 59.99792 * 8 6 5 33 33 H 1.09001 * 109.47404 * 180.02562 * 8 6 5 34 34 H 1.09007 * 109.46602 * 299.99695 * 8 6 5 35 35 H 1.09003 * 109.46569 * 299.99680 * 9 6 5 36 36 H 1.08998 * 109.47241 * 59.99739 * 9 6 5 37 37 H 1.09004 * 109.46943 * 92.16050 * 13 12 10 38 38 H 1.08998 * 109.46771 * 212.15261 * 13 12 10 39 39 H 1.08993 * 109.47401 * 332.15592 * 13 12 10 40 40 H 0.96997 * 120.00053 * 179.97438 * 17 16 14 41 41 H 1.07997 * 119.99862 * 180.25381 * 22 5 4 42 42 H 1.08000 * 120.00063 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 -0.0042 6 6 5.7786 0.0000 -0.0099 7 6 6.2839 0.7236 -1.2598 8 6 6.2934 0.7189 1.2387 9 6 6.2887 -1.4425 -0.0151 10 6 7.7957 -1.4425 -0.0202 11 8 8.4021 -0.3920 -0.0202 12 7 8.4696 -2.6097 -0.0257 13 6 7.7370 -3.8784 -0.0263 14 6 9.8405 -2.6096 -0.0309 15 1 10.3818 -1.7459 0.3258 16 6 10.5335 -3.7210 -0.4950 17 7 9.8942 -4.6735 -1.1360 18 14 12.3740 -3.8609 -0.2080 19 1 12.6497 -3.8500 1.2511 20 1 12.8717 -5.1302 -0.7967 21 1 13.0639 -2.7137 -0.8507 22 6 3.5805 -1.1972 0.0011 23 6 2.1981 -1.1971 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5138 27 1 1.6582 2.1325 -0.0004 28 1 4.1205 2.1324 0.0001 29 1 5.9207 1.7512 -1.2566 30 1 7.3740 0.7239 -1.2636 31 1 5.9173 0.2113 -2.1493 32 1 5.9334 0.2035 2.1291 33 1 7.3834 0.7193 1.2344 34 1 5.9301 1.7467 1.2419 35 1 5.9287 -1.9583 0.8752 36 1 5.9220 -1.9544 -0.9048 37 1 7.5850 -4.2097 -1.0536 38 1 8.3108 -4.6294 0.5165 39 1 6.7702 -3.7399 0.4576 40 1 10.3780 -5.4491 -1.4603 41 1 4.1205 -2.1324 0.0015 42 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337537321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:37 Heat of formation + Delta-G solvation = -14.659932 kcal Electronic energy + Delta-G solvation = -21558.502955 eV Core-core repulsion = 18503.393484 eV Total energy + Delta-G solvation = -3055.109471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.97962 -38.48827 -35.99108 -34.41457 -31.68389 -31.54286 -30.94013 -27.91464 -26.66593 -26.54653 -26.05018 -24.17028 -22.29833 -21.77721 -19.63190 -18.09651 -16.89885 -16.61676 -15.42769 -15.12838 -14.75592 -14.63160 -14.38826 -13.98616 -13.86136 -13.36127 -13.30442 -13.16015 -13.11042 -12.31706 -12.28161 -11.93052 -11.75724 -11.66730 -11.35352 -11.25365 -11.15472 -11.07543 -10.85453 -10.65882 -10.43435 -10.39960 -10.31697 -10.23629 -9.96630 -8.97693 -8.77801 -8.29512 -8.11512 -7.61988 -6.28157 -3.84553 1.49382 1.54393 3.20076 3.25528 3.29446 3.89326 3.93760 4.15814 4.75567 4.86071 4.93120 5.11211 5.15191 5.16165 5.30106 5.47317 5.49118 5.53612 5.62302 5.67142 5.77361 5.80382 6.00629 6.09420 6.19383 6.21063 6.22157 6.24599 6.37102 6.42448 6.53070 6.58451 6.60447 6.68997 6.89870 6.91239 7.03181 7.09287 7.19481 7.25649 7.59105 8.17326 8.52924 9.23503 9.47818 10.04453 10.75405 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036029 B = 0.004030 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.963696 B = 6946.447608 C = 7479.836134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.062 4.062 6 C -0.003 4.003 7 C -0.145 4.145 8 C -0.145 4.145 9 C -0.122 4.122 10 C 0.450 3.550 11 O -0.581 6.581 12 N -0.448 5.448 13 C 0.113 3.887 14 C -0.306 4.306 15 H 0.098 0.902 16 C 0.030 3.970 17 N -0.885 5.885 18 Si 0.926 3.074 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.120 4.120 23 C -0.119 4.119 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.267 0.733 41 H 0.127 0.873 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 5.294 2.113 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.139 4.139 4 C -0.130 4.130 5 C -0.062 4.062 6 C -0.004 4.004 7 C -0.202 4.202 8 C -0.202 4.202 9 C -0.162 4.162 10 C 0.238 3.762 11 O -0.467 6.467 12 N -0.166 5.166 13 C -0.031 4.031 14 C -0.434 4.434 15 H 0.116 0.884 16 C -0.173 4.173 17 N -0.525 5.525 18 Si 0.753 3.247 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.138 4.138 23 C -0.137 4.137 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.145 0.855 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.918 5.577 2.025 16.054 hybrid contribution 0.704 -0.478 -0.003 0.851 sum -14.214 5.100 2.022 15.235 Atomic orbital electron populations 1.20741 0.91679 1.02350 1.01945 1.19840 0.95703 0.93379 1.01447 1.20948 0.94147 0.97200 1.01654 1.20967 0.93771 0.97878 1.00398 1.20089 0.95712 0.92953 0.97440 1.19171 0.88591 0.95193 0.97438 1.22094 1.04957 0.98108 0.95058 1.22097 1.04885 0.98202 0.95027 1.21694 0.95441 0.96733 1.02372 1.19969 0.88490 0.84279 0.83430 1.90354 1.70020 1.30592 1.55773 1.43610 1.06217 1.04106 1.62678 1.21492 0.92873 0.87155 1.01598 1.19612 0.80545 1.02961 1.40263 0.88417 1.25326 1.00235 0.96302 0.95459 1.69990 1.36627 1.10153 1.35682 0.86007 0.82509 0.77534 0.78683 1.19989 1.21019 1.19836 1.21265 0.93936 0.98327 1.00259 1.21000 0.94235 0.97254 1.01241 0.91565 0.91838 0.91919 0.86597 0.86232 0.93851 0.88462 0.93924 0.94007 0.88504 0.93815 0.90576 0.90356 0.92473 0.91402 0.95623 0.92295 0.85507 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.00 0.36 -0.59 16 2 C -0.10 -1.21 5.88 -104.62 -0.62 -1.82 16 3 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 4 C -0.11 -1.51 8.71 -39.59 -0.34 -1.86 16 5 C -0.06 -0.92 4.76 -104.62 -0.50 -1.42 16 6 C 0.00 -0.06 0.60 -155.66 -0.09 -0.15 16 7 C -0.15 -2.53 7.99 37.16 0.30 -2.23 16 8 C -0.15 -2.47 7.99 37.16 0.30 -2.17 16 9 C -0.12 -2.24 1.95 -27.88 -0.05 -2.30 16 10 C 0.45 10.57 7.04 -10.98 -0.08 10.49 16 11 O -0.58 -14.93 11.04 5.55 0.06 -14.87 16 12 N -0.45 -11.37 3.02 -122.20 -0.37 -11.74 16 13 C 0.11 2.52 8.52 59.85 0.51 3.03 16 14 C -0.31 -8.49 9.29 -14.93 -0.14 -8.62 16 15 H 0.10 2.82 7.41 -52.49 -0.39 2.43 16 16 C 0.03 0.78 5.11 -17.47 -0.09 0.69 16 17 N -0.88 -23.64 10.62 55.50 0.59 -23.05 16 18 Si 0.93 20.83 29.57 -169.99 -5.03 15.81 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C -0.12 -1.68 8.98 -39.58 -0.36 -2.03 16 23 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.12 1.50 7.10 -52.49 -0.37 1.13 16 29 H 0.04 0.66 7.39 -51.93 -0.38 0.28 16 30 H 0.10 2.00 5.51 -51.93 -0.29 1.72 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.94 5.51 -51.93 -0.29 1.65 16 34 H 0.04 0.65 7.39 -51.92 -0.38 0.27 16 35 H 0.08 1.29 6.77 -51.93 -0.35 0.94 16 36 H 0.08 1.38 7.49 -51.93 -0.39 0.99 16 37 H 0.06 1.33 7.54 -51.93 -0.39 0.94 16 38 H 0.07 1.60 7.06 -51.93 -0.37 1.23 16 39 H 0.03 0.47 6.36 -51.93 -0.33 0.14 16 40 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.13 1.70 5.90 -52.49 -0.31 1.39 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -29.42 328.24 -7.70 -37.12 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.33 Total: 4.47 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.57 Total: -12.69 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.22 Total: -34.79 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.06 Total: -14.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.42 -7.70 -37.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337537321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.459 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds