Wall clock time and date at job start Mon Mar 30 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38242 * 120.00086 * 2 1 4 4 C 1.38233 * 119.99765 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00451 * 0.25367 * 4 3 2 6 6 C 1.50695 * 120.00304 * 179.72407 * 5 4 3 7 7 C 1.53008 * 109.47074 * 300.00362 * 6 5 4 8 8 C 1.53001 * 109.47131 * 60.00311 * 6 5 4 9 9 C 1.53003 * 109.47372 * 180.02562 * 6 5 4 10 10 C 1.50699 * 109.47056 * 180.02562 * 9 6 5 11 11 O 1.21293 * 120.00282 * 359.97438 * 10 9 6 12 12 N 1.34779 * 119.99878 * 180.02562 * 10 9 6 13 13 C 1.46501 * 119.99619 * 359.97438 * 12 10 9 14 14 C 1.37094 * 119.99997 * 179.97438 * 12 10 9 15 15 H 1.07993 * 119.99966 * 22.40412 * 14 12 10 16 16 C 1.38953 * 119.99904 * 202.40313 * 14 12 10 17 17 N 1.31411 * 120.00030 * 11.59822 * 16 14 12 18 18 Si 1.86798 * 120.00054 * 191.59547 * 16 14 12 19 19 H 1.48498 * 109.47195 * 60.00240 * 18 16 14 20 20 H 1.48503 * 109.47291 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47264 * 300.00286 * 18 16 14 22 22 C 1.38243 * 119.99628 * 359.49197 * 5 4 3 23 23 C 1.38234 * 120.00029 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.46946 * 90.00337 * 1 2 3 25 25 H 1.08996 * 109.47186 * 210.00324 * 1 2 3 26 26 H 1.09004 * 109.47343 * 330.00583 * 1 2 3 27 27 H 1.07998 * 120.00003 * 359.97257 * 3 2 1 28 28 H 1.08000 * 119.99587 * 179.97438 * 4 3 2 29 29 H 1.08993 * 109.47259 * 59.99897 * 7 6 5 30 30 H 1.09005 * 109.46643 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.46890 * 299.99271 * 7 6 5 32 32 H 1.08995 * 109.47396 * 59.99792 * 8 6 5 33 33 H 1.09001 * 109.47404 * 180.02562 * 8 6 5 34 34 H 1.09007 * 109.46602 * 299.99695 * 8 6 5 35 35 H 1.09003 * 109.46569 * 299.99680 * 9 6 5 36 36 H 1.08998 * 109.47241 * 59.99739 * 9 6 5 37 37 H 1.09004 * 109.46943 * 92.16050 * 13 12 10 38 38 H 1.08998 * 109.46771 * 212.15261 * 13 12 10 39 39 H 1.08993 * 109.47401 * 332.15592 * 13 12 10 40 40 H 0.96997 * 120.00053 * 179.97438 * 17 16 14 41 41 H 1.07997 * 119.99862 * 180.25381 * 22 5 4 42 42 H 1.08000 * 120.00063 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 -0.0042 6 6 5.7786 0.0000 -0.0099 7 6 6.2839 0.7236 -1.2598 8 6 6.2934 0.7189 1.2387 9 6 6.2887 -1.4425 -0.0151 10 6 7.7957 -1.4425 -0.0202 11 8 8.4021 -0.3920 -0.0202 12 7 8.4696 -2.6097 -0.0257 13 6 7.7370 -3.8784 -0.0263 14 6 9.8405 -2.6096 -0.0309 15 1 10.3818 -1.7459 0.3258 16 6 10.5335 -3.7210 -0.4950 17 7 9.8942 -4.6735 -1.1360 18 14 12.3740 -3.8609 -0.2080 19 1 12.6497 -3.8500 1.2511 20 1 12.8717 -5.1302 -0.7967 21 1 13.0639 -2.7137 -0.8507 22 6 3.5805 -1.1972 0.0011 23 6 2.1981 -1.1971 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8901 0.5138 27 1 1.6582 2.1325 -0.0004 28 1 4.1205 2.1324 0.0001 29 1 5.9207 1.7512 -1.2566 30 1 7.3740 0.7239 -1.2636 31 1 5.9173 0.2113 -2.1493 32 1 5.9334 0.2035 2.1291 33 1 7.3834 0.7193 1.2344 34 1 5.9301 1.7467 1.2419 35 1 5.9287 -1.9583 0.8752 36 1 5.9220 -1.9544 -0.9048 37 1 7.5850 -4.2097 -1.0536 38 1 8.3108 -4.6294 0.5165 39 1 6.7702 -3.7399 0.4576 40 1 10.3780 -5.4491 -1.4603 41 1 4.1205 -2.1324 0.0015 42 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337537321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:37 Heat of formation + Delta-G solvation = -29.190516 kcal Electronic energy + Delta-G solvation = -21559.133049 eV Core-core repulsion = 18503.393484 eV Total energy + Delta-G solvation = -3055.739564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29232 -39.98541 -37.45696 -36.18983 -33.64987 -32.55125 -31.94931 -29.51569 -28.06575 -27.93380 -27.40062 -26.04048 -23.38526 -22.82736 -21.10841 -19.59531 -18.85007 -18.16994 -16.94632 -16.39507 -16.26812 -16.02764 -15.77322 -15.62781 -15.01286 -14.69142 -14.48629 -14.40626 -14.22289 -14.01510 -13.62070 -13.17610 -13.06949 -12.99064 -12.85246 -12.70403 -12.66827 -12.57609 -12.43440 -12.15145 -12.12826 -12.03741 -11.75100 -11.54149 -11.30318 -10.96125 -9.97948 -9.73696 -9.60946 -9.27373 -8.29388 -5.94078 0.51767 0.58559 1.39488 1.40687 1.51076 2.09394 2.29338 2.92031 3.10362 3.13131 3.73198 3.86093 4.10988 4.13175 4.15932 4.22823 4.29916 4.41122 4.58593 4.62376 4.67003 4.73730 4.80166 4.87768 4.90154 4.90698 5.02995 5.06029 5.08554 5.15621 5.20064 5.28961 5.35153 5.39711 5.46114 5.52443 5.56346 5.72790 5.78300 5.85714 6.14655 6.22135 6.53925 7.22688 7.54626 8.12076 8.72125 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036029 B = 0.004030 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.963696 B = 6946.447608 C = 7479.836134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.125 4.125 4 C -0.121 4.121 5 C -0.079 4.079 6 C 0.001 3.999 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.110 4.110 10 C 0.443 3.557 11 O -0.608 6.608 12 N -0.469 5.469 13 C 0.124 3.876 14 C -0.342 4.342 15 H 0.073 0.927 16 C -0.005 4.005 17 N -0.900 5.900 18 Si 0.987 3.013 19 H -0.268 1.268 20 H -0.272 1.272 21 H -0.277 1.277 22 C -0.133 4.133 23 C -0.125 4.125 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.125 0.875 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.271 0.729 41 H 0.128 0.872 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.649 5.257 2.376 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.103 4.103 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.079 4.079 6 C 0.001 3.999 7 C -0.197 4.197 8 C -0.196 4.196 9 C -0.150 4.150 10 C 0.233 3.767 11 O -0.495 6.495 12 N -0.189 5.189 13 C -0.020 4.020 14 C -0.470 4.470 15 H 0.091 0.909 16 C -0.206 4.206 17 N -0.539 5.539 18 Si 0.811 3.189 19 H -0.193 1.193 20 H -0.196 1.196 21 H -0.203 1.203 22 C -0.151 4.151 23 C -0.143 4.143 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.158 0.842 28 H 0.143 0.857 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.145 0.855 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.308 5.533 2.288 18.314 hybrid contribution 1.349 -0.397 -0.101 1.410 sum -15.959 5.136 2.187 16.907 Atomic orbital electron populations 1.20802 0.89361 1.03540 1.02914 1.20260 0.97479 0.92943 0.99650 1.21254 0.93629 0.98547 1.00803 1.21096 0.94679 0.97541 1.00530 1.19856 0.93971 0.94130 0.99934 1.19068 0.90444 0.93701 0.96702 1.21983 1.02394 0.99607 0.95708 1.21982 1.02438 0.99620 0.95593 1.21660 0.91194 0.98564 1.03568 1.20905 0.90686 0.83384 0.81708 1.90357 1.71373 1.31564 1.56239 1.43882 1.05863 1.05569 1.63550 1.21402 0.94034 0.85605 1.00928 1.19593 0.82188 1.03066 1.42141 0.90909 1.26053 1.04240 0.95583 0.94724 1.70071 1.38034 1.10304 1.35513 0.85091 0.77400 0.77626 0.78785 1.19330 1.19624 1.20261 1.21363 0.94911 0.97973 1.00815 1.21276 0.93692 0.98620 1.00702 0.90572 0.90816 0.90678 0.84248 0.85742 0.91918 0.92173 0.93860 0.93421 0.92047 0.91993 0.88746 0.89383 0.93796 0.93111 0.91614 0.91899 0.85458 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.23 0.71 -0.74 16 2 C -0.10 -2.06 5.88 -19.87 -0.12 -2.18 16 3 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 4 C -0.12 -2.98 8.71 22.27 0.19 -2.79 16 5 C -0.08 -2.21 4.76 -19.87 -0.09 -2.31 16 6 C 0.00 0.04 0.60 -52.93 -0.03 0.01 16 7 C -0.14 -4.90 7.99 71.98 0.58 -4.33 16 8 C -0.14 -4.72 7.99 71.98 0.58 -4.15 16 9 C -0.11 -3.99 1.95 29.85 0.06 -3.93 16 10 C 0.44 21.37 7.04 87.66 0.62 21.99 16 11 O -0.61 -32.69 11.04 -3.07 -0.03 -32.73 16 12 N -0.47 -24.45 3.02 -658.90 -1.99 -26.44 16 13 C 0.12 5.54 8.52 127.77 1.09 6.63 16 14 C -0.34 -19.64 9.29 84.04 0.78 -18.86 16 15 H 0.07 4.43 7.41 -2.91 -0.02 4.41 16 16 C 0.00 -0.26 5.11 84.93 0.43 0.17 16 17 N -0.90 -48.48 10.62 21.66 0.23 -48.25 16 18 Si 0.99 43.18 29.57 68.60 2.03 45.21 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.13 -3.43 8.98 22.27 0.20 -3.23 16 23 C -0.13 -2.72 9.70 22.27 0.22 -2.51 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 26 H 0.07 0.83 8.09 -2.38 -0.02 0.81 16 27 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 28 H 0.12 2.86 7.10 -2.91 -0.02 2.84 16 29 H 0.06 1.89 7.39 -2.39 -0.02 1.87 16 30 H 0.06 2.57 5.51 -2.38 -0.01 2.56 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 2.54 5.51 -2.39 -0.01 2.53 16 34 H 0.06 1.82 7.39 -2.38 -0.02 1.80 16 35 H 0.09 3.07 6.77 -2.39 -0.02 3.06 16 36 H 0.09 3.03 7.49 -2.39 -0.02 3.02 16 37 H 0.04 2.05 7.54 -2.39 -0.02 2.03 16 38 H 0.05 2.41 7.06 -2.39 -0.02 2.39 16 39 H 0.07 2.35 6.36 -2.39 -0.02 2.33 16 40 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.13 3.16 5.90 -2.91 -0.02 3.14 16 42 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -65.26 328.24 6.66 -58.60 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 1.00 Total: 22.21 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 5.43 Total: -18.60 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -1.76 Total: -74.69 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.03 Total: -32.73 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.26 6.66 -58.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337537321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.407 kcal (2) G-P(sol) polarization free energy of solvation -65.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds