Wall clock time and date at job start Mon Mar 30 2020 01:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99885 * 2 1 4 4 H 1.48498 * 109.46896 * 240.00372 * 3 2 1 5 5 H 1.48501 * 109.46939 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46972 * 120.00228 * 3 2 1 7 7 C 1.37877 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00203 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46662 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99682 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47107 * 179.97438 * 11 10 9 13 13 C 1.38169 * 120.03026 * 259.97939 * 12 11 10 14 14 C 1.38244 * 120.05436 * 180.02562 * 13 12 11 15 15 C 1.38282 * 120.11132 * 0.02562 * 14 13 12 16 16 C 1.38125 * 120.05678 * 359.67812 * 15 14 13 17 17 C 1.38705 * 120.02602 * 80.00143 * 12 11 10 18 18 O 1.35907 * 120.05563 * 359.97438 * 17 12 11 19 19 C 1.42902 * 117.00038 * 185.80821 * 18 17 12 20 20 C 1.54891 * 110.75589 * 156.21614 * 19 18 17 21 21 C 1.54267 * 104.30860 * 156.32541 * 20 19 18 22 22 C 1.53871 * 106.60167 * 336.32247 * 21 20 19 23 23 C 1.54262 * 106.60028 * 0.02562 * 22 21 20 24 24 H 0.96995 * 120.00138 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.46977 * 59.99968 * 9 7 2 26 26 H 1.08998 * 109.47043 * 300.00001 * 9 7 2 27 27 H 1.00895 * 111.00351 * 56.04865 * 10 9 7 28 28 H 1.09007 * 109.46963 * 59.99544 * 11 10 9 29 29 H 1.08997 * 109.46812 * 300.00085 * 11 10 9 30 30 H 1.07997 * 119.96816 * 0.04414 * 13 12 11 31 31 H 1.08001 * 119.93655 * 179.97438 * 14 13 12 32 32 H 1.07999 * 119.97032 * 179.97438 * 15 14 13 33 33 H 1.08001 * 120.02392 * 180.32813 * 16 15 14 34 34 H 1.09008 * 110.81391 * 32.88138 * 19 18 17 35 35 H 1.08997 * 110.48449 * 37.58153 * 20 19 18 36 36 H 1.08996 * 110.48687 * 275.06962 * 20 19 18 37 37 H 1.09003 * 110.02966 * 95.61189 * 21 20 19 38 38 H 1.09006 * 110.02846 * 217.03830 * 21 20 19 39 39 H 1.09001 * 110.02998 * 119.28635 * 22 21 20 40 40 H 1.08995 * 110.03562 * 240.66902 * 22 21 20 41 41 H 1.08996 * 110.49090 * 142.28175 * 23 22 21 42 42 H 1.09004 * 110.48491 * 264.79941 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9071 0.0001 12 6 2.5149 -6.0260 -0.0006 13 6 2.8227 -6.6789 -1.1787 14 6 3.7483 -7.7057 -1.1798 15 6 4.3680 -8.0824 -0.0023 16 6 4.0683 -7.4287 1.1770 17 6 3.1355 -6.4015 1.1817 18 8 2.8345 -5.7608 2.3418 19 6 3.6022 -6.1118 3.4949 20 6 3.5917 -4.9617 4.5323 21 6 3.8890 -5.6579 5.8764 22 6 3.4694 -7.1291 5.7117 23 6 2.9324 -7.2759 4.2730 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8405 -3.5487 0.7808 28 1 0.8801 -4.9817 -0.8897 29 1 0.8808 -4.9812 0.8903 30 1 2.3400 -6.3866 -2.0995 31 1 3.9872 -8.2150 -2.1017 32 1 5.0904 -8.8851 -0.0057 33 1 4.5565 -7.7198 2.0953 34 1 4.6236 -6.3711 3.2159 35 1 2.6136 -4.4815 4.5595 36 1 4.3676 -4.2320 4.3008 37 1 4.9537 -5.5961 6.1014 38 1 3.3107 -5.1918 6.6742 39 1 4.3306 -7.7814 5.8568 40 1 2.6882 -7.3773 6.4301 41 1 3.2282 -8.2365 3.8515 42 1 1.8475 -7.1716 4.2583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338341069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:04 Heat of formation + Delta-G solvation = -29.146700 kcal Electronic energy + Delta-G solvation = -21115.801035 eV Core-core repulsion = 18060.063371 eV Total energy + Delta-G solvation = -3055.737664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31304 -38.23904 -36.16085 -35.19710 -32.63005 -30.85203 -29.91322 -28.85567 -27.97450 -26.80644 -24.18524 -22.74605 -21.50721 -20.97020 -20.52032 -20.19999 -18.12556 -16.48300 -16.14806 -15.81939 -15.55665 -14.89070 -14.57588 -14.49181 -14.24963 -13.97063 -13.47401 -13.28464 -12.98748 -12.66121 -12.48966 -12.18342 -11.94410 -11.53140 -11.44496 -11.32741 -11.32325 -11.07768 -10.90996 -10.70298 -10.63184 -10.59967 -10.53364 -10.35700 -9.86135 -9.14453 -8.67385 -8.41447 -7.94118 -7.15604 -5.97070 -3.98493 1.51617 1.62621 3.29214 3.37310 3.40645 3.44258 3.94202 4.34724 4.43619 4.48725 4.68653 4.88284 4.96046 5.05850 5.20891 5.23505 5.31956 5.32833 5.38574 5.43958 5.50084 5.53820 5.65790 5.71034 5.75414 5.81328 5.88617 6.00073 6.06816 6.10575 6.13888 6.16831 6.41878 6.49566 6.62973 6.82309 7.01267 7.33737 7.51973 7.63456 7.85191 8.20152 8.50889 8.70717 9.10761 9.65797 11.14106 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004942 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.652056 B = 5664.027269 C = 7176.498320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.682 5.682 11 C 0.103 3.897 12 C -0.097 4.097 13 C -0.068 4.068 14 C -0.161 4.161 15 C -0.092 4.092 16 C -0.213 4.213 17 C 0.135 3.865 18 O -0.297 6.297 19 C 0.078 3.922 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.147 4.147 24 H 0.261 0.739 25 H 0.027 0.973 26 H -0.014 1.014 27 H 0.331 0.669 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 -17.816 7.968 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.312 5.312 11 C -0.026 4.026 12 C -0.098 4.098 13 C -0.086 4.086 14 C -0.179 4.179 15 C -0.110 4.110 16 C -0.231 4.231 17 C 0.089 3.911 18 O -0.210 6.210 19 C 0.021 3.979 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.184 4.184 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.004 0.996 27 H 0.147 0.853 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.146 0.854 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.802 -17.510 7.334 20.524 hybrid contribution 0.263 0.697 0.941 1.201 sum 8.065 -16.812 8.276 20.401 Atomic orbital electron populations 1.69958 1.06052 1.26780 1.51074 1.24977 0.94857 0.99254 0.95451 0.86556 0.79423 0.82756 0.78621 1.20179 1.21361 1.20318 1.21150 0.93442 0.90260 1.50123 0.92116 1.19551 0.90649 0.87329 0.95705 1.60780 1.20913 1.00493 1.49042 1.20682 0.93136 0.88441 1.00349 1.19455 1.00754 0.99139 0.90427 1.20922 0.96450 0.94313 0.96939 1.20993 0.99412 0.99502 0.97981 1.20820 0.98979 0.98941 0.92253 1.21163 1.02540 0.99926 0.99511 1.18885 0.94460 0.91819 0.85945 1.86183 1.57803 1.61503 1.15556 1.23517 0.94613 0.95615 0.84122 1.22399 1.03850 0.96856 0.92714 1.22073 1.01472 0.95222 0.97197 1.22035 1.00823 0.96758 0.96332 1.22931 1.01794 0.98334 0.95390 0.92932 0.95485 0.99597 0.85260 0.91193 0.95094 0.85360 0.86284 0.86417 0.85868 0.90195 0.89907 0.90506 0.91527 0.91145 0.91720 0.91423 0.91344 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.99 9.32 -34.44 -0.32 -15.31 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.34 5.44 -4.97 -0.03 5.31 16 10 N -0.68 -15.80 6.48 -116.33 -0.75 -16.56 16 11 C 0.10 2.03 5.48 -4.97 -0.03 2.01 16 12 C -0.10 -1.64 5.41 -104.48 -0.56 -2.21 16 13 C -0.07 -1.01 9.67 -39.60 -0.38 -1.39 16 14 C -0.16 -2.04 10.04 -39.56 -0.40 -2.44 16 15 C -0.09 -1.11 10.04 -39.61 -0.40 -1.51 16 16 C -0.21 -2.81 8.92 -39.43 -0.35 -3.16 16 17 C 0.13 2.13 6.65 -39.22 -0.26 1.87 16 18 O -0.30 -4.73 9.12 -19.45 -0.18 -4.91 16 19 C 0.08 0.95 2.69 -24.56 -0.07 0.88 16 20 C -0.12 -1.40 6.54 -25.07 -0.16 -1.56 16 21 C -0.12 -1.08 6.80 -25.61 -0.17 -1.26 16 22 C -0.12 -1.02 6.80 -25.62 -0.17 -1.19 16 23 C -0.15 -1.51 6.42 -24.90 -0.16 -1.67 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 27 H 0.33 7.63 8.66 -39.29 -0.34 7.29 16 28 H 0.07 1.34 8.00 -51.93 -0.42 0.92 16 29 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 30 H 0.13 1.76 8.04 -52.49 -0.42 1.34 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.12 1.36 5.59 -52.49 -0.29 1.07 16 34 H 0.08 0.90 6.26 -51.92 -0.33 0.57 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.65 7.73 -51.93 -0.40 0.24 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -31.58 343.05 -10.41 -41.99 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.80 Total: 3.98 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -3.57 Total: -20.10 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.02 Total: -43.28 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.18 Total: -4.91 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.58 -10.41 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338341069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.841 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds