Wall clock time and date at job start Mon Mar 30 2020 01:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99885 * 2 1 4 4 H 1.48498 * 109.46896 * 240.00372 * 3 2 1 5 5 H 1.48501 * 109.46939 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46972 * 120.00228 * 3 2 1 7 7 C 1.37877 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00203 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46662 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99682 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47107 * 179.97438 * 11 10 9 13 13 C 1.38169 * 120.03026 * 259.97939 * 12 11 10 14 14 C 1.38244 * 120.05436 * 180.02562 * 13 12 11 15 15 C 1.38282 * 120.11132 * 0.02562 * 14 13 12 16 16 C 1.38125 * 120.05678 * 359.67812 * 15 14 13 17 17 C 1.38705 * 120.02602 * 80.00143 * 12 11 10 18 18 O 1.35907 * 120.05563 * 359.97438 * 17 12 11 19 19 C 1.42902 * 117.00038 * 185.80821 * 18 17 12 20 20 C 1.54891 * 110.75589 * 156.21614 * 19 18 17 21 21 C 1.54267 * 104.30860 * 156.32541 * 20 19 18 22 22 C 1.53871 * 106.60167 * 336.32247 * 21 20 19 23 23 C 1.54262 * 106.60028 * 0.02562 * 22 21 20 24 24 H 0.96995 * 120.00138 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.46977 * 59.99968 * 9 7 2 26 26 H 1.08998 * 109.47043 * 300.00001 * 9 7 2 27 27 H 1.00895 * 111.00351 * 56.04865 * 10 9 7 28 28 H 1.09007 * 109.46963 * 59.99544 * 11 10 9 29 29 H 1.08997 * 109.46812 * 300.00085 * 11 10 9 30 30 H 1.07997 * 119.96816 * 0.04414 * 13 12 11 31 31 H 1.08001 * 119.93655 * 179.97438 * 14 13 12 32 32 H 1.07999 * 119.97032 * 179.97438 * 15 14 13 33 33 H 1.08001 * 120.02392 * 180.32813 * 16 15 14 34 34 H 1.09008 * 110.81391 * 32.88138 * 19 18 17 35 35 H 1.08997 * 110.48449 * 37.58153 * 20 19 18 36 36 H 1.08996 * 110.48687 * 275.06962 * 20 19 18 37 37 H 1.09003 * 110.02966 * 95.61189 * 21 20 19 38 38 H 1.09006 * 110.02846 * 217.03830 * 21 20 19 39 39 H 1.09001 * 110.02998 * 119.28635 * 22 21 20 40 40 H 1.08995 * 110.03562 * 240.66902 * 22 21 20 41 41 H 1.08996 * 110.49090 * 142.28175 * 23 22 21 42 42 H 1.09004 * 110.48491 * 264.79941 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9071 0.0001 12 6 2.5149 -6.0260 -0.0006 13 6 2.8227 -6.6789 -1.1787 14 6 3.7483 -7.7057 -1.1798 15 6 4.3680 -8.0824 -0.0023 16 6 4.0683 -7.4287 1.1770 17 6 3.1355 -6.4015 1.1817 18 8 2.8345 -5.7608 2.3418 19 6 3.6022 -6.1118 3.4949 20 6 3.5917 -4.9617 4.5323 21 6 3.8890 -5.6579 5.8764 22 6 3.4694 -7.1291 5.7117 23 6 2.9324 -7.2759 4.2730 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8405 -3.5487 0.7808 28 1 0.8801 -4.9817 -0.8897 29 1 0.8808 -4.9812 0.8903 30 1 2.3400 -6.3866 -2.0995 31 1 3.9872 -8.2150 -2.1017 32 1 5.0904 -8.8851 -0.0057 33 1 4.5565 -7.7198 2.0953 34 1 4.6236 -6.3711 3.2159 35 1 2.6136 -4.4815 4.5595 36 1 4.3676 -4.2320 4.3008 37 1 4.9537 -5.5961 6.1014 38 1 3.3107 -5.1918 6.6742 39 1 4.3306 -7.7814 5.8568 40 1 2.6882 -7.3773 6.4301 41 1 3.2282 -8.2365 3.8515 42 1 1.8475 -7.1716 4.2583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338341069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:03 Heat of formation + Delta-G solvation = -48.018057 kcal Electronic energy + Delta-G solvation = -21116.619359 eV Core-core repulsion = 18060.063371 eV Total energy + Delta-G solvation = -3056.555988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39341 -39.24034 -37.12674 -37.02861 -34.70218 -32.34817 -30.98063 -29.68672 -29.07682 -28.53437 -25.90187 -23.78809 -23.49624 -22.27100 -21.40037 -21.09820 -19.22018 -18.57256 -17.21811 -17.03471 -16.69420 -16.52177 -15.98366 -15.80662 -15.39772 -15.19075 -15.07789 -14.62778 -14.25198 -13.95711 -13.73223 -13.43490 -13.33306 -13.06399 -12.92746 -12.74270 -12.62614 -12.27291 -12.17123 -12.12742 -12.09145 -11.88217 -11.48753 -11.46904 -11.31731 -11.27392 -10.67473 -9.81037 -9.20389 -8.98984 -8.23358 -6.35505 0.41221 0.54621 1.39380 1.44001 1.52099 2.27978 2.39265 2.84117 3.09149 3.50452 3.61839 3.72013 3.85231 3.92696 3.95505 4.15174 4.17716 4.41195 4.41902 4.45084 4.50608 4.53028 4.60596 4.69124 4.70175 4.83242 4.89445 5.02412 5.04745 5.09693 5.10178 5.20083 5.22290 5.22972 5.40986 5.43927 5.56717 5.58399 5.67555 5.96075 5.99251 6.40186 6.58723 6.65729 6.84517 7.35107 8.88287 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.004942 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.652056 B = 5664.027269 C = 7176.498320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.210 3.790 10 N -0.676 5.676 11 C 0.111 3.889 12 C -0.131 4.131 13 C -0.077 4.077 14 C -0.158 4.158 15 C -0.081 4.081 16 C -0.212 4.212 17 C 0.120 3.880 18 O -0.328 6.328 19 C 0.069 3.931 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.143 4.143 24 H 0.266 0.734 25 H 0.002 0.998 26 H -0.044 1.044 27 H 0.331 0.669 28 H 0.067 0.933 29 H 0.014 0.986 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.764 -19.225 8.384 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.306 5.306 11 C -0.018 4.018 12 C -0.132 4.132 13 C -0.096 4.096 14 C -0.176 4.176 15 C -0.099 4.099 16 C -0.230 4.230 17 C 0.075 3.925 18 O -0.242 6.242 19 C 0.014 3.986 20 C -0.164 4.164 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.180 4.180 24 H 0.075 0.925 25 H 0.020 0.980 26 H -0.027 1.027 27 H 0.147 0.853 28 H 0.085 0.915 29 H 0.032 0.968 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.175 0.825 33 H 0.165 0.835 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.527 -18.946 7.754 23.019 hybrid contribution -0.596 1.046 0.801 1.446 sum 9.931 -17.900 8.554 22.186 Atomic orbital electron populations 1.70094 1.07866 1.28151 1.51309 1.25982 0.95821 1.03429 0.94370 0.85344 0.78112 0.77378 0.79206 1.19186 1.20458 1.19108 1.21462 0.93650 0.91349 1.51023 0.92003 1.19211 0.90634 0.88973 0.92991 1.60696 1.20102 1.00963 1.48842 1.20587 0.93923 0.88043 0.99287 1.19294 1.01948 0.99558 0.92358 1.21084 0.97247 0.95051 0.96222 1.21347 0.98109 0.98439 0.99712 1.21317 0.98451 0.98835 0.91260 1.21457 1.01538 0.98825 1.01174 1.19065 0.95215 0.92787 0.85471 1.86153 1.59019 1.62407 1.16596 1.23802 0.95142 0.96484 0.83217 1.22448 1.02209 0.97087 0.94664 1.22070 1.02640 0.95336 0.95328 1.22043 1.01799 0.96559 0.94957 1.22898 1.00536 0.98043 0.96556 0.92518 0.98013 1.02675 0.85266 0.91469 0.96819 0.85124 0.83213 0.82542 0.83500 0.88801 0.92565 0.90993 0.89818 0.90793 0.89599 0.90685 0.90025 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.98 45.71 29.54 68.60 2.03 47.74 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.54 -32.46 9.32 25.60 0.24 -32.22 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.21 12.22 5.44 85.56 0.47 12.68 16 10 N -0.68 -33.11 6.48 -521.97 -3.38 -36.49 16 11 C 0.11 4.66 5.48 85.56 0.47 5.13 16 12 C -0.13 -4.56 5.41 -19.77 -0.11 -4.66 16 13 C -0.08 -2.26 9.67 22.25 0.22 -2.05 16 14 C -0.16 -3.57 10.04 22.28 0.22 -3.34 16 15 C -0.08 -1.65 10.04 22.25 0.22 -1.43 16 16 C -0.21 -5.08 8.92 22.37 0.20 -4.88 16 17 C 0.12 3.80 6.65 22.50 0.15 3.95 16 18 O -0.33 -10.84 9.12 -92.51 -0.84 -11.68 16 19 C 0.07 1.67 2.69 32.00 0.09 1.76 16 20 C -0.13 -3.00 6.54 31.67 0.21 -2.79 16 21 C -0.12 -1.90 6.80 31.32 0.21 -1.69 16 22 C -0.12 -1.69 6.80 31.32 0.21 -1.47 16 23 C -0.14 -2.78 6.42 31.78 0.20 -2.58 16 24 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 25 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 26 H -0.04 -2.80 8.14 -2.39 -0.02 -2.81 16 27 H 0.33 16.11 8.66 -89.70 -0.78 15.33 16 28 H 0.07 2.78 8.00 -2.38 -0.02 2.76 16 29 H 0.01 0.61 7.86 -2.39 -0.02 0.59 16 30 H 0.13 3.60 8.04 -2.91 -0.02 3.58 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.15 2.74 5.59 -2.91 -0.02 2.73 16 34 H 0.09 1.95 6.26 -2.38 -0.01 1.94 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.36 7.73 -2.39 -0.02 1.34 16 42 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -70.81 343.05 1.77 -69.04 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.22 Total: 22.60 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.46 Total: -33.00 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -3.10 Total: -94.70 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.84 Total: -11.68 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -70.81 1.77 -69.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338341069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.024 kcal (2) G-P(sol) polarization free energy of solvation -70.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds