Wall clock time and date at job start Mon Mar 30 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48508 * 109.47182 * 239.99642 * 3 2 1 5 5 H 1.48507 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47480 * 119.99615 * 3 2 1 7 7 C 1.37883 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99689 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00293 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47297 * 180.02562 * 11 10 9 13 13 C 1.38288 * 119.97323 * 270.02439 * 12 11 10 14 14 C 1.38241 * 120.11024 * 180.02562 * 13 12 11 15 15 C 1.38166 * 120.05672 * 359.68220 * 14 13 12 16 16 C 1.38709 * 119.94305 * 0.57084 * 15 14 13 17 17 O 1.35904 * 120.05613 * 179.72198 * 16 15 14 18 18 C 1.42901 * 116.99735 * 5.19135 * 17 16 15 19 19 C 1.54891 * 110.48386 * 156.18130 * 18 17 16 20 20 C 1.54885 * 102.74862 * 156.61893 * 19 18 17 21 21 C 1.54269 * 104.19537 * 322.05639 * 20 19 18 22 22 C 1.53869 * 106.59671 * 23.61295 * 21 20 19 23 23 C 1.38126 * 119.97290 * 90.00226 * 12 11 10 24 24 H 0.97003 * 120.00541 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47349 * 60.00098 * 9 7 2 26 26 H 1.09002 * 109.47369 * 299.99924 * 9 7 2 27 27 H 1.00894 * 111.00358 * 303.95763 * 10 9 7 28 28 H 1.09007 * 109.47048 * 60.00275 * 11 10 9 29 29 H 1.08996 * 109.47554 * 300.00586 * 11 10 9 30 30 H 1.08003 * 119.94392 * 0.02562 * 13 12 11 31 31 H 1.08005 * 119.97120 * 179.97438 * 14 13 12 32 32 H 1.08000 * 120.02861 * 180.29953 * 15 14 13 33 33 H 1.09000 * 110.54212 * 33.57254 * 18 17 16 34 34 H 1.08998 * 110.75591 * 274.93350 * 19 18 17 35 35 H 1.09002 * 110.75844 * 38.30483 * 19 18 17 36 36 H 1.09002 * 110.48925 * 80.73572 * 20 19 18 37 37 H 1.08999 * 110.48841 * 203.37977 * 20 19 18 38 38 H 1.08996 * 110.03168 * 264.32477 * 21 20 19 39 39 H 1.09008 * 110.07150 * 142.91480 * 21 20 19 40 40 H 1.09003 * 110.03018 * 240.71304 * 22 21 20 41 41 H 1.09004 * 110.07772 * 119.30784 * 22 21 20 42 42 H 1.08002 * 120.02460 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5147 -6.0260 0.0018 13 6 2.9780 -6.5392 -1.1959 14 6 3.9036 -7.5660 -1.1986 15 6 4.3731 -8.0776 -0.0041 16 6 3.9061 -7.5681 1.1985 17 8 4.3622 -8.0734 2.3748 18 6 5.4047 -9.0481 2.3013 19 6 6.2075 -9.0839 3.6255 20 6 6.8220 -10.5056 3.6142 21 6 5.7113 -11.3932 3.0156 22 6 4.8102 -10.4665 2.1809 23 6 2.9769 -6.5378 1.1986 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8404 -3.5487 -0.7807 28 1 0.8800 -4.9818 -0.8887 29 1 0.8806 -4.9813 0.8913 30 1 2.6160 -6.1372 -2.1307 31 1 4.2636 -7.9654 -2.1353 32 1 5.0999 -8.8764 -0.0068 33 1 6.0655 -8.8387 1.4602 34 1 6.9898 -8.3249 3.6236 35 1 5.5457 -8.9560 4.4821 36 1 7.7118 -10.5317 2.9850 37 1 7.0613 -10.8259 4.6282 38 1 5.1324 -11.8565 3.8146 39 1 6.1491 -12.1615 2.3782 40 1 3.7939 -10.4800 2.5747 41 1 4.8104 -10.7841 1.1382 42 1 2.6147 -6.1366 2.1337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339325854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:03 Heat of formation + Delta-G solvation = -30.583977 kcal Electronic energy + Delta-G solvation = -20274.505154 eV Core-core repulsion = 17218.705164 eV Total energy + Delta-G solvation = -3055.799989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35777 -38.44539 -36.52584 -35.03912 -32.61226 -30.90992 -30.04834 -29.07739 -28.00031 -26.93595 -24.32915 -22.42719 -21.90438 -21.30717 -20.80508 -19.99087 -17.97700 -16.43023 -16.41135 -16.00265 -15.80022 -14.97234 -14.71175 -14.61926 -14.27150 -13.77290 -13.68759 -13.37569 -13.05660 -13.01896 -12.51916 -12.17621 -11.99666 -11.60536 -11.51069 -11.45300 -11.43560 -11.18705 -10.99044 -10.84303 -10.75274 -10.67228 -10.64086 -10.46560 -9.91304 -9.20878 -8.64737 -8.45959 -8.04644 -7.28446 -6.01632 -4.03589 1.49385 1.61890 3.15388 3.35411 3.38862 3.42489 3.91762 4.18591 4.24169 4.45429 4.53000 4.81098 4.92752 5.00474 5.08432 5.11321 5.17007 5.24970 5.26289 5.34173 5.47318 5.49292 5.52507 5.56029 5.63035 5.68308 5.72710 5.81788 5.89116 5.95105 6.02272 6.24086 6.26479 6.46113 6.57224 6.85188 6.96759 7.24906 7.42230 7.54678 7.79242 8.13217 8.39696 8.60991 9.05292 9.61113 11.09466 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029010 B = 0.002895 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.968551 B = 9669.502059 C =10158.887021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.683 5.683 11 C 0.093 3.907 12 C -0.027 4.027 13 C -0.153 4.153 14 C -0.084 4.084 15 C -0.218 4.218 16 C 0.126 3.874 17 O -0.307 6.307 18 C 0.078 3.922 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.149 4.149 23 C -0.131 4.131 24 H 0.262 0.738 25 H -0.013 1.013 26 H 0.029 0.971 27 H 0.330 0.670 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.201 -23.229 2.848 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.314 5.314 11 C -0.036 4.036 12 C -0.028 4.028 13 C -0.172 4.172 14 C -0.102 4.102 15 C -0.237 4.237 16 C 0.081 3.919 17 O -0.221 6.221 18 C 0.022 3.978 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.186 4.186 23 C -0.150 4.150 24 H 0.072 0.928 25 H 0.005 0.995 26 H 0.047 0.953 27 H 0.147 0.853 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.040 -23.038 3.739 25.819 hybrid contribution 0.158 0.769 -1.148 1.391 sum 11.199 -22.269 2.591 25.061 Atomic orbital electron populations 1.69949 1.06081 1.26917 1.50844 1.24988 0.94888 0.99364 0.95332 0.86531 0.79410 0.82597 0.78677 1.20266 1.21340 1.20120 1.21145 0.93520 0.90190 1.50448 0.91979 1.19585 0.90582 0.87229 0.95881 1.60720 1.21055 1.00448 1.49144 1.20909 0.93282 0.88613 1.00843 1.19837 0.96006 0.94995 0.91965 1.20995 0.99861 0.98520 0.97825 1.20830 0.96271 0.95999 0.97085 1.21136 1.05413 1.04740 0.92376 1.18971 0.94771 0.93654 0.84505 1.86130 1.52037 1.55553 1.28379 1.23334 0.88033 0.87076 0.99390 1.22553 0.98928 0.97369 0.96820 1.22310 0.98032 0.94292 1.01455 1.22061 0.96789 0.97779 0.99337 1.22692 1.00667 0.94492 1.00793 1.20330 0.99166 0.96397 0.99091 0.92843 0.99508 0.95279 0.85326 0.95087 0.90695 0.86163 0.86229 0.86000 0.90290 0.90589 0.89999 0.91289 0.90911 0.91433 0.91594 0.90411 0.91312 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.28 55.43 0.74 -26.40 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.85 9.32 -34.44 -0.32 -15.17 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.17 5.44 -4.98 -0.03 5.14 16 10 N -0.68 -15.17 6.48 -116.34 -0.75 -15.92 16 11 C 0.09 1.72 5.81 -4.98 -0.03 1.69 16 12 C -0.03 -0.45 5.39 -104.65 -0.56 -1.01 16 13 C -0.15 -2.21 9.70 -39.56 -0.38 -2.59 16 14 C -0.08 -1.06 10.04 -39.61 -0.40 -1.45 16 15 C -0.22 -2.76 8.87 -39.43 -0.35 -3.11 16 16 C 0.13 1.82 6.66 -39.22 -0.26 1.56 16 17 O -0.31 -4.16 9.85 -19.44 -0.19 -4.35 16 18 C 0.08 0.78 2.69 -25.07 -0.07 0.71 16 19 C -0.12 -1.00 6.62 -24.74 -0.16 -1.16 16 20 C -0.12 -0.79 6.83 -25.07 -0.17 -0.96 16 21 C -0.12 -0.81 6.80 -25.61 -0.17 -0.98 16 22 C -0.15 -1.26 6.28 -25.62 -0.16 -1.42 16 23 C -0.13 -2.10 9.64 -39.43 -0.38 -2.48 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.33 7.07 8.72 -39.29 -0.34 6.72 16 28 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 30 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 31 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.12 1.26 5.53 -52.49 -0.29 0.97 16 33 H 0.08 0.75 6.27 -51.93 -0.33 0.42 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.07 0.54 7.71 -51.93 -0.40 0.14 16 42 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -31.02 343.91 -10.41 -41.43 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.81 Total: 2.83 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -3.55 Total: -19.72 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.02 Total: -42.32 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.19 Total: -4.35 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.02 -10.41 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339325854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.844 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds