Wall clock time and date at job start Mon Mar 30 2020 01:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48508 * 109.47182 * 239.99642 * 3 2 1 5 5 H 1.48507 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47480 * 119.99615 * 3 2 1 7 7 C 1.37883 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99814 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99689 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00293 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47297 * 180.02562 * 11 10 9 13 13 C 1.38288 * 119.97323 * 270.02439 * 12 11 10 14 14 C 1.38241 * 120.11024 * 180.02562 * 13 12 11 15 15 C 1.38166 * 120.05672 * 359.68220 * 14 13 12 16 16 C 1.38709 * 119.94305 * 0.57084 * 15 14 13 17 17 O 1.35904 * 120.05613 * 179.72198 * 16 15 14 18 18 C 1.42901 * 116.99735 * 5.19135 * 17 16 15 19 19 C 1.54891 * 110.48386 * 156.18130 * 18 17 16 20 20 C 1.54885 * 102.74862 * 156.61893 * 19 18 17 21 21 C 1.54269 * 104.19537 * 322.05639 * 20 19 18 22 22 C 1.53869 * 106.59671 * 23.61295 * 21 20 19 23 23 C 1.38126 * 119.97290 * 90.00226 * 12 11 10 24 24 H 0.97003 * 120.00541 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47349 * 60.00098 * 9 7 2 26 26 H 1.09002 * 109.47369 * 299.99924 * 9 7 2 27 27 H 1.00894 * 111.00358 * 303.95763 * 10 9 7 28 28 H 1.09007 * 109.47048 * 60.00275 * 11 10 9 29 29 H 1.08996 * 109.47554 * 300.00586 * 11 10 9 30 30 H 1.08003 * 119.94392 * 0.02562 * 13 12 11 31 31 H 1.08005 * 119.97120 * 179.97438 * 14 13 12 32 32 H 1.08000 * 120.02861 * 180.29953 * 15 14 13 33 33 H 1.09000 * 110.54212 * 33.57254 * 18 17 16 34 34 H 1.08998 * 110.75591 * 274.93350 * 19 18 17 35 35 H 1.09002 * 110.75844 * 38.30483 * 19 18 17 36 36 H 1.09002 * 110.48925 * 80.73572 * 20 19 18 37 37 H 1.08999 * 110.48841 * 203.37977 * 20 19 18 38 38 H 1.08996 * 110.03168 * 264.32477 * 21 20 19 39 39 H 1.09008 * 110.07150 * 142.91480 * 21 20 19 40 40 H 1.09003 * 110.03018 * 240.71304 * 22 21 20 41 41 H 1.09004 * 110.07772 * 119.30784 * 22 21 20 42 42 H 1.08002 * 120.02460 * 0.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5147 -6.0260 0.0018 13 6 2.9780 -6.5392 -1.1959 14 6 3.9036 -7.5660 -1.1986 15 6 4.3731 -8.0776 -0.0041 16 6 3.9061 -7.5681 1.1985 17 8 4.3622 -8.0734 2.3748 18 6 5.4047 -9.0481 2.3013 19 6 6.2075 -9.0839 3.6255 20 6 6.8220 -10.5056 3.6142 21 6 5.7113 -11.3932 3.0156 22 6 4.8102 -10.4665 2.1809 23 6 2.9769 -6.5378 1.1986 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8404 -3.5487 -0.7807 28 1 0.8800 -4.9818 -0.8887 29 1 0.8806 -4.9813 0.8913 30 1 2.6160 -6.1372 -2.1307 31 1 4.2636 -7.9654 -2.1353 32 1 5.0999 -8.8764 -0.0068 33 1 6.0655 -8.8387 1.4602 34 1 6.9898 -8.3249 3.6236 35 1 5.5457 -8.9560 4.4821 36 1 7.7118 -10.5317 2.9850 37 1 7.0613 -10.8259 4.6282 38 1 5.1324 -11.8565 3.8146 39 1 6.1491 -12.1615 2.3782 40 1 3.7939 -10.4800 2.5747 41 1 4.8104 -10.7841 1.1382 42 1 2.6147 -6.1366 2.1337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339325854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:03 Heat of formation + Delta-G solvation = -48.673413 kcal Electronic energy + Delta-G solvation = -20275.289570 eV Core-core repulsion = 17218.705164 eV Total energy + Delta-G solvation = -3056.584406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34422 -39.43803 -37.51009 -36.65006 -34.63612 -32.31147 -31.16419 -29.72052 -28.89407 -28.64413 -25.98801 -23.56306 -23.50731 -22.73230 -21.40087 -20.90788 -19.10578 -18.42083 -17.33423 -17.05270 -16.78020 -16.70113 -16.19452 -15.67305 -15.39426 -15.19519 -14.87954 -14.59311 -14.33742 -14.13276 -13.81556 -13.38300 -13.20278 -13.10900 -12.91018 -12.72922 -12.59595 -12.39429 -12.15321 -12.11119 -12.05227 -11.84951 -11.53439 -11.46560 -11.34210 -11.29914 -10.67068 -9.82914 -9.21834 -9.06387 -8.23475 -6.35142 0.35124 0.51138 1.40760 1.44789 1.52851 2.23293 2.39719 2.78675 3.09542 3.53061 3.61629 3.68208 3.86704 3.91149 3.94128 4.12810 4.24592 4.30619 4.41241 4.46794 4.51191 4.53026 4.54006 4.69416 4.72032 4.83392 4.88928 5.03420 5.05457 5.08192 5.12258 5.20870 5.22745 5.25690 5.37630 5.42693 5.48708 5.58755 5.69606 5.86068 5.99501 6.40301 6.54608 6.66949 6.85633 7.35583 8.87958 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029010 B = 0.002895 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.968551 B = 9669.502059 C =10158.887021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.683 5.683 11 C 0.097 3.903 12 C -0.043 4.043 13 C -0.160 4.160 14 C -0.075 4.075 15 C -0.209 4.209 16 C 0.121 3.879 17 O -0.326 6.326 18 C 0.067 3.933 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.147 4.147 23 C -0.154 4.154 24 H 0.266 0.734 25 H -0.035 1.035 26 H 0.000 1.000 27 H 0.336 0.664 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.653 -24.518 1.980 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.081 3.919 10 N -0.314 5.314 11 C -0.032 4.032 12 C -0.043 4.043 13 C -0.179 4.179 14 C -0.093 4.093 15 C -0.228 4.228 16 C 0.076 3.924 17 O -0.240 6.240 18 C 0.011 3.989 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.185 4.185 23 C -0.174 4.174 24 H 0.075 0.925 25 H -0.017 1.017 26 H 0.019 0.981 27 H 0.153 0.847 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.506 -24.358 2.874 28.000 hybrid contribution -0.592 1.051 -0.842 1.471 sum 12.914 -23.307 2.032 26.722 Atomic orbital electron populations 1.70079 1.07806 1.28172 1.51304 1.25970 0.95829 1.03428 0.94463 0.85359 0.78105 0.77478 0.79188 1.18947 1.20610 1.19425 1.21496 0.93785 0.91393 1.50968 0.91843 1.19234 0.90596 0.88671 0.93423 1.60572 1.20457 1.00876 1.49512 1.20858 0.93957 0.87791 1.00573 1.19590 0.96585 0.95036 0.93112 1.21170 1.00311 0.99143 0.97262 1.21220 0.94804 0.94657 0.98570 1.21474 1.05073 1.04709 0.91509 1.19028 0.94420 0.93279 0.85665 1.86120 1.53098 1.56455 1.28345 1.23686 0.87541 0.87059 1.00585 1.22609 0.98670 0.99045 0.95641 1.22313 0.98165 0.92509 1.02444 1.22071 0.96528 0.97710 0.99389 1.22680 1.00103 0.93953 1.01717 1.20299 1.00688 0.97920 0.98462 0.92511 1.01693 0.98147 0.84661 0.94551 0.91676 0.85156 0.82617 0.83125 0.89379 0.90423 0.91114 0.90053 0.89848 0.91282 0.90011 0.92043 0.90332 0.86790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.28 21.45 0.28 -57.10 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.54 -31.65 9.32 25.60 0.24 -31.41 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 11.59 5.44 85.56 0.47 12.06 16 10 N -0.68 -31.36 6.48 -521.98 -3.38 -34.74 16 11 C 0.10 3.74 5.81 85.56 0.50 4.24 16 12 C -0.04 -1.41 5.39 -19.88 -0.11 -1.52 16 13 C -0.16 -4.40 9.70 22.28 0.22 -4.19 16 14 C -0.07 -1.66 10.04 22.25 0.22 -1.44 16 15 C -0.21 -4.77 8.87 22.37 0.20 -4.57 16 16 C 0.12 3.44 6.66 22.50 0.15 3.59 16 17 O -0.33 -8.77 9.85 -92.47 -0.91 -9.68 16 18 C 0.07 1.24 2.69 31.67 0.09 1.32 16 19 C -0.12 -1.90 6.62 31.88 0.21 -1.69 16 20 C -0.12 -1.20 6.83 31.67 0.22 -0.99 16 21 C -0.12 -1.29 6.80 31.32 0.21 -1.07 16 22 C -0.15 -2.22 6.28 31.32 0.20 -2.02 16 23 C -0.15 -5.12 9.64 22.36 0.22 -4.90 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.03 -2.03 8.14 -2.38 -0.02 -2.05 16 26 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 27 H 0.34 14.64 8.72 -89.70 -0.78 13.86 16 28 H 0.04 1.35 8.09 -2.38 -0.02 1.33 16 29 H 0.06 2.58 8.08 -2.39 -0.02 2.56 16 30 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.15 2.53 5.53 -2.91 -0.02 2.51 16 33 H 0.09 1.45 6.27 -2.39 -0.01 1.43 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.06 1.13 8.07 -2.39 -0.02 1.11 16 41 H 0.08 1.02 7.71 -2.38 -0.02 1.00 16 42 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -67.90 343.91 1.71 -66.19 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.21 Total: 20.30 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 3.48 Total: -32.04 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -3.10 Total: -91.84 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.91 Total: -9.68 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.90 1.71 -66.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339325854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.517 kcal (2) G-P(sol) polarization free energy of solvation -67.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds