Wall clock time and date at job start Mon Mar 30 2020 01:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00157 * 2 1 4 4 H 1.48500 * 109.46905 * 246.26145 * 3 2 1 5 5 H 1.48501 * 109.46828 * 6.26069 * 3 2 1 6 6 H 1.48495 * 109.47099 * 126.26135 * 3 2 1 7 7 C 1.37877 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99599 * 198.98971 * 7 2 1 9 9 C 1.50693 * 120.00466 * 18.71613 * 7 2 1 10 10 N 1.46908 * 109.46842 * 295.19674 * 9 7 2 11 11 C 1.46902 * 110.99708 * 225.80819 * 10 9 7 12 12 C 1.50702 * 109.46985 * 73.20138 * 11 10 9 13 13 C 1.38239 * 119.99992 * 262.43244 * 12 11 10 14 14 C 1.38232 * 119.99942 * 179.77036 * 13 12 11 15 15 C 1.38237 * 119.99826 * 0.50051 * 14 13 12 16 16 C 1.38230 * 119.99885 * 359.75472 * 15 14 13 17 17 C 1.38226 * 120.00152 * 82.70626 * 12 11 10 18 18 C 1.46898 * 111.00213 * 101.85693 * 10 9 7 19 19 C 1.52999 * 109.47327 * 199.15862 * 18 10 9 20 20 C 1.53002 * 115.54848 * 66.27632 * 19 18 10 21 21 O 1.42905 * 109.47252 * 304.95897 * 20 19 18 22 22 C 1.52998 * 117.49583 * 280.61408 * 19 18 10 23 23 C 1.52998 * 117.50018 * 211.95049 * 19 18 10 24 24 H 0.97000 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47055 * 55.18812 * 9 7 2 26 26 H 1.08992 * 109.47461 * 175.19122 * 9 7 2 27 27 H 1.08996 * 109.47331 * 193.20375 * 11 10 9 28 28 H 1.09004 * 109.46918 * 313.20487 * 11 10 9 29 29 H 1.08001 * 119.99796 * 359.97438 * 13 12 11 30 30 H 1.07999 * 120.00164 * 180.23475 * 14 13 12 31 31 H 1.08000 * 119.99929 * 179.72663 * 15 14 13 32 32 H 1.08000 * 119.99917 * 179.97438 * 16 15 14 33 33 H 1.08006 * 119.99987 * 0.02562 * 17 12 11 34 34 H 1.09006 * 109.46773 * 319.15983 * 18 10 9 35 35 H 1.08996 * 109.47306 * 79.15419 * 18 10 9 36 36 H 1.08997 * 109.47166 * 64.96181 * 20 19 18 37 37 H 1.08996 * 109.47157 * 184.95969 * 20 19 18 38 38 H 0.96695 * 114.00027 * 185.00360 * 21 20 19 39 39 H 1.08995 * 117.50430 * 359.97438 * 22 19 18 40 40 H 1.09001 * 117.49565 * 145.02145 * 22 19 18 41 41 H 1.08997 * 117.49700 * 214.97521 * 23 19 18 42 42 H 1.08996 * 117.49781 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.9848 1.7645 -1.2816 5 1 1.2914 2.7423 0.1527 6 1 3.2138 1.6323 1.1289 7 6 2.0045 -1.1941 -0.0005 8 1 3.0405 -1.2196 0.3038 9 6 1.3108 -2.4645 -0.4198 10 7 0.2400 -2.7762 0.5364 11 6 0.2697 -4.1950 0.9159 12 6 1.4398 -4.4454 1.8321 13 6 2.6216 -4.9495 1.3220 14 6 3.6964 -5.1747 2.1616 15 6 3.5860 -4.9056 3.5131 16 6 2.4025 -4.4065 4.0239 17 6 1.3294 -4.1764 3.1835 18 6 -1.0739 -2.4035 -0.0047 19 6 -2.0820 -2.2851 1.1402 20 6 -1.8266 -1.1460 2.1291 21 8 -0.5011 -1.2568 2.6515 22 6 -2.6774 -3.5812 1.6938 23 6 -3.5380 -2.6467 0.8396 24 1 -0.4850 0.8401 0.0004 25 1 0.8834 -2.3339 -1.4141 26 1 2.0308 -3.2825 -0.4385 27 1 -0.6561 -4.4531 1.4300 28 1 0.3715 -4.8085 0.0207 29 1 2.7062 -5.1642 0.2670 30 1 4.6209 -5.5650 1.7625 31 1 4.4242 -5.0857 4.1698 32 1 2.3161 -4.1967 5.0798 33 1 0.4045 -3.7871 3.5828 34 1 -0.9961 -1.4465 -0.5207 35 1 -1.4084 -3.1681 -0.7057 36 1 -1.9370 -0.1896 1.6181 37 1 -2.5454 -1.2063 2.9463 38 1 -0.2955 -0.6123 3.3424 39 1 -2.3514 -4.5181 1.2423 40 1 -2.8877 -3.6220 2.7626 41 1 -4.3139 -2.0733 1.3468 42 1 -3.7777 -2.9685 -0.1738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341916772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:31 Heat of formation + Delta-G solvation = 33.153390 kcal Electronic energy + Delta-G solvation = -22745.591268 eV Core-core repulsion = 19692.555138 eV Total energy + Delta-G solvation = -3053.036130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.80601 -37.87284 -35.26655 -34.42652 -32.34462 -30.49146 -30.22278 -27.58735 -26.35683 -25.12624 -23.30198 -22.10228 -21.80181 -21.10403 -19.83261 -18.15612 -16.16142 -16.08713 -15.95775 -15.02733 -14.63451 -14.54693 -14.30982 -13.94476 -13.50735 -13.27129 -12.87273 -12.71878 -12.40933 -12.07750 -11.90347 -11.51669 -11.34922 -11.26137 -10.87449 -10.80937 -10.78379 -10.52800 -10.31433 -10.11284 -9.97522 -9.58996 -9.42654 -9.03278 -8.84204 -8.49867 -8.21406 -8.16072 -7.87083 -6.35417 -5.67398 -3.80006 2.06909 2.11620 3.40715 3.44074 3.50288 4.33666 4.49562 4.58366 5.18947 5.27057 5.45471 5.50269 5.53091 5.56772 5.62934 5.79690 5.93094 5.97441 6.06517 6.11053 6.20614 6.25376 6.28666 6.35125 6.41888 6.48547 6.58830 6.73955 6.75538 6.78499 6.91934 7.01551 7.10620 7.12326 7.16382 7.38914 7.49471 7.70796 7.73527 8.25025 8.58126 8.80103 8.90575 8.97398 9.29501 9.83641 11.21137 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.009428 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.721897 B = 2969.196075 C = 4282.527024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.085 3.915 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.494 4.494 8 H 0.049 0.951 9 C 0.183 3.817 10 N -0.467 5.467 11 C 0.075 3.925 12 C -0.039 4.039 13 C -0.115 4.115 14 C -0.128 4.128 15 C -0.137 4.137 16 C -0.130 4.130 17 C -0.083 4.083 18 C 0.083 3.917 19 C -0.071 4.071 20 C 0.143 3.857 21 O -0.504 6.504 22 C -0.191 4.191 23 C -0.185 4.185 24 H 0.249 0.751 25 H -0.008 1.008 26 H 0.012 0.988 27 H 0.073 0.927 28 H 0.008 0.992 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.151 0.849 35 H -0.022 1.022 36 H 0.047 0.953 37 H 0.001 0.999 38 H 0.344 0.656 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 -6.313 4.901 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.117 4.117 3 Si 0.708 3.292 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.059 3.941 10 N -0.190 5.190 11 C -0.053 4.053 12 C -0.040 4.040 13 C -0.134 4.134 14 C -0.146 4.146 15 C -0.156 4.156 16 C -0.148 4.148 17 C -0.102 4.102 18 C -0.045 4.045 19 C -0.072 4.072 20 C 0.064 3.936 21 O -0.303 6.303 22 C -0.228 4.228 23 C -0.223 4.223 24 H 0.059 0.941 25 H 0.010 0.990 26 H 0.030 0.970 27 H 0.091 0.909 28 H 0.026 0.974 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.168 0.832 35 H -0.004 1.004 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.186 0.814 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.142 -6.405 4.846 8.625 hybrid contribution 0.202 0.910 -0.183 0.950 sum -2.940 -5.495 4.663 7.784 Atomic orbital electron populations 1.69687 1.05409 1.24165 1.49350 1.24786 0.94398 0.98113 0.94403 0.86901 0.79971 0.84120 0.78193 1.21005 1.21855 1.20646 1.20907 0.96117 0.91438 1.44825 0.93305 1.19929 0.89223 0.95086 0.89864 1.62392 1.02532 1.10409 1.43706 1.21388 0.95411 0.93278 0.95218 1.19865 0.95146 0.94732 0.94247 1.21006 0.93297 1.00204 0.98890 1.20928 0.98133 1.01704 0.93843 1.20904 0.97500 1.01846 0.95325 1.21015 0.93867 1.00738 0.99151 1.20921 0.98711 0.97398 0.93121 1.22277 0.87079 1.03422 0.91684 1.21414 0.92352 0.94254 0.99164 1.21082 0.84097 0.96409 0.91962 1.87016 1.29126 1.57309 1.56828 1.23052 1.05646 0.95555 0.98506 1.22928 0.94432 1.04459 1.00488 0.94059 0.99026 0.96987 0.90911 0.97433 0.87165 0.87234 0.87360 0.87208 0.86160 0.83212 1.00402 0.93465 0.98138 0.81413 0.89565 0.89962 0.89794 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.68 7.34 55.43 0.41 -21.27 16 2 C 0.09 2.26 5.41 -17.82 -0.10 2.16 16 3 Si 0.88 20.94 29.58 -169.99 -5.03 15.91 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.49 -13.57 9.37 -34.44 -0.32 -13.89 16 8 H 0.05 1.39 7.89 -52.48 -0.41 0.98 16 9 C 0.18 4.66 5.17 -4.97 -0.03 4.64 16 10 N -0.47 -10.71 2.63 -237.51 -0.63 -11.34 16 11 C 0.07 1.53 4.79 -4.97 -0.02 1.51 16 12 C -0.04 -0.78 5.05 -104.62 -0.53 -1.31 16 13 C -0.12 -2.16 8.57 -39.58 -0.34 -2.50 16 14 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 15 C -0.14 -2.22 10.05 -39.58 -0.40 -2.62 16 16 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 17 C -0.08 -1.56 9.73 -39.59 -0.39 -1.95 16 18 C 0.08 1.84 3.82 -3.83 -0.01 1.83 16 19 C -0.07 -1.36 1.99 -154.51 -0.31 -1.66 16 20 C 0.14 2.74 6.19 37.16 0.23 2.97 16 21 O -0.50 -10.53 11.86 -35.23 -0.42 -10.94 16 22 C -0.19 -3.17 8.45 -26.69 -0.23 -3.40 16 23 C -0.19 -2.98 9.94 -26.69 -0.27 -3.24 16 24 H 0.25 6.22 8.31 -40.82 -0.34 5.88 16 25 H -0.01 -0.22 7.60 -51.93 -0.39 -0.61 16 26 H 0.01 0.29 5.69 -51.93 -0.30 -0.01 16 27 H 0.07 1.42 4.32 -51.93 -0.22 1.19 16 28 H 0.01 0.16 7.91 -51.93 -0.41 -0.25 16 29 H 0.11 1.99 7.51 -52.49 -0.39 1.59 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 34 H 0.15 3.76 4.69 -51.93 -0.24 3.52 16 35 H -0.02 -0.48 7.95 -51.93 -0.41 -0.90 16 36 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 37 H 0.00 0.01 8.09 -51.93 -0.42 -0.41 16 38 H 0.34 6.12 9.12 45.56 0.42 6.54 16 39 H 0.09 1.44 6.61 -51.93 -0.34 1.09 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -27.87 331.15 -9.79 -37.66 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.62 Total: 7.59 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -3.50 Total: -22.60 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: -0.22 Total: -32.61 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.42 Total: -10.94 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.87 -9.79 -37.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341916772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.817 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds