Wall clock time and date at job start Mon Mar 30 2020 01:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00157 * 2 1 4 4 H 1.48500 * 109.46905 * 246.26145 * 3 2 1 5 5 H 1.48501 * 109.46828 * 6.26069 * 3 2 1 6 6 H 1.48495 * 109.47099 * 126.26135 * 3 2 1 7 7 C 1.37877 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99599 * 198.98971 * 7 2 1 9 9 C 1.50693 * 120.00466 * 18.71613 * 7 2 1 10 10 N 1.46908 * 109.46842 * 295.19674 * 9 7 2 11 11 C 1.46902 * 110.99708 * 225.80819 * 10 9 7 12 12 C 1.50702 * 109.46985 * 73.20138 * 11 10 9 13 13 C 1.38239 * 119.99992 * 262.43244 * 12 11 10 14 14 C 1.38232 * 119.99942 * 179.77036 * 13 12 11 15 15 C 1.38237 * 119.99826 * 0.50051 * 14 13 12 16 16 C 1.38230 * 119.99885 * 359.75472 * 15 14 13 17 17 C 1.38226 * 120.00152 * 82.70626 * 12 11 10 18 18 C 1.46898 * 111.00213 * 101.85693 * 10 9 7 19 19 C 1.52999 * 109.47327 * 199.15862 * 18 10 9 20 20 C 1.53002 * 115.54848 * 66.27632 * 19 18 10 21 21 O 1.42905 * 109.47252 * 304.95897 * 20 19 18 22 22 C 1.52998 * 117.49583 * 280.61408 * 19 18 10 23 23 C 1.52998 * 117.50018 * 211.95049 * 19 18 10 24 24 H 0.97000 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47055 * 55.18812 * 9 7 2 26 26 H 1.08992 * 109.47461 * 175.19122 * 9 7 2 27 27 H 1.08996 * 109.47331 * 193.20375 * 11 10 9 28 28 H 1.09004 * 109.46918 * 313.20487 * 11 10 9 29 29 H 1.08001 * 119.99796 * 359.97438 * 13 12 11 30 30 H 1.07999 * 120.00164 * 180.23475 * 14 13 12 31 31 H 1.08000 * 119.99929 * 179.72663 * 15 14 13 32 32 H 1.08000 * 119.99917 * 179.97438 * 16 15 14 33 33 H 1.08006 * 119.99987 * 0.02562 * 17 12 11 34 34 H 1.09006 * 109.46773 * 319.15983 * 18 10 9 35 35 H 1.08996 * 109.47306 * 79.15419 * 18 10 9 36 36 H 1.08997 * 109.47166 * 64.96181 * 20 19 18 37 37 H 1.08996 * 109.47157 * 184.95969 * 20 19 18 38 38 H 0.96695 * 114.00027 * 185.00360 * 21 20 19 39 39 H 1.08995 * 117.50430 * 359.97438 * 22 19 18 40 40 H 1.09001 * 117.49565 * 145.02145 * 22 19 18 41 41 H 1.08997 * 117.49700 * 214.97521 * 23 19 18 42 42 H 1.08996 * 117.49781 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.9848 1.7645 -1.2816 5 1 1.2914 2.7423 0.1527 6 1 3.2138 1.6323 1.1289 7 6 2.0045 -1.1941 -0.0005 8 1 3.0405 -1.2196 0.3038 9 6 1.3108 -2.4645 -0.4198 10 7 0.2400 -2.7762 0.5364 11 6 0.2697 -4.1950 0.9159 12 6 1.4398 -4.4454 1.8321 13 6 2.6216 -4.9495 1.3220 14 6 3.6964 -5.1747 2.1616 15 6 3.5860 -4.9056 3.5131 16 6 2.4025 -4.4065 4.0239 17 6 1.3294 -4.1764 3.1835 18 6 -1.0739 -2.4035 -0.0047 19 6 -2.0820 -2.2851 1.1402 20 6 -1.8266 -1.1460 2.1291 21 8 -0.5011 -1.2568 2.6515 22 6 -2.6774 -3.5812 1.6938 23 6 -3.5380 -2.6467 0.8396 24 1 -0.4850 0.8401 0.0004 25 1 0.8834 -2.3339 -1.4141 26 1 2.0308 -3.2825 -0.4385 27 1 -0.6561 -4.4531 1.4300 28 1 0.3715 -4.8085 0.0207 29 1 2.7062 -5.1642 0.2670 30 1 4.6209 -5.5650 1.7625 31 1 4.4242 -5.0857 4.1698 32 1 2.3161 -4.1967 5.0798 33 1 0.4045 -3.7871 3.5828 34 1 -0.9961 -1.4465 -0.5207 35 1 -1.4084 -3.1681 -0.7057 36 1 -1.9370 -0.1896 1.6181 37 1 -2.5454 -1.2063 2.9463 38 1 -0.2955 -0.6123 3.3424 39 1 -2.3514 -4.5181 1.2423 40 1 -2.8877 -3.6220 2.7626 41 1 -4.3139 -2.0733 1.3468 42 1 -3.7777 -2.9685 -0.1738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341916772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:30 Heat of formation + Delta-G solvation = 18.053631 kcal Electronic energy + Delta-G solvation = -22746.246043 eV Core-core repulsion = 19692.555138 eV Total energy + Delta-G solvation = -3053.690904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28177 -39.30762 -36.95966 -35.97961 -34.25536 -32.04628 -31.58477 -29.49944 -27.91040 -26.67325 -25.17263 -23.48658 -23.14463 -22.75143 -21.40641 -19.67910 -18.14887 -17.58083 -17.44688 -16.74423 -16.18864 -16.05815 -15.92165 -15.45552 -15.13669 -14.88070 -14.49168 -14.09429 -14.02436 -13.72706 -13.53738 -13.09654 -13.02845 -12.80295 -12.72607 -12.53882 -12.37711 -12.14088 -11.85643 -11.67271 -11.56639 -11.28237 -11.16512 -10.75289 -10.50937 -10.11325 -10.00858 -9.58727 -9.35607 -8.17052 -7.67135 -5.89537 0.68701 0.74084 1.48476 1.50199 1.56727 2.58098 2.92345 3.10514 3.35310 3.81003 3.95379 4.08820 4.15063 4.19533 4.31120 4.36913 4.39885 4.46294 4.60584 4.71052 4.78425 4.80548 4.85104 4.92184 4.97161 5.03610 5.05073 5.11381 5.28155 5.32785 5.35429 5.38684 5.47295 5.52353 5.75531 5.77517 5.79197 6.03029 6.23310 6.35337 6.55470 6.80124 7.13935 7.33660 7.49059 7.74828 9.15826 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.009428 C = 0.006537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.721897 B = 2969.196075 C = 4282.527024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.057 3.943 3 Si 0.934 3.066 4 H -0.286 1.286 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.527 4.527 8 H 0.029 0.971 9 C 0.192 3.808 10 N -0.468 5.468 11 C 0.079 3.921 12 C -0.064 4.064 13 C -0.135 4.135 14 C -0.132 4.132 15 C -0.135 4.135 16 C -0.131 4.131 17 C -0.097 4.097 18 C 0.086 3.914 19 C -0.101 4.101 20 C 0.149 3.851 21 O -0.527 6.527 22 C -0.178 4.178 23 C -0.164 4.164 24 H 0.250 0.750 25 H -0.034 1.034 26 H 0.010 0.990 27 H 0.083 0.917 28 H 0.000 1.000 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.116 0.884 34 H 0.122 0.878 35 H -0.030 1.030 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.354 0.646 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 -6.456 6.674 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.146 4.146 3 Si 0.762 3.238 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.566 4.566 8 H 0.047 0.953 9 C 0.067 3.933 10 N -0.191 5.191 11 C -0.048 4.048 12 C -0.065 4.065 13 C -0.154 4.154 14 C -0.149 4.149 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.115 4.115 18 C -0.042 4.042 19 C -0.101 4.101 20 C 0.070 3.930 21 O -0.328 6.328 22 C -0.215 4.215 23 C -0.202 4.202 24 H 0.060 0.940 25 H -0.016 1.016 26 H 0.029 0.971 27 H 0.101 0.899 28 H 0.018 0.982 29 H 0.124 0.876 30 H 0.153 0.847 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.139 0.861 35 H -0.012 1.012 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.197 0.803 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.489 -6.550 6.621 9.946 hybrid contribution 0.307 0.921 -0.727 1.213 sum -3.182 -5.629 5.895 8.750 Atomic orbital electron populations 1.69876 1.05576 1.24559 1.47668 1.25253 0.95296 1.00008 0.94035 0.86063 0.78850 0.81338 0.77570 1.21196 1.20990 1.21279 1.20908 0.95536 0.93026 1.47107 0.95319 1.19721 0.89905 0.94618 0.89077 1.62269 1.02177 1.12158 1.42456 1.21373 0.96644 0.91568 0.95235 1.19899 0.95342 0.96441 0.94784 1.21136 0.93935 1.01103 0.99213 1.21276 0.98395 1.01030 0.94244 1.21337 0.98245 1.00262 0.95427 1.21363 0.93373 0.99767 1.00353 1.20982 0.99474 0.98085 0.92975 1.22091 0.87719 1.01458 0.92887 1.21291 0.93621 0.96214 0.98991 1.21048 0.83970 0.95435 0.92504 1.86986 1.30418 1.57946 1.57428 1.23042 1.04619 0.94315 0.99476 1.23021 0.92972 1.03258 1.00918 0.93974 1.01617 0.97149 0.89906 0.98155 0.87626 0.84700 0.83914 0.84441 0.86625 0.86072 1.01190 0.95417 0.95365 0.80254 0.89868 0.88452 0.87483 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.47 7.34 21.45 0.16 -43.32 16 2 C 0.06 3.07 5.41 84.65 0.46 3.53 16 3 Si 0.93 43.39 29.58 68.60 2.03 45.42 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.53 -29.83 9.37 25.60 0.24 -29.59 16 8 H 0.03 1.69 7.89 -2.91 -0.02 1.67 16 9 C 0.19 10.18 5.17 85.55 0.44 10.62 16 10 N -0.47 -21.99 2.63 -905.35 -2.39 -24.38 16 11 C 0.08 3.32 4.79 85.56 0.41 3.73 16 12 C -0.06 -2.56 5.05 -19.87 -0.10 -2.66 16 13 C -0.14 -5.10 8.57 22.27 0.19 -4.91 16 14 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 15 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 16 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 17 C -0.10 -3.57 9.73 22.27 0.22 -3.35 16 18 C 0.09 3.91 3.82 86.30 0.33 4.24 16 19 C -0.10 -3.74 1.99 -52.18 -0.10 -3.84 16 20 C 0.15 5.52 6.19 71.98 0.45 5.96 16 21 O -0.53 -21.79 11.86 -148.98 -1.77 -23.55 16 22 C -0.18 -5.55 8.45 30.62 0.26 -5.29 16 23 C -0.16 -4.88 9.94 30.62 0.30 -4.58 16 24 H 0.25 12.51 8.31 -92.71 -0.77 11.74 16 25 H -0.03 -1.92 7.60 -2.38 -0.02 -1.94 16 26 H 0.01 0.52 5.69 -2.39 -0.01 0.51 16 27 H 0.08 3.23 4.32 -2.39 -0.01 3.22 16 28 H 0.00 0.02 7.91 -2.39 -0.02 0.00 16 29 H 0.11 3.94 7.51 -2.91 -0.02 3.92 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 34 H 0.12 6.26 4.69 -2.38 -0.01 6.25 16 35 H -0.03 -1.35 7.95 -2.39 -0.02 -1.37 16 36 H 0.03 1.12 7.44 -2.39 -0.02 1.10 16 37 H 0.03 0.89 8.09 -2.39 -0.02 0.87 16 38 H 0.35 12.42 9.12 -74.06 -0.68 11.74 16 39 H 0.08 2.65 6.61 -2.39 -0.02 2.64 16 40 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -60.40 331.15 2.13 -58.26 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.33 Total: 25.36 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.76 Total: -37.79 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -2.23 Total: -67.70 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.77 Total: -23.55 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -60.40 2.13 -58.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341916772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.317 kcal (2) G-P(sol) polarization free energy of solvation -60.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds