Wall clock time and date at job start Mon Mar 30 2020 01:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 120.00309 * 2 1 4 4 C 1.38209 * 119.99857 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00391 * 0.02562 * 4 3 2 6 6 C 1.38210 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99506 * 179.72924 * 2 1 3 8 8 C 1.50703 * 120.00336 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47019 * 56.44518 * 8 7 2 10 10 C 1.52997 * 109.47247 * 176.44490 * 8 7 2 11 11 C 1.50696 * 109.46912 * 296.44255 * 8 7 2 12 12 O 1.21284 * 120.00357 * 353.12152 * 11 8 7 13 13 N 1.34781 * 120.00129 * 173.11852 * 11 8 7 14 14 C 1.46490 * 120.00392 * 180.02562 * 13 11 8 15 15 C 1.53004 * 109.47474 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47413 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99864 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00042 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00229 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99987 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47231 * 90.00663 * 20 18 16 22 22 H 1.48497 * 109.47716 * 210.00541 * 20 18 16 23 23 H 1.48505 * 109.47560 * 330.00872 * 20 18 16 24 24 H 1.09001 * 109.46952 * 94.80762 * 1 2 3 25 25 H 1.09006 * 109.46687 * 334.81552 * 1 2 3 26 26 H 1.08992 * 109.47476 * 214.80828 * 1 2 3 27 27 H 1.08000 * 120.00090 * 0.02562 * 3 2 1 28 28 H 1.08009 * 119.99724 * 180.02562 * 4 3 2 29 29 H 1.08000 * 120.00396 * 179.97438 * 5 4 3 30 30 H 1.08007 * 120.00179 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.47329 * 51.04908 * 9 8 7 32 32 H 1.08997 * 109.47306 * 171.05553 * 9 8 7 33 33 H 1.09008 * 109.47177 * 291.05288 * 9 8 7 34 34 H 1.09002 * 109.47185 * 60.00075 * 10 8 7 35 35 H 1.08998 * 109.47117 * 180.02562 * 10 8 7 36 36 H 1.09001 * 109.47368 * 300.00099 * 10 8 7 37 37 H 0.96998 * 119.99563 * 0.02562 * 13 11 8 38 38 H 1.09002 * 109.47513 * 300.00011 * 14 13 11 39 39 H 1.09001 * 109.47318 * 60.00340 * 14 13 11 40 40 H 1.09002 * 109.46596 * 300.00373 * 15 14 13 41 41 H 1.09001 * 109.46733 * 59.99782 * 15 14 13 42 42 H 0.96998 * 120.00742 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0057 8 6 1.4444 -2.5021 0.0124 9 6 0.4985 -2.5510 -1.1891 10 6 2.4362 -3.6641 -0.0717 11 6 0.6459 -2.6144 1.2854 12 8 0.7797 -1.7853 2.1605 13 7 -0.2172 -3.6362 1.4517 14 6 -0.9939 -3.7451 2.6889 15 6 -1.8889 -4.9843 2.6219 16 6 -2.6884 -5.0960 3.8944 17 1 -2.5697 -4.3573 4.6733 18 6 -3.5706 -6.1418 4.0648 19 7 -4.2687 -6.2390 5.1751 20 14 -3.7754 -7.4198 2.7179 21 1 -2.8089 -8.5263 2.9344 22 1 -5.1591 -7.9576 2.7519 23 1 -3.5207 -6.7917 1.3966 24 1 -0.3633 -0.0861 -1.0241 25 1 -0.3633 0.9301 0.4373 26 1 -0.3634 -0.8437 0.5866 27 1 1.6584 2.1326 0.0004 28 1 4.1205 2.1325 0.0010 29 1 5.3517 -0.0002 0.0005 30 1 4.1206 -2.1325 0.0001 31 1 1.0518 -2.3117 -2.0972 32 1 0.0726 -3.5506 -1.2758 33 1 -0.3031 -1.8254 -1.0503 34 1 3.1101 -3.6292 0.7843 35 1 1.8911 -4.6080 -0.0672 36 1 3.0139 -3.5829 -0.9924 37 1 -0.3240 -4.2994 0.7520 38 1 -0.3154 -3.8330 3.5374 39 1 -1.6126 -2.8558 2.8090 40 1 -2.5675 -4.8968 1.7733 41 1 -1.2699 -5.8734 2.5020 42 1 -4.8896 -6.9745 5.2949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342672047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:46 Heat of formation + Delta-G solvation = -24.352336 kcal Electronic energy + Delta-G solvation = -21456.230781 eV Core-core repulsion = 18400.701016 eV Total energy + Delta-G solvation = -3055.529765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83839 -38.61983 -35.32639 -34.98170 -32.91615 -32.69766 -30.42976 -29.47215 -27.86391 -26.58298 -25.23482 -23.74621 -21.68701 -21.31539 -20.75982 -19.21742 -17.05885 -16.90716 -16.31569 -15.62951 -15.41487 -14.81538 -14.61896 -14.23834 -14.15717 -13.85600 -13.65474 -13.44494 -13.05136 -12.63439 -12.44316 -12.34554 -12.18615 -12.09906 -11.92852 -11.85640 -11.49361 -11.30514 -11.17999 -10.87768 -10.58237 -10.38996 -10.23355 -9.97254 -9.43879 -9.26047 -8.78409 -8.65006 -8.53918 -8.50941 -6.12124 -4.12340 1.35230 1.41547 2.93452 3.23944 3.31579 3.32723 3.50445 3.87853 4.36440 4.40079 4.66584 4.82826 4.93767 4.96214 5.03050 5.06486 5.20724 5.30508 5.39420 5.50211 5.55961 5.58262 5.64689 5.69897 5.73315 5.88758 5.92041 6.00550 6.05402 6.14049 6.19530 6.25746 6.47598 6.49796 6.54938 6.69137 6.76598 7.01612 7.13032 7.21887 7.65593 7.90554 8.42567 8.57967 8.92318 9.47904 11.00969 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032981 B = 0.003826 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.779682 B = 7316.179628 C = 7555.870235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.054 4.054 3 C -0.123 4.123 4 C -0.121 4.121 5 C -0.130 4.130 6 C -0.113 4.113 7 C -0.055 4.055 8 C -0.044 4.044 9 C -0.154 4.154 10 C -0.142 4.142 11 C 0.517 3.483 12 O -0.534 6.534 13 N -0.725 5.725 14 C 0.130 3.870 15 C -0.021 4.021 16 C -0.523 4.523 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.022 0.978 41 H 0.017 0.983 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.502 9.460 -16.461 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.139 4.139 5 C -0.148 4.148 6 C -0.131 4.131 7 C -0.056 4.056 8 C -0.048 4.048 9 C -0.211 4.211 10 C -0.199 4.199 11 C 0.302 3.698 12 O -0.411 6.411 13 N -0.375 5.375 14 C 0.008 3.992 15 C -0.059 4.059 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.035 0.965 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.430 9.940 -15.699 23.526 hybrid contribution -0.207 -1.075 -0.794 1.353 sum 14.223 8.865 -16.493 23.514 Atomic orbital electron populations 1.21165 0.91592 1.03798 1.01647 1.19638 0.95953 0.92414 0.97413 1.20983 0.94250 0.97308 1.01547 1.21075 0.94289 0.97897 1.00605 1.21031 0.99536 0.92520 1.01736 1.21100 0.93444 0.98343 1.00204 1.19181 0.93190 0.92798 1.00404 1.19731 0.95856 0.94451 0.94713 1.22198 0.99406 1.03261 0.96269 1.21932 0.98812 0.96429 1.02770 1.20218 0.79955 0.81489 0.88110 1.90721 1.66023 1.40773 1.43587 1.46335 1.42284 1.27588 1.21303 1.21503 0.93369 1.00195 0.84135 1.19788 0.94809 0.92568 0.98754 1.20920 1.22288 1.11673 1.01243 0.90650 1.25002 0.95158 0.97634 0.95488 1.69901 1.26219 1.31955 1.25596 0.86754 0.77506 0.81930 0.82888 1.20228 1.21266 1.19074 0.91207 0.91800 0.90265 0.86291 0.86419 0.86360 0.85749 0.91441 0.91625 0.90517 0.91633 0.91534 0.91173 0.77153 0.92032 0.91989 0.96018 0.96479 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 7.79 36.01 0.28 -1.32 16 2 C -0.05 -0.72 5.24 -104.62 -0.55 -1.27 16 3 C -0.12 -1.47 9.68 -39.59 -0.38 -1.85 16 4 C -0.12 -1.32 10.05 -39.59 -0.40 -1.71 16 5 C -0.13 -1.41 10.05 -39.59 -0.40 -1.81 16 6 C -0.11 -1.33 8.98 -39.58 -0.36 -1.69 16 7 C -0.06 -0.73 4.25 -104.62 -0.44 -1.17 16 8 C -0.04 -0.54 0.63 -156.82 -0.10 -0.64 16 9 C -0.15 -1.56 7.73 37.16 0.29 -1.27 16 10 C -0.14 -1.44 7.10 37.16 0.26 -1.17 16 11 C 0.52 8.37 4.59 -10.99 -0.05 8.32 16 12 O -0.53 -10.75 14.49 5.55 0.08 -10.67 16 13 N -0.72 -11.75 5.40 -60.30 -0.33 -12.07 16 14 C 0.13 2.64 5.61 -4.05 -0.02 2.61 16 15 C -0.02 -0.49 4.15 -27.88 -0.12 -0.60 16 16 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 17 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 20 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 24 H 0.07 0.73 6.94 -51.93 -0.36 0.37 16 25 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 26 H 0.08 1.19 4.08 -51.93 -0.21 0.97 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.12 1.23 5.90 -52.48 -0.31 0.92 16 31 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 33 H 0.08 0.81 4.45 -51.92 -0.23 0.58 16 34 H 0.06 0.71 7.36 -51.93 -0.38 0.32 16 35 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 37 H 0.39 5.37 7.62 -40.82 -0.31 5.06 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 41 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -32.62 330.33 -7.89 -40.52 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.32 Total: 4.16 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -2.41 Total: -16.62 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.45 Total: -38.59 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.62 -7.89 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342672047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.166 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds