Wall clock time and date at job start Mon Mar 30 2020 01:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38254 * 120.00309 * 2 1 4 4 C 1.38209 * 119.99857 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00391 * 0.02562 * 4 3 2 6 6 C 1.38210 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99506 * 179.72924 * 2 1 3 8 8 C 1.50703 * 120.00336 * 359.97438 * 7 2 1 9 9 C 1.52997 * 109.47019 * 56.44518 * 8 7 2 10 10 C 1.52997 * 109.47247 * 176.44490 * 8 7 2 11 11 C 1.50696 * 109.46912 * 296.44255 * 8 7 2 12 12 O 1.21284 * 120.00357 * 353.12152 * 11 8 7 13 13 N 1.34781 * 120.00129 * 173.11852 * 11 8 7 14 14 C 1.46490 * 120.00392 * 180.02562 * 13 11 8 15 15 C 1.53004 * 109.47474 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47413 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99864 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00042 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00229 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99987 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47231 * 90.00663 * 20 18 16 22 22 H 1.48497 * 109.47716 * 210.00541 * 20 18 16 23 23 H 1.48505 * 109.47560 * 330.00872 * 20 18 16 24 24 H 1.09001 * 109.46952 * 94.80762 * 1 2 3 25 25 H 1.09006 * 109.46687 * 334.81552 * 1 2 3 26 26 H 1.08992 * 109.47476 * 214.80828 * 1 2 3 27 27 H 1.08000 * 120.00090 * 0.02562 * 3 2 1 28 28 H 1.08009 * 119.99724 * 180.02562 * 4 3 2 29 29 H 1.08000 * 120.00396 * 179.97438 * 5 4 3 30 30 H 1.08007 * 120.00179 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.47329 * 51.04908 * 9 8 7 32 32 H 1.08997 * 109.47306 * 171.05553 * 9 8 7 33 33 H 1.09008 * 109.47177 * 291.05288 * 9 8 7 34 34 H 1.09002 * 109.47185 * 60.00075 * 10 8 7 35 35 H 1.08998 * 109.47117 * 180.02562 * 10 8 7 36 36 H 1.09001 * 109.47368 * 300.00099 * 10 8 7 37 37 H 0.96998 * 119.99563 * 0.02562 * 13 11 8 38 38 H 1.09002 * 109.47513 * 300.00011 * 14 13 11 39 39 H 1.09001 * 109.47318 * 60.00340 * 14 13 11 40 40 H 1.09002 * 109.46596 * 300.00373 * 15 14 13 41 41 H 1.09001 * 109.46733 * 59.99782 * 15 14 13 42 42 H 0.96998 * 120.00742 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 0.0005 7 6 2.1980 -1.1970 0.0057 8 6 1.4444 -2.5021 0.0124 9 6 0.4985 -2.5510 -1.1891 10 6 2.4362 -3.6641 -0.0717 11 6 0.6459 -2.6144 1.2854 12 8 0.7797 -1.7853 2.1605 13 7 -0.2172 -3.6362 1.4517 14 6 -0.9939 -3.7451 2.6889 15 6 -1.8889 -4.9843 2.6219 16 6 -2.6884 -5.0960 3.8944 17 1 -2.5697 -4.3573 4.6733 18 6 -3.5706 -6.1418 4.0648 19 7 -4.2687 -6.2390 5.1751 20 14 -3.7754 -7.4198 2.7179 21 1 -2.8089 -8.5263 2.9344 22 1 -5.1591 -7.9576 2.7519 23 1 -3.5207 -6.7917 1.3966 24 1 -0.3633 -0.0861 -1.0241 25 1 -0.3633 0.9301 0.4373 26 1 -0.3634 -0.8437 0.5866 27 1 1.6584 2.1326 0.0004 28 1 4.1205 2.1325 0.0010 29 1 5.3517 -0.0002 0.0005 30 1 4.1206 -2.1325 0.0001 31 1 1.0518 -2.3117 -2.0972 32 1 0.0726 -3.5506 -1.2758 33 1 -0.3031 -1.8254 -1.0503 34 1 3.1101 -3.6292 0.7843 35 1 1.8911 -4.6080 -0.0672 36 1 3.0139 -3.5829 -0.9924 37 1 -0.3240 -4.2994 0.7520 38 1 -0.3154 -3.8330 3.5374 39 1 -1.6126 -2.8558 2.8090 40 1 -2.5675 -4.8968 1.7733 41 1 -1.2699 -5.8734 2.5020 42 1 -4.8896 -6.9745 5.2949 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342672047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:46 Heat of formation + Delta-G solvation = -44.878569 kcal Electronic energy + Delta-G solvation = -21457.120865 eV Core-core repulsion = 18400.701016 eV Total energy + Delta-G solvation = -3056.419849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.90512 -39.72558 -36.66310 -36.26978 -34.76103 -33.72977 -32.05833 -30.55634 -28.67314 -27.44909 -27.00331 -24.81650 -23.00268 -22.46624 -22.13120 -20.40756 -18.98030 -18.12280 -17.36745 -16.81954 -16.59226 -16.22877 -16.02480 -15.57954 -15.13734 -15.09806 -15.00304 -14.61070 -14.44100 -13.88923 -13.44304 -13.35503 -13.32078 -13.04019 -13.02964 -12.97454 -12.80120 -12.66181 -12.22490 -12.15487 -12.08946 -11.76382 -11.70870 -11.51823 -11.41863 -10.79096 -10.65563 -10.02699 -9.66932 -9.42162 -8.30323 -6.37932 0.46692 0.54112 1.39155 1.42007 1.53272 1.67510 2.27094 2.36889 2.93041 3.04785 3.49120 3.76890 3.92697 4.06854 4.09314 4.11312 4.27662 4.36409 4.41692 4.42512 4.63192 4.67399 4.74069 4.74711 4.79693 4.84265 4.87749 4.91488 4.96610 5.12949 5.15535 5.23244 5.27732 5.35449 5.39919 5.43963 5.61695 5.64849 5.65717 5.79690 6.17392 6.21753 6.62157 6.71236 7.26559 7.31087 8.86633 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032981 B = 0.003826 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.779682 B = 7316.179628 C = 7555.870235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.125 4.125 5 C -0.135 4.135 6 C -0.123 4.123 7 C -0.077 4.077 8 C -0.036 4.036 9 C -0.153 4.153 10 C -0.142 4.142 11 C 0.517 3.483 12 O -0.579 6.579 13 N -0.714 5.714 14 C 0.146 3.854 15 C -0.011 4.011 16 C -0.540 4.540 17 H 0.026 0.974 18 C 0.004 3.996 19 N -0.952 5.952 20 Si 0.960 3.040 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.235 1.235 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.131 0.869 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.412 0.588 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.087 8.432 -19.891 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.078 4.078 3 C -0.156 4.156 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.140 4.140 7 C -0.077 4.077 8 C -0.039 4.039 9 C -0.210 4.210 10 C -0.199 4.199 11 C 0.305 3.695 12 O -0.459 6.459 13 N -0.366 5.366 14 C 0.022 3.978 15 C -0.049 4.049 16 C -0.579 4.579 17 H 0.044 0.956 18 C -0.193 4.193 19 N -0.592 5.592 20 Si 0.782 3.218 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.158 1.158 24 H 0.108 0.892 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.148 0.852 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.249 0.751 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.037 8.915 -19.167 26.534 hybrid contribution -0.662 -0.623 0.384 0.987 sum 15.375 8.292 -18.783 25.651 Atomic orbital electron populations 1.21117 0.91850 1.02472 1.02372 1.19848 0.96140 0.93284 0.98483 1.21251 0.95128 0.97492 1.01726 1.21431 0.94034 0.99192 0.99619 1.21413 1.00973 0.92179 1.00715 1.21405 0.93146 0.99615 0.99868 1.19405 0.94007 0.92976 1.01311 1.19730 0.96048 0.95260 0.92834 1.22225 0.98918 1.04067 0.95797 1.21986 0.98443 0.95788 1.03672 1.21020 0.79309 0.80163 0.89029 1.90698 1.67305 1.42285 1.45619 1.46071 1.41888 1.28425 1.20236 1.20991 0.92774 0.98493 0.85509 1.19639 0.94855 0.94039 0.96355 1.21258 1.23443 1.10734 1.02421 0.95552 1.26101 0.94457 1.00345 0.98443 1.70078 1.27382 1.33262 1.28432 0.85530 0.77552 0.78523 0.80226 1.18951 1.21283 1.15752 0.89175 0.92059 0.92805 0.85153 0.84002 0.83803 0.84019 0.89654 0.89970 0.91406 0.92643 0.90397 0.88573 0.75147 0.94213 0.94040 0.94373 0.94604 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 7.79 71.24 0.55 -2.54 16 2 C -0.08 -2.02 5.24 -19.87 -0.10 -2.12 16 3 C -0.14 -3.18 9.68 22.27 0.22 -2.97 16 4 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 5 C -0.14 -2.62 10.05 22.27 0.22 -2.40 16 6 C -0.12 -2.65 8.98 22.27 0.20 -2.45 16 7 C -0.08 -1.91 4.25 -19.86 -0.08 -1.99 16 8 C -0.04 -0.81 0.63 -53.68 -0.03 -0.84 16 9 C -0.15 -2.68 7.73 71.98 0.56 -2.12 16 10 C -0.14 -2.45 7.10 71.98 0.51 -1.94 16 11 C 0.52 16.54 4.59 87.65 0.40 16.94 16 12 O -0.58 -23.98 14.49 -3.04 -0.04 -24.03 16 13 N -0.71 -22.43 5.40 -463.07 -2.50 -24.93 16 14 C 0.15 6.03 5.61 86.38 0.48 6.51 16 15 C -0.01 -0.49 4.15 29.85 0.12 -0.37 16 16 C -0.54 -30.96 9.66 25.60 0.25 -30.72 16 17 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 18 C 0.00 0.20 5.47 84.65 0.46 0.67 16 19 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 20 Si 0.96 41.99 27.47 68.60 1.88 43.87 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.23 -9.03 6.54 99.48 0.65 -8.37 16 24 H 0.09 1.81 6.94 -2.39 -0.02 1.79 16 25 H 0.06 1.51 8.05 -2.38 -0.02 1.49 16 26 H 0.05 1.64 4.08 -2.39 -0.01 1.63 16 27 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 28 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 29 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.14 2.43 5.90 -2.91 -0.02 2.41 16 31 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 32 H 0.08 1.14 7.51 -2.39 -0.02 1.13 16 33 H 0.07 1.31 4.45 -2.38 -0.01 1.30 16 34 H 0.05 1.07 7.36 -2.39 -0.02 1.06 16 35 H 0.08 1.16 8.07 -2.39 -0.02 1.15 16 36 H 0.10 1.18 7.67 -2.39 -0.02 1.16 16 37 H 0.41 10.06 7.62 -92.71 -0.71 9.36 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 41 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 42 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -74.11 330.33 3.88 -70.23 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.25 Total: 22.66 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 3.98 Total: -28.60 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.20 Total: -84.14 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.04 Total: -24.03 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal Total: -74.11 3.88 -70.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342672047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.352 kcal (2) G-P(sol) polarization free energy of solvation -74.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds