Wall clock time and date at job start Mon Mar 30 2020 01:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 119.99943 * 2 1 4 4 H 1.48494 * 109.47147 * 239.99735 * 3 2 1 5 5 H 1.48500 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47200 * 119.99974 * 3 2 1 7 7 C 1.39952 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00143 * 195.15662 * 7 2 1 9 9 C 1.41393 * 119.99593 * 15.15354 * 7 2 1 10 10 C 1.40717 * 120.24414 * 207.32820 * 9 7 2 11 11 C 1.37619 * 119.74395 * 179.97438 * 10 9 7 12 12 C 1.38630 * 120.24776 * 359.97438 * 11 10 9 13 13 C 1.50708 * 119.74697 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.47003 * 90.00031 * 13 12 11 15 15 C 1.46848 * 110.99784 * 296.28088 * 14 13 12 16 16 C 1.53046 * 109.51876 * 174.16003 * 15 14 13 17 17 C 1.53118 * 109.27724 * 59.18524 * 16 15 14 18 18 C 1.53126 * 109.15793 * 302.34051 * 17 16 15 19 19 C 1.46844 * 110.99915 * 172.07160 * 14 13 12 20 20 H 1.09006 * 109.45945 * 65.83467 * 19 14 13 21 21 C 1.52999 * 109.46621 * 305.85668 * 19 14 13 22 22 O 1.42904 * 109.46877 * 296.77772 * 21 19 14 23 23 C 1.38628 * 120.50356 * 0.27731 * 12 11 10 24 24 C 1.37615 * 120.24892 * 359.44756 * 23 12 11 25 25 H 0.96999 * 119.99856 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.12745 * 359.95247 * 10 9 7 27 27 H 1.07997 * 119.87351 * 180.02562 * 11 10 9 28 28 H 1.09000 * 109.47233 * 209.99832 * 13 12 11 29 29 H 1.08998 * 109.47023 * 330.00113 * 13 12 11 30 30 H 1.08994 * 109.46612 * 294.17717 * 15 14 13 31 31 H 1.09002 * 109.46143 * 54.14714 * 15 14 13 32 32 H 1.09001 * 109.50202 * 299.23810 * 16 15 14 33 33 H 1.09003 * 109.53148 * 179.14043 * 16 15 14 34 34 H 1.08998 * 109.52174 * 182.43723 * 17 16 15 35 35 H 1.08993 * 109.52557 * 62.24440 * 17 16 15 36 36 H 1.08998 * 109.50339 * 297.71739 * 18 17 16 37 37 H 1.09003 * 109.53343 * 177.61723 * 18 17 16 38 38 H 1.09000 * 109.47016 * 56.76984 * 21 19 14 39 39 H 1.08997 * 109.47606 * 176.77445 * 21 19 14 40 40 H 0.96696 * 113.99786 * 179.97438 * 22 21 19 41 41 H 1.08008 * 119.87577 * 179.70844 * 23 12 11 42 42 H 1.07999 * 120.12878 * 180.27807 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0081 -1.2120 0.0005 8 1 3.0599 -1.2281 0.2451 9 6 1.3380 -2.4153 -0.3190 10 6 1.7948 -3.6405 0.2009 11 6 1.1345 -4.8055 -0.1164 12 6 0.0230 -4.7750 -0.9444 13 6 -0.6919 -6.0575 -1.2841 14 7 -1.7429 -6.3104 -0.2894 15 6 -1.1656 -6.5192 1.0446 16 6 -2.2903 -6.6342 2.0762 17 6 -3.1996 -7.8085 1.7038 18 6 -3.7493 -7.5901 0.2914 19 6 -2.5825 -7.4472 -0.6885 20 1 -1.9865 -8.3599 -0.6788 21 6 -3.1269 -7.2088 -2.0983 22 8 -3.9687 -6.0540 -2.0948 23 6 -0.4327 -3.5743 -1.4665 24 6 0.2085 -2.3964 -1.1581 25 1 -0.4850 0.8400 0.0004 26 1 2.6604 -3.6666 0.8461 27 1 1.4830 -5.7470 0.2817 28 1 -1.1411 -5.9720 -2.2735 29 1 0.0200 -6.8828 -1.2784 30 1 -0.5763 -7.4361 1.0460 31 1 -0.5244 -5.6752 1.2990 32 1 -2.8716 -5.7122 2.0852 33 1 -1.8625 -6.8044 3.0642 34 1 -4.0266 -7.8675 2.4114 35 1 -2.6275 -8.7357 1.7326 36 1 -4.3536 -6.6831 0.2723 37 1 -4.3639 -8.4431 0.0035 38 1 -2.2966 -7.0510 -2.7865 39 1 -3.7030 -8.0774 -2.4171 40 1 -4.3496 -5.8424 -2.9580 41 1 -1.2969 -3.5628 -2.1143 42 1 -0.1509 -1.4616 -1.5623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342704027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:48 Heat of formation + Delta-G solvation = -37.129719 kcal Electronic energy + Delta-G solvation = -21640.108933 eV Core-core repulsion = 18584.025099 eV Total energy + Delta-G solvation = -3056.083834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.34669 -37.38159 -36.09748 -34.15036 -32.90495 -31.26038 -29.90819 -29.14013 -26.88563 -25.90978 -24.23225 -22.26837 -21.24010 -20.76591 -19.71395 -19.32907 -17.23000 -17.15906 -15.78392 -15.41229 -15.24506 -14.41624 -14.24940 -13.91423 -13.82377 -13.42020 -13.17220 -12.97766 -12.85606 -12.58895 -12.27865 -11.86763 -11.53112 -11.45454 -11.36215 -11.01651 -10.98028 -10.88954 -10.61133 -10.46421 -10.32497 -10.11281 -10.00196 -9.65886 -9.48191 -9.27384 -9.07795 -7.76029 -7.35873 -7.17676 -6.66629 -4.29029 2.81502 3.10180 3.12933 3.13584 3.22890 3.98551 4.26349 4.45980 4.74528 4.91417 4.99768 5.13469 5.30750 5.44062 5.49232 5.56271 5.71067 5.76559 5.78948 5.85294 5.93993 5.98260 6.11098 6.13325 6.22802 6.31033 6.43069 6.44165 6.51340 6.57109 6.66289 7.02629 7.14708 7.36103 7.41932 7.59545 7.63119 7.69784 7.82962 7.95695 8.12337 8.22219 8.37639 8.71962 8.96724 9.04953 10.28200 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026322 B = 0.004314 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.483360 B = 6488.679042 C = 6715.877515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.467 4.467 8 H 0.075 0.925 9 C 0.113 3.887 10 C -0.225 4.225 11 C -0.088 4.088 12 C -0.201 4.201 13 C 0.116 3.884 14 N -0.514 5.514 15 C 0.055 3.945 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.105 4.105 19 C 0.084 3.916 20 H 0.041 0.959 21 C 0.080 3.920 22 O -0.549 6.549 23 C -0.077 4.077 24 C -0.163 4.163 25 H 0.280 0.720 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.040 0.960 40 H 0.369 0.631 41 H 0.087 0.913 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 -12.037 -1.890 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.497 4.497 8 H 0.093 0.907 9 C 0.110 3.890 10 C -0.245 4.245 11 C -0.107 4.107 12 C -0.203 4.203 13 C -0.010 4.010 14 N -0.239 5.239 15 C -0.072 4.072 16 C -0.155 4.155 17 C -0.157 4.157 18 C -0.143 4.143 19 C -0.024 4.024 20 H 0.059 0.941 21 C 0.002 3.998 22 O -0.353 6.353 23 C -0.096 4.096 24 C -0.182 4.182 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.214 0.786 41 H 0.106 0.894 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.523 -11.470 -1.216 13.251 hybrid contribution 0.746 -0.004 -0.530 0.915 sum -5.777 -11.475 -1.747 12.965 Atomic orbital electron populations 1.69818 1.07447 1.29120 1.35781 1.25874 0.94725 1.01093 0.92435 0.86397 0.80102 0.80486 0.79850 1.18939 1.20391 1.19115 1.19531 0.97075 0.91048 1.42063 0.90697 1.17605 0.91204 0.91932 0.88235 1.20951 1.03704 0.93213 1.06619 1.20351 0.95964 0.96154 0.98228 1.18848 0.99921 0.93299 1.08192 1.20832 0.90632 0.94895 0.94602 1.61957 1.21996 1.37891 1.02041 1.22126 0.95991 1.00241 0.88862 1.21585 0.97265 0.98929 0.97672 1.21589 0.99068 0.98215 0.96871 1.21499 0.96987 1.02044 0.93797 1.21669 0.94759 0.92288 0.93707 0.94105 1.22285 0.93140 0.87661 0.96712 1.86667 1.66401 1.47080 1.35135 1.20489 0.97558 0.92484 0.99101 1.21282 0.99351 0.96512 1.01102 0.90931 0.89246 0.90027 0.91326 0.96499 0.96283 0.89064 0.90960 0.92125 0.92250 0.92894 0.90083 0.92575 0.93375 0.94173 0.78551 0.89442 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.18 10.99 55.55 0.61 -20.57 16 2 C 0.08 1.95 5.18 -17.34 -0.09 1.86 16 3 Si 0.91 19.06 29.59 -169.99 -5.03 14.03 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.47 -12.65 9.06 -37.74 -0.34 -12.99 16 8 H 0.07 1.95 7.89 -52.49 -0.41 1.53 16 9 C 0.11 3.06 5.55 -106.82 -0.59 2.47 16 10 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 11 C -0.09 -1.99 7.78 -39.66 -0.31 -2.29 16 12 C -0.20 -4.43 4.85 -104.33 -0.51 -4.94 16 13 C 0.12 2.13 4.80 -4.97 -0.02 2.10 16 14 N -0.51 -8.90 4.42 -228.11 -1.01 -9.91 16 15 C 0.06 0.93 5.10 -3.83 -0.02 0.91 16 16 C -0.12 -1.71 6.09 -26.65 -0.16 -1.87 16 17 C -0.12 -1.49 6.00 -26.61 -0.16 -1.65 16 18 C -0.11 -1.38 5.21 -26.65 -0.14 -1.52 16 19 C 0.08 1.19 2.23 -67.72 -0.15 1.04 16 20 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 21 C 0.08 1.00 6.25 37.16 0.23 1.23 16 22 O -0.55 -7.57 12.76 -35.23 -0.45 -8.02 16 23 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 24 C -0.16 -4.33 8.67 -38.87 -0.34 -4.67 16 25 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 26 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.08 1.64 7.97 -52.49 -0.42 1.23 16 28 H 0.07 1.19 5.63 -51.93 -0.29 0.90 16 29 H 0.02 0.29 8.08 -51.93 -0.42 -0.12 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 1.79 5.71 -51.93 -0.30 1.49 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.60 5.97 -51.93 -0.31 0.29 16 39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.37 3.37 9.12 45.56 0.42 3.78 16 41 H 0.09 1.97 8.06 -52.48 -0.42 1.55 16 42 H 0.11 3.16 6.27 -52.49 -0.33 2.83 16 LS Contribution 329.06 15.07 4.96 4.96 Total: -1.00 -29.25 329.06 -10.10 -39.36 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.82 Total: 8.70 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -3.36 Total: -28.55 kcal Atomic # 7 Polarization: -30.08 SS G_CDS: -0.40 Total: -30.47 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.45 Total: -8.02 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.25 -10.10 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342704027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.225 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds