Wall clock time and date at job start Mon Mar 30 2020 01:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86802 * 119.99943 * 2 1 4 4 H 1.48494 * 109.47147 * 239.99735 * 3 2 1 5 5 H 1.48500 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47200 * 119.99974 * 3 2 1 7 7 C 1.39952 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00143 * 195.15662 * 7 2 1 9 9 C 1.41393 * 119.99593 * 15.15354 * 7 2 1 10 10 C 1.40717 * 120.24414 * 207.32820 * 9 7 2 11 11 C 1.37619 * 119.74395 * 179.97438 * 10 9 7 12 12 C 1.38630 * 120.24776 * 359.97438 * 11 10 9 13 13 C 1.50708 * 119.74697 * 180.02562 * 12 11 10 14 14 N 1.46902 * 109.47003 * 90.00031 * 13 12 11 15 15 C 1.46848 * 110.99784 * 296.28088 * 14 13 12 16 16 C 1.53046 * 109.51876 * 174.16003 * 15 14 13 17 17 C 1.53118 * 109.27724 * 59.18524 * 16 15 14 18 18 C 1.53126 * 109.15793 * 302.34051 * 17 16 15 19 19 C 1.46844 * 110.99915 * 172.07160 * 14 13 12 20 20 H 1.09006 * 109.45945 * 65.83467 * 19 14 13 21 21 C 1.52999 * 109.46621 * 305.85668 * 19 14 13 22 22 O 1.42904 * 109.46877 * 296.77772 * 21 19 14 23 23 C 1.38628 * 120.50356 * 0.27731 * 12 11 10 24 24 C 1.37615 * 120.24892 * 359.44756 * 23 12 11 25 25 H 0.96999 * 119.99856 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.12745 * 359.95247 * 10 9 7 27 27 H 1.07997 * 119.87351 * 180.02562 * 11 10 9 28 28 H 1.09000 * 109.47233 * 209.99832 * 13 12 11 29 29 H 1.08998 * 109.47023 * 330.00113 * 13 12 11 30 30 H 1.08994 * 109.46612 * 294.17717 * 15 14 13 31 31 H 1.09002 * 109.46143 * 54.14714 * 15 14 13 32 32 H 1.09001 * 109.50202 * 299.23810 * 16 15 14 33 33 H 1.09003 * 109.53148 * 179.14043 * 16 15 14 34 34 H 1.08998 * 109.52174 * 182.43723 * 17 16 15 35 35 H 1.08993 * 109.52557 * 62.24440 * 17 16 15 36 36 H 1.08998 * 109.50339 * 297.71739 * 18 17 16 37 37 H 1.09003 * 109.53343 * 177.61723 * 18 17 16 38 38 H 1.09000 * 109.47016 * 56.76984 * 21 19 14 39 39 H 1.08997 * 109.47606 * 176.77445 * 21 19 14 40 40 H 0.96696 * 113.99786 * 179.97438 * 22 21 19 41 41 H 1.08008 * 119.87577 * 179.70844 * 23 12 11 42 42 H 1.07999 * 120.12878 * 180.27807 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0081 -1.2120 0.0005 8 1 3.0599 -1.2281 0.2451 9 6 1.3380 -2.4153 -0.3190 10 6 1.7948 -3.6405 0.2009 11 6 1.1345 -4.8055 -0.1164 12 6 0.0230 -4.7750 -0.9444 13 6 -0.6919 -6.0575 -1.2841 14 7 -1.7429 -6.3104 -0.2894 15 6 -1.1656 -6.5192 1.0446 16 6 -2.2903 -6.6342 2.0762 17 6 -3.1996 -7.8085 1.7038 18 6 -3.7493 -7.5901 0.2914 19 6 -2.5825 -7.4472 -0.6885 20 1 -1.9865 -8.3599 -0.6788 21 6 -3.1269 -7.2088 -2.0983 22 8 -3.9687 -6.0540 -2.0948 23 6 -0.4327 -3.5743 -1.4665 24 6 0.2085 -2.3964 -1.1581 25 1 -0.4850 0.8400 0.0004 26 1 2.6604 -3.6666 0.8461 27 1 1.4830 -5.7470 0.2817 28 1 -1.1411 -5.9720 -2.2735 29 1 0.0200 -6.8828 -1.2784 30 1 -0.5763 -7.4361 1.0460 31 1 -0.5244 -5.6752 1.2990 32 1 -2.8716 -5.7122 2.0852 33 1 -1.8625 -6.8044 3.0642 34 1 -4.0266 -7.8675 2.4114 35 1 -2.6275 -8.7357 1.7326 36 1 -4.3536 -6.6831 0.2723 37 1 -4.3639 -8.4431 0.0035 38 1 -2.2966 -7.0510 -2.7865 39 1 -3.7030 -8.0774 -2.4171 40 1 -4.3496 -5.8424 -2.9580 41 1 -1.2969 -3.5628 -2.1143 42 1 -0.1509 -1.4616 -1.5623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342704027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:47 Heat of formation + Delta-G solvation = -55.845164 kcal Electronic energy + Delta-G solvation = -21640.920496 eV Core-core repulsion = 18584.025099 eV Total energy + Delta-G solvation = -3056.895397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62029 -39.14573 -37.14604 -35.86300 -34.41638 -32.44031 -31.66648 -31.02878 -28.48393 -27.07415 -25.80221 -23.70801 -22.87800 -22.19767 -21.42891 -20.48990 -19.18308 -18.16964 -17.17524 -16.95847 -16.69662 -15.93019 -15.67779 -15.40642 -15.11182 -14.91284 -14.68392 -14.20125 -14.10675 -14.02216 -13.77087 -13.62022 -13.26707 -13.04199 -12.70650 -12.58671 -12.43101 -12.26386 -12.11269 -12.08291 -11.63755 -11.47740 -11.25812 -11.12850 -11.06193 -10.98470 -10.62285 -9.30756 -9.21538 -8.94677 -8.58707 -6.32017 0.98184 1.16709 1.37565 1.49373 1.52918 2.22074 2.70009 3.14440 3.54241 3.78426 3.89347 3.96821 4.03610 4.18578 4.33616 4.41511 4.42806 4.51780 4.52460 4.57966 4.61146 4.68803 4.76880 4.87903 4.95561 4.98819 5.06836 5.08937 5.13094 5.18504 5.29345 5.34895 5.40324 5.48973 5.57023 5.74315 5.97253 6.12374 6.22256 6.37075 6.41466 6.44804 6.73909 6.97165 7.05910 7.07071 8.38355 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026322 B = 0.004314 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.483360 B = 6488.679042 C = 6715.877515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.506 4.506 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.241 4.241 11 C -0.084 4.084 12 C -0.188 4.188 13 C 0.122 3.878 14 N -0.534 5.534 15 C 0.056 3.944 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.102 4.102 19 C 0.078 3.922 20 H 0.057 0.943 21 C 0.079 3.921 22 O -0.577 6.577 23 C -0.084 4.084 24 C -0.186 4.186 25 H 0.286 0.714 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.387 0.613 41 H 0.098 0.902 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.683 -14.100 -2.047 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.536 4.536 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.260 4.260 11 C -0.102 4.102 12 C -0.189 4.189 13 C -0.004 4.004 14 N -0.259 5.259 15 C -0.072 4.072 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.030 4.030 20 H 0.075 0.925 21 C 0.001 3.999 22 O -0.383 6.383 23 C -0.103 4.103 24 C -0.206 4.206 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.235 0.765 41 H 0.116 0.884 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.039 -13.555 -1.384 15.336 hybrid contribution 0.821 0.474 -0.491 1.068 sum -6.217 -13.081 -1.875 14.605 Atomic orbital electron populations 1.69892 1.09016 1.30367 1.36621 1.26751 0.95486 1.04468 0.91317 0.85255 0.78715 0.75682 0.80028 1.18428 1.19253 1.18389 1.19794 0.97309 0.92318 1.44199 0.90826 1.17939 0.92035 0.93081 0.89192 1.21163 1.04320 0.93554 1.06977 1.20627 0.95553 0.96484 0.97584 1.19291 0.99228 0.94449 1.05969 1.20745 0.91170 0.93022 0.95461 1.61850 1.21793 1.40406 1.01842 1.22072 0.96460 0.99315 0.89364 1.21568 0.96873 0.99005 0.97883 1.21568 0.99181 0.97555 0.96866 1.21475 0.96578 1.01885 0.94012 1.21865 0.94601 0.91498 0.94989 0.92513 1.22358 0.93470 0.88430 0.95628 1.86617 1.66794 1.47907 1.37019 1.20679 0.97703 0.92568 0.99374 1.21225 1.00318 0.96739 1.02313 0.90358 0.88729 0.87202 0.90293 0.94975 0.94809 0.92550 0.93516 0.90779 0.90764 0.91217 0.92672 0.89918 0.93456 0.91057 0.76490 0.88387 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.01 10.99 21.83 0.24 -45.77 16 2 C 0.03 1.77 5.18 85.26 0.44 2.21 16 3 Si 0.98 39.84 29.59 68.60 2.03 41.87 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.51 -28.56 9.06 23.46 0.21 -28.35 16 8 H 0.07 3.99 7.89 -2.91 -0.02 3.97 16 9 C 0.08 4.51 5.55 -21.29 -0.12 4.39 16 10 C -0.24 -12.28 9.80 22.73 0.22 -12.05 16 11 C -0.08 -3.75 7.78 22.22 0.17 -3.58 16 12 C -0.19 -8.20 4.85 -19.67 -0.10 -8.29 16 13 C 0.12 4.22 4.80 85.56 0.41 4.63 16 14 N -0.53 -17.50 4.42 -875.62 -3.87 -21.37 16 15 C 0.06 1.79 5.10 86.33 0.44 2.23 16 16 C -0.12 -3.22 6.09 30.65 0.19 -3.03 16 17 C -0.11 -2.49 6.00 30.68 0.18 -2.31 16 18 C -0.10 -2.36 5.21 30.65 0.16 -2.20 16 19 C 0.08 1.97 2.23 44.94 0.10 2.07 16 20 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 21 C 0.08 1.72 6.25 71.98 0.45 2.17 16 22 O -0.58 -14.81 12.76 -148.98 -1.90 -16.71 16 23 C -0.08 -4.13 9.67 22.22 0.21 -3.91 16 24 C -0.19 -10.34 8.67 22.73 0.20 -10.15 16 25 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 26 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 27 H 0.11 4.24 7.97 -2.91 -0.02 4.22 16 28 H 0.08 2.57 5.63 -2.39 -0.01 2.55 16 29 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 2.19 5.71 -2.39 -0.01 2.17 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.58 7.58 -2.39 -0.02 1.57 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.03 5.97 -2.39 -0.01 1.02 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.39 6.37 9.12 -74.06 -0.68 5.70 16 41 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 42 H 0.09 5.54 6.27 -2.91 -0.02 5.52 16 Total: -1.00 -65.58 329.06 0.01 -65.57 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.33 Total: 32.58 kcal Atomic # 6 Polarization: -59.34 SS G_CDS: 3.18 Total: -56.16 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -3.63 Total: -67.14 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.90 Total: -16.71 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -65.58 0.01 -65.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342704027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.727 kcal (2) G-P(sol) polarization free energy of solvation -65.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds