Wall clock time and date at job start Mon Mar 30 2020 01:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00453 * 2 1 4 4 H 1.48495 * 109.47294 * 270.00272 * 3 2 1 5 5 H 1.48505 * 109.46857 * 30.00836 * 3 2 1 6 6 H 1.48503 * 109.46912 * 149.99913 * 3 2 1 7 7 C 1.39954 * 119.99399 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99212 * 191.27115 * 7 2 1 9 9 C 1.41392 * 120.00000 * 11.26956 * 7 2 1 10 10 C 1.40713 * 120.24811 * 28.63618 * 9 7 2 11 11 C 1.37616 * 119.74693 * 180.30007 * 10 9 7 12 12 C 1.38634 * 120.24859 * 359.45906 * 11 10 9 13 13 C 1.50698 * 119.75154 * 180.26279 * 12 11 10 14 14 N 1.46901 * 109.47203 * 270.25582 * 13 12 11 15 15 C 1.46900 * 111.00267 * 182.46159 * 14 13 12 16 16 C 1.52998 * 110.01673 * 304.35930 * 15 14 13 17 17 O 1.42896 * 109.46979 * 300.15434 * 16 15 14 18 18 C 1.53877 * 110.03418 * 182.91462 * 15 14 13 19 19 C 1.54265 * 106.60023 * 240.71727 * 18 15 14 20 20 C 1.54896 * 104.19454 * 23.61053 * 19 18 15 21 21 C 1.54264 * 110.03115 * 65.74951 * 15 14 13 22 22 C 1.38637 * 120.49654 * 0.51951 * 12 11 10 23 23 C 1.37612 * 120.25326 * 359.76660 * 22 12 11 24 24 H 0.97007 * 119.99345 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.12539 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.87511 * 179.72366 * 11 10 9 27 27 H 1.08991 * 109.47057 * 30.25331 * 13 12 11 28 28 H 1.09001 * 109.47226 * 150.25855 * 13 12 11 29 29 H 1.00904 * 110.99968 * 306.41636 * 14 13 12 30 30 H 1.09001 * 109.47138 * 60.14617 * 16 15 14 31 31 H 1.08994 * 109.47113 * 180.15310 * 16 15 14 32 32 H 0.96703 * 114.00472 * 180.02562 * 17 16 15 33 33 H 1.09003 * 110.02992 * 0.02562 * 18 15 14 34 34 H 1.09000 * 110.03162 * 121.42862 * 18 15 14 35 35 H 1.08994 * 110.48254 * 264.93417 * 19 18 15 36 36 H 1.08998 * 110.48326 * 142.28724 * 19 18 15 37 37 H 1.08996 * 110.75375 * 203.74506 * 20 19 18 38 38 H 1.08994 * 110.75602 * 80.37183 * 20 19 18 39 39 H 1.08996 * 110.48644 * 214.35536 * 21 15 14 40 40 H 1.09003 * 110.48398 * 336.99764 * 21 15 14 41 41 H 1.08004 * 119.87033 * 179.74081 * 22 12 11 42 42 H 1.08007 * 120.13076 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4399 2.6526 0.7002 6 1 3.5399 1.4399 0.7001 7 6 2.0079 -1.2121 -0.0005 8 1 3.0723 -1.2212 0.1823 9 6 1.3212 -2.4246 -0.2404 10 6 0.1606 -2.4366 -1.0359 11 6 -0.5031 -3.6216 -1.2576 12 6 -0.0260 -4.8023 -0.7097 13 6 -0.7583 -6.0945 -0.9645 14 7 -1.7707 -6.2978 0.0803 15 6 -2.4664 -7.5786 -0.1028 16 6 -3.0731 -7.6492 -1.5056 17 8 -4.0026 -6.5776 -1.6770 18 6 -3.5696 -7.7357 0.9583 19 6 -3.2183 -8.9958 1.7761 20 6 -1.6895 -9.1574 1.5869 21 6 -1.4832 -8.7487 0.1072 22 6 1.1168 -4.8024 0.0753 23 6 1.7933 -3.6283 0.3150 24 1 -0.4849 0.8402 0.0004 25 1 -0.2104 -1.5186 -1.4673 26 1 -1.3965 -3.6324 -1.8641 27 1 -1.2452 -6.0501 -1.9385 28 1 -0.0497 -6.9227 -0.9498 29 1 -1.3588 -6.2382 0.9995 30 1 -2.2804 -7.5649 -2.2490 31 1 -3.5889 -8.6012 -1.6308 32 1 -4.4272 -6.5602 -2.5456 33 1 -3.5891 -6.8614 1.6089 34 1 -4.5379 -7.8627 0.4742 35 1 -3.7454 -9.8649 1.3828 36 1 -3.4588 -8.8466 2.8287 37 1 -1.3877 -10.1923 1.7475 38 1 -1.1450 -8.4874 2.2522 39 1 -1.7300 -9.5780 -0.5556 40 1 -0.4574 -8.4193 -0.0581 41 1 1.4772 -5.7275 0.5005 42 1 2.6832 -3.6306 0.9272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342715800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:05 Heat of formation + Delta-G solvation = -43.527922 kcal Electronic energy + Delta-G solvation = -21235.210802 eV Core-core repulsion = 18178.849521 eV Total energy + Delta-G solvation = -3056.361281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.51582 -37.49116 -35.97852 -34.39743 -33.07730 -30.26794 -29.23045 -28.75531 -28.26647 -26.08837 -24.34724 -22.90095 -20.94175 -20.69229 -19.68834 -18.86540 -17.22090 -17.10357 -16.22915 -15.68136 -15.23901 -14.63158 -14.31095 -14.09306 -13.74746 -13.63738 -13.28441 -13.10906 -12.48445 -12.24536 -11.98486 -11.82314 -11.61746 -11.39943 -11.24379 -11.10318 -11.06066 -10.95773 -10.89374 -10.59091 -10.42519 -10.31955 -10.25713 -9.78581 -9.52622 -9.26639 -9.13327 -7.86781 -7.37546 -7.18494 -6.63981 -4.30875 2.80357 3.10842 3.13352 3.14561 3.22213 3.99001 4.17275 4.51030 4.64142 4.67784 4.84976 5.01734 5.27214 5.32055 5.42708 5.45281 5.59993 5.60845 5.72610 5.76065 5.81585 5.88253 5.93188 6.00454 6.06666 6.13185 6.31377 6.34636 6.42488 6.45508 6.54608 7.02133 7.15123 7.35834 7.42959 7.57585 7.68950 7.78166 7.84611 7.98007 8.12883 8.21684 8.37418 8.72220 8.96781 9.04314 10.29988 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.003761 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.495531 B = 7442.769687 C = 7762.239669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.111 3.889 10 C -0.160 4.160 11 C -0.079 4.079 12 C -0.206 4.206 13 C 0.121 3.879 14 N -0.658 5.658 15 C 0.114 3.886 16 C 0.091 3.909 17 O -0.550 6.550 18 C -0.107 4.107 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.157 4.157 22 C -0.090 4.090 23 C -0.223 4.223 24 H 0.279 0.721 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.018 0.982 29 H 0.339 0.661 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.369 0.631 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 -14.407 -1.091 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.093 0.907 9 C 0.109 3.891 10 C -0.180 4.180 11 C -0.098 4.098 12 C -0.208 4.208 13 C -0.006 4.006 14 N -0.289 5.289 15 C 0.022 3.978 16 C 0.013 3.987 17 O -0.353 6.353 18 C -0.145 4.145 19 C -0.165 4.165 20 C -0.160 4.160 21 C -0.197 4.197 22 C -0.109 4.109 23 C -0.243 4.243 24 H 0.090 0.910 25 H 0.136 0.864 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.158 0.842 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.214 0.786 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.274 -13.729 -0.789 15.115 hybrid contribution 0.901 -0.002 -0.224 0.928 sum -5.373 -13.730 -1.013 14.779 Atomic orbital electron populations 1.69813 1.07374 1.28898 1.36540 1.25880 0.94801 1.01102 0.92505 0.86296 0.80335 0.80770 0.79159 1.19418 1.20351 1.18765 1.19577 0.95958 0.90666 1.43467 0.90688 1.17630 0.91503 0.91951 0.88019 1.21366 0.98702 0.96519 1.01406 1.20532 0.97522 0.92623 0.99168 1.18956 0.99158 0.93706 1.08933 1.20649 0.90941 0.94411 0.94643 1.60765 1.31825 1.29948 1.06343 1.21592 0.93506 0.88728 0.94002 1.22239 0.91453 0.88786 0.96251 1.86671 1.59478 1.51249 1.37948 1.22133 0.97899 0.97724 0.96749 1.22419 0.95865 0.98146 1.00067 1.22446 0.96418 1.00923 0.96217 1.23126 1.00492 0.98878 0.97198 1.20354 0.95791 0.96196 0.98581 1.20974 1.03052 0.93501 1.06768 0.91033 0.86416 0.89376 0.91911 0.96415 0.84183 0.93837 0.94221 0.78629 0.90616 0.91315 0.92031 0.91733 0.91787 0.91373 0.91578 0.90903 0.90036 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.36 10.86 55.55 0.60 -20.76 16 2 C 0.07 1.90 5.25 -17.34 -0.09 1.81 16 3 Si 0.91 19.16 29.57 -169.99 -5.03 14.14 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.47 -12.68 9.06 -37.74 -0.34 -13.02 16 8 H 0.07 1.96 7.87 -52.48 -0.41 1.55 16 9 C 0.11 3.04 5.55 -106.83 -0.59 2.44 16 10 C -0.16 -4.29 8.66 -38.87 -0.34 -4.62 16 11 C -0.08 -1.92 9.67 -39.66 -0.38 -2.31 16 12 C -0.21 -4.54 5.39 -104.33 -0.56 -5.10 16 13 C 0.12 2.17 5.02 -4.98 -0.02 2.15 16 14 N -0.66 -11.06 5.88 -100.09 -0.59 -11.64 16 15 C 0.11 1.52 0.62 -130.48 -0.08 1.44 16 16 C 0.09 1.14 5.11 37.16 0.19 1.33 16 17 O -0.55 -7.60 13.06 -35.23 -0.46 -8.06 16 18 C -0.11 -1.35 6.00 -25.61 -0.15 -1.50 16 19 C -0.13 -1.30 6.83 -25.07 -0.17 -1.47 16 20 C -0.12 -1.28 6.91 -24.73 -0.17 -1.45 16 21 C -0.16 -1.82 5.81 -25.07 -0.15 -1.96 16 22 C -0.09 -2.03 9.67 -39.66 -0.38 -2.42 16 23 C -0.22 -5.58 9.80 -38.87 -0.38 -5.96 16 24 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 25 H 0.12 3.27 6.23 -52.48 -0.33 2.94 16 26 H 0.09 2.02 8.06 -52.49 -0.42 1.59 16 27 H 0.06 1.12 6.37 -51.93 -0.33 0.79 16 28 H 0.02 0.30 6.15 -51.93 -0.32 -0.02 16 29 H 0.34 5.83 8.69 -39.29 -0.34 5.49 16 30 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.37 3.36 9.12 45.56 0.42 3.77 16 33 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 34 H 0.07 0.86 7.47 -51.93 -0.39 0.47 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 40 H 0.07 0.92 6.09 -51.93 -0.32 0.60 16 41 H 0.08 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -29.27 333.44 -9.77 -39.04 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.69 Total: 12.91 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: -3.63 Total: -30.65 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.01 Total: -32.40 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.46 Total: -8.06 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.27 -9.77 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342715800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.485 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds