Wall clock time and date at job start Mon Mar 30 2020 01:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00453 * 2 1 4 4 H 1.48495 * 109.47294 * 270.00272 * 3 2 1 5 5 H 1.48505 * 109.46857 * 30.00836 * 3 2 1 6 6 H 1.48503 * 109.46912 * 149.99913 * 3 2 1 7 7 C 1.39954 * 119.99399 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99212 * 191.27115 * 7 2 1 9 9 C 1.41392 * 120.00000 * 11.26956 * 7 2 1 10 10 C 1.40713 * 120.24811 * 28.63618 * 9 7 2 11 11 C 1.37616 * 119.74693 * 180.30007 * 10 9 7 12 12 C 1.38634 * 120.24859 * 359.45906 * 11 10 9 13 13 C 1.50698 * 119.75154 * 180.26279 * 12 11 10 14 14 N 1.46901 * 109.47203 * 270.25582 * 13 12 11 15 15 C 1.46900 * 111.00267 * 182.46159 * 14 13 12 16 16 C 1.52998 * 110.01673 * 304.35930 * 15 14 13 17 17 O 1.42896 * 109.46979 * 300.15434 * 16 15 14 18 18 C 1.53877 * 110.03418 * 182.91462 * 15 14 13 19 19 C 1.54265 * 106.60023 * 240.71727 * 18 15 14 20 20 C 1.54896 * 104.19454 * 23.61053 * 19 18 15 21 21 C 1.54264 * 110.03115 * 65.74951 * 15 14 13 22 22 C 1.38637 * 120.49654 * 0.51951 * 12 11 10 23 23 C 1.37612 * 120.25326 * 359.76660 * 22 12 11 24 24 H 0.97007 * 119.99345 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.12539 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.87511 * 179.72366 * 11 10 9 27 27 H 1.08991 * 109.47057 * 30.25331 * 13 12 11 28 28 H 1.09001 * 109.47226 * 150.25855 * 13 12 11 29 29 H 1.00904 * 110.99968 * 306.41636 * 14 13 12 30 30 H 1.09001 * 109.47138 * 60.14617 * 16 15 14 31 31 H 1.08994 * 109.47113 * 180.15310 * 16 15 14 32 32 H 0.96703 * 114.00472 * 180.02562 * 17 16 15 33 33 H 1.09003 * 110.02992 * 0.02562 * 18 15 14 34 34 H 1.09000 * 110.03162 * 121.42862 * 18 15 14 35 35 H 1.08994 * 110.48254 * 264.93417 * 19 18 15 36 36 H 1.08998 * 110.48326 * 142.28724 * 19 18 15 37 37 H 1.08996 * 110.75375 * 203.74506 * 20 19 18 38 38 H 1.08994 * 110.75602 * 80.37183 * 20 19 18 39 39 H 1.08996 * 110.48644 * 214.35536 * 21 15 14 40 40 H 1.09003 * 110.48398 * 336.99764 * 21 15 14 41 41 H 1.08004 * 119.87033 * 179.74081 * 22 12 11 42 42 H 1.08007 * 120.13076 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4399 2.6526 0.7002 6 1 3.5399 1.4399 0.7001 7 6 2.0079 -1.2121 -0.0005 8 1 3.0723 -1.2212 0.1823 9 6 1.3212 -2.4246 -0.2404 10 6 0.1606 -2.4366 -1.0359 11 6 -0.5031 -3.6216 -1.2576 12 6 -0.0260 -4.8023 -0.7097 13 6 -0.7583 -6.0945 -0.9645 14 7 -1.7707 -6.2978 0.0803 15 6 -2.4664 -7.5786 -0.1028 16 6 -3.0731 -7.6492 -1.5056 17 8 -4.0026 -6.5776 -1.6770 18 6 -3.5696 -7.7357 0.9583 19 6 -3.2183 -8.9958 1.7761 20 6 -1.6895 -9.1574 1.5869 21 6 -1.4832 -8.7487 0.1072 22 6 1.1168 -4.8024 0.0753 23 6 1.7933 -3.6283 0.3150 24 1 -0.4849 0.8402 0.0004 25 1 -0.2104 -1.5186 -1.4673 26 1 -1.3965 -3.6324 -1.8641 27 1 -1.2452 -6.0501 -1.9385 28 1 -0.0497 -6.9227 -0.9498 29 1 -1.3588 -6.2382 0.9995 30 1 -2.2804 -7.5649 -2.2490 31 1 -3.5889 -8.6012 -1.6308 32 1 -4.4272 -6.5602 -2.5456 33 1 -3.5891 -6.8614 1.6089 34 1 -4.5379 -7.8627 0.4742 35 1 -3.7454 -9.8649 1.3828 36 1 -3.4588 -8.8466 2.8287 37 1 -1.3877 -10.1923 1.7475 38 1 -1.1450 -8.4874 2.2522 39 1 -1.7300 -9.5780 -0.5556 40 1 -0.4574 -8.4193 -0.0581 41 1 1.4772 -5.7275 0.5005 42 1 2.6832 -3.6306 0.9272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342715800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:04 Heat of formation + Delta-G solvation = -62.438327 kcal Electronic energy + Delta-G solvation = -21236.030819 eV Core-core repulsion = 18178.849521 eV Total energy + Delta-G solvation = -3057.181298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59992 -39.30874 -36.95210 -36.04089 -34.65953 -31.91167 -31.13876 -29.77767 -29.47640 -27.71105 -25.59315 -24.33296 -22.84508 -21.91079 -21.20163 -19.92065 -19.19288 -18.08191 -17.40390 -17.08512 -16.77644 -15.82974 -15.75535 -15.48244 -15.30753 -15.03397 -14.58329 -14.32571 -14.13361 -13.79400 -13.58960 -13.34395 -13.09546 -12.79482 -12.66551 -12.56098 -12.38036 -12.14028 -11.95852 -11.90441 -11.82444 -11.49048 -11.39192 -11.32368 -11.18776 -11.04491 -10.74422 -9.33089 -9.24580 -9.00885 -8.56424 -6.34174 0.96652 1.16106 1.37824 1.50470 1.52295 2.22337 2.73691 3.23234 3.49978 3.71345 3.76818 3.86444 4.15290 4.30722 4.31870 4.38499 4.42259 4.52427 4.54109 4.58423 4.63122 4.71218 4.80209 4.87291 4.92936 4.98473 5.08423 5.10083 5.16429 5.18727 5.23888 5.39254 5.44662 5.48301 5.50127 5.74042 5.96152 6.12826 6.24526 6.39654 6.42085 6.57957 6.73826 6.96978 7.02784 7.06197 8.39806 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.003761 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.495531 B = 7442.769687 C = 7762.239669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.031 3.969 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.078 3.922 10 C -0.184 4.184 11 C -0.088 4.088 12 C -0.193 4.193 13 C 0.132 3.868 14 N -0.674 5.674 15 C 0.108 3.892 16 C 0.088 3.912 17 O -0.577 6.577 18 C -0.106 4.106 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.152 4.152 22 C -0.088 4.088 23 C -0.237 4.237 24 H 0.285 0.715 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.334 0.666 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.386 0.614 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 -16.444 -1.040 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.076 3.924 10 C -0.203 4.203 11 C -0.107 4.107 12 C -0.194 4.194 13 C 0.004 3.996 14 N -0.305 5.305 15 C 0.016 3.984 16 C 0.010 3.990 17 O -0.384 6.384 18 C -0.144 4.144 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.191 4.191 22 C -0.107 4.107 23 C -0.257 4.257 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.153 0.847 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.235 0.765 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.133 0.867 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.394 -15.794 -0.753 17.056 hybrid contribution 0.833 0.475 -0.256 0.993 sum -5.561 -15.319 -1.009 16.328 Atomic orbital electron populations 1.69891 1.08929 1.30152 1.37335 1.26766 0.95583 1.04488 0.91410 0.85160 0.78909 0.75878 0.79447 1.18676 1.19358 1.18200 1.19836 0.96153 0.91896 1.45623 0.90811 1.17968 0.92287 0.93153 0.89028 1.21300 0.99639 0.96759 1.02630 1.20718 0.97681 0.92785 0.99529 1.19406 0.98661 0.94780 1.06560 1.20504 0.91361 0.92580 0.95135 1.60676 1.31325 1.32865 1.05603 1.21780 0.93794 0.87802 0.94985 1.22342 0.91548 0.89648 0.95453 1.86617 1.59949 1.52095 1.39719 1.22102 0.97763 0.98058 0.96501 1.22391 0.95898 0.97431 1.00040 1.22453 0.96353 1.01791 0.95248 1.23067 0.99160 0.98541 0.98335 1.20684 0.95359 0.96679 0.97967 1.21206 1.03673 0.93837 1.06974 0.90455 0.88494 0.88590 0.91742 0.94469 0.84728 0.93972 0.91532 0.76544 0.92963 0.91320 0.90263 0.91263 0.89875 0.92443 0.89617 0.91876 0.86655 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.23 10.86 21.83 0.24 -45.99 16 2 C 0.03 1.62 5.25 85.26 0.45 2.06 16 3 Si 0.99 39.94 29.57 68.60 2.03 41.97 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.50 -28.44 9.06 23.46 0.21 -28.23 16 8 H 0.07 3.99 7.87 -2.91 -0.02 3.97 16 9 C 0.08 4.39 5.55 -21.29 -0.12 4.27 16 10 C -0.18 -10.21 8.66 22.73 0.20 -10.02 16 11 C -0.09 -4.34 9.67 22.22 0.21 -4.12 16 12 C -0.19 -8.34 5.39 -19.68 -0.11 -8.44 16 13 C 0.13 4.49 5.02 85.56 0.43 4.92 16 14 N -0.67 -21.71 5.88 -470.57 -2.77 -24.48 16 15 C 0.11 2.64 0.62 4.25 0.00 2.64 16 16 C 0.09 1.98 5.11 71.98 0.37 2.35 16 17 O -0.58 -15.03 13.06 -148.98 -1.94 -16.97 16 18 C -0.11 -2.49 6.00 31.32 0.19 -2.30 16 19 C -0.12 -2.11 6.83 31.67 0.22 -1.90 16 20 C -0.12 -2.16 6.91 31.89 0.22 -1.94 16 21 C -0.15 -3.02 5.81 31.67 0.18 -2.83 16 22 C -0.09 -3.89 9.67 22.22 0.21 -3.67 16 23 C -0.24 -12.00 9.80 22.73 0.22 -11.77 16 24 H 0.28 14.31 8.30 -92.70 -0.77 13.55 16 25 H 0.10 5.69 6.23 -2.91 -0.02 5.67 16 26 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 27 H 0.06 2.19 6.37 -2.39 -0.02 2.17 16 28 H 0.04 1.14 6.15 -2.39 -0.01 1.12 16 29 H 0.33 11.14 8.69 -89.69 -0.78 10.36 16 30 H 0.04 0.95 6.46 -2.39 -0.02 0.93 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.39 6.43 9.12 -74.06 -0.68 5.76 16 33 H 0.05 1.46 7.92 -2.39 -0.02 1.44 16 34 H 0.07 1.59 7.47 -2.39 -0.02 1.57 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.39 7.85 -2.39 -0.02 1.37 16 40 H 0.06 1.39 6.09 -2.39 -0.01 1.38 16 41 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 42 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -64.86 333.44 0.02 -64.84 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -0.43 Total: 39.62 kcal Atomic # 6 Polarization: -61.88 SS G_CDS: 2.89 Total: -58.98 kcal Atomic # 7 Polarization: -67.94 SS G_CDS: -2.53 Total: -70.47 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -1.94 Total: -16.97 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -64.86 0.02 -64.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342715800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.397 kcal (2) G-P(sol) polarization free energy of solvation -64.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds