Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47287 * 299.99845 * 3 2 1 6 6 H 1.48498 * 109.47059 * 60.00048 * 3 2 1 7 7 C 1.39938 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00106 * 162.29890 * 7 2 1 9 9 C 1.41395 * 120.00091 * 342.02811 * 7 2 1 10 10 C 1.40718 * 120.23992 * 335.58937 * 9 7 2 11 11 C 1.37627 * 119.74306 * 179.70046 * 10 9 7 12 12 C 1.38637 * 120.24515 * 0.57982 * 11 10 9 13 13 C 1.50697 * 119.74922 * 179.69421 * 12 11 10 14 14 N 1.46896 * 109.47329 * 270.02688 * 13 12 11 15 15 C 1.46846 * 111.00214 * 45.78524 * 14 13 12 16 16 C 1.53035 * 109.52684 * 185.84275 * 15 14 13 17 17 C 1.53123 * 109.27799 * 300.82364 * 16 15 14 18 18 C 1.53002 * 109.52641 * 177.55917 * 17 16 15 19 19 O 1.42900 * 109.47019 * 65.31304 * 18 17 16 20 20 C 1.53121 * 109.16121 * 57.65123 * 17 16 15 21 21 C 1.46842 * 111.00207 * 170.00042 * 14 13 12 22 22 C 1.38637 * 120.50224 * 359.72155 * 12 11 10 23 23 C 1.37616 * 120.25048 * 359.97368 * 22 12 11 24 24 H 0.97005 * 120.00336 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.12906 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.87512 * 180.32356 * 11 10 9 27 27 H 1.09007 * 109.46497 * 30.02392 * 13 12 11 28 28 H 1.09002 * 109.47072 * 150.02104 * 13 12 11 29 29 H 1.09003 * 109.46524 * 305.85937 * 15 14 13 30 30 H 1.08996 * 109.46364 * 65.82692 * 15 14 13 31 31 H 1.08994 * 109.50805 * 180.88031 * 16 15 14 32 32 H 1.09002 * 109.50175 * 60.75761 * 16 15 14 33 33 H 1.09002 * 109.52283 * 297.74749 * 17 16 15 34 34 H 1.08992 * 109.47030 * 185.31530 * 18 17 16 35 35 H 1.08996 * 109.46410 * 305.31741 * 18 17 16 36 36 H 0.96700 * 113.99609 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.50276 * 182.40618 * 20 17 16 38 38 H 1.08996 * 109.53499 * 62.30876 * 20 17 16 39 39 H 1.09007 * 109.46338 * 294.16991 * 21 14 13 40 40 H 1.08994 * 109.46487 * 54.15266 * 21 14 13 41 41 H 1.07995 * 119.87238 * 179.97438 * 22 12 11 42 42 H 1.07997 * 120.13317 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0495 -1.2341 -0.2838 9 6 1.3527 -2.4064 0.3789 10 6 0.2233 -2.3603 1.2169 11 6 -0.4103 -3.5288 1.5738 12 6 0.0676 -4.7488 1.1206 13 6 -0.6307 -6.0219 1.5239 14 7 -0.0419 -6.5297 2.7702 15 6 0.1239 -5.4504 3.7520 16 6 0.8700 -5.9835 4.9772 17 6 0.0741 -7.1390 5.5905 18 6 0.8445 -7.7161 6.7798 19 8 0.9296 -6.7338 7.8141 20 6 -0.1262 -8.2283 4.5332 21 6 -0.8434 -7.6300 3.3209 22 6 1.1832 -4.8065 0.2997 23 6 1.8289 -3.6504 -0.0749 24 1 -0.4851 0.8401 0.0004 25 1 -0.1477 -1.4114 1.5751 26 1 -1.2804 -3.4955 2.2126 27 1 -1.6910 -5.8214 1.6783 28 1 -0.5126 -6.7662 0.7365 29 1 0.6951 -4.6369 3.3046 30 1 -0.8559 -5.0818 4.0555 31 1 0.9791 -5.1862 5.7123 32 1 1.8554 -6.3396 4.6767 33 1 -0.8968 -6.7746 5.9265 34 1 0.3244 -8.5966 7.1568 35 1 1.8485 -7.9959 6.4608 36 1 1.4066 -7.0315 8.6009 37 1 -0.7289 -9.0347 4.9512 38 1 0.8432 -8.6203 4.2257 39 1 -1.8188 -7.2512 3.6264 40 1 -0.9746 -8.3997 2.5604 41 1 1.5470 -5.7624 -0.0471 42 1 2.6976 -3.6975 -0.7149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342721259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = -45.206190 kcal Electronic energy + Delta-G solvation = -21178.762679 eV Core-core repulsion = 18122.328623 eV Total energy + Delta-G solvation = -3056.434056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.24365 -37.63710 -36.56911 -34.22084 -33.06816 -30.71736 -30.04504 -29.25224 -27.57317 -25.56071 -23.47693 -22.78010 -21.47336 -20.86638 -19.75527 -19.41745 -17.39409 -17.27316 -15.72115 -15.29732 -15.11505 -14.83484 -14.46127 -14.16474 -13.96559 -13.57365 -13.31000 -12.92230 -12.81791 -12.46733 -12.11265 -11.97098 -11.86897 -11.58478 -11.39624 -11.05656 -10.97460 -10.90201 -10.59654 -10.52355 -10.35919 -10.24138 -10.17641 -9.88802 -9.49623 -9.35453 -9.09814 -7.87765 -7.39791 -7.25303 -6.75273 -4.33180 2.73991 3.07675 3.10575 3.13487 3.18561 3.94144 4.09654 4.34670 4.70330 4.81937 4.87817 5.07028 5.32160 5.35430 5.44473 5.59971 5.63476 5.72652 5.77639 5.83716 5.90362 5.96051 6.03023 6.13124 6.19514 6.32903 6.35381 6.41849 6.45528 6.59043 6.64962 6.96950 7.09234 7.28952 7.39894 7.49958 7.56325 7.59071 7.64213 7.91884 8.07699 8.16122 8.32304 8.65842 8.91560 8.99638 10.19149 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.003958 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.302678 B = 7072.450129 C = 7743.695358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.166 4.166 11 C -0.093 4.093 12 C -0.215 4.215 13 C 0.120 3.880 14 N -0.533 5.533 15 C 0.055 3.945 16 C -0.105 4.105 17 C -0.089 4.089 18 C 0.082 3.918 19 O -0.572 6.572 20 C -0.107 4.107 21 C 0.056 3.944 22 C -0.069 4.069 23 C -0.229 4.229 24 H 0.279 0.721 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.375 0.625 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.027 0.973 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -11.823 9.935 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.110 3.890 10 C -0.185 4.185 11 C -0.112 4.112 12 C -0.216 4.216 13 C -0.007 4.007 14 N -0.258 5.258 15 C -0.073 4.073 16 C -0.143 4.143 17 C -0.108 4.108 18 C 0.004 3.996 19 O -0.377 6.377 20 C -0.145 4.145 21 C -0.073 4.073 22 C -0.088 4.088 23 C -0.249 4.249 24 H 0.090 0.910 25 H 0.134 0.866 26 H 0.100 0.900 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.221 0.779 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.741 -11.503 9.361 14.849 hybrid contribution -0.252 0.726 0.527 0.932 sum -0.993 -10.777 9.888 14.660 Atomic orbital electron populations 1.69837 1.07598 1.29064 1.35338 1.25906 0.94693 1.01296 0.92222 0.86304 0.81074 0.81068 0.78535 1.18380 1.20022 1.19715 1.19636 0.98131 0.91341 1.40097 0.90442 1.17624 0.91015 0.92025 0.88296 1.21279 0.99427 0.96633 1.01184 1.20529 0.98338 0.92853 0.99499 1.18862 1.01686 0.92362 1.08702 1.20731 0.94543 0.95003 0.90383 1.62110 1.49277 1.09547 1.04865 1.22170 0.98852 0.94557 0.91673 1.21583 0.99045 0.97263 0.96425 1.21221 0.99474 0.96766 0.93343 1.22247 0.99024 0.90124 0.88191 1.86519 1.79887 1.42401 1.28857 1.21543 1.01417 0.96817 0.94726 1.22017 0.94309 0.94769 0.96170 1.20329 0.94906 0.96309 0.97228 1.20965 1.03821 0.92907 1.07204 0.90973 0.86587 0.90004 0.95982 0.91719 0.88563 0.95896 0.91319 0.91549 0.91101 0.94125 0.93596 0.77859 0.92005 0.91011 0.95529 0.91106 0.89419 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.62 10.96 55.55 0.61 -20.01 16 2 C 0.08 1.93 5.14 -17.35 -0.09 1.84 16 3 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.37 9.05 -37.74 -0.34 -12.71 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 10 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 11 C -0.09 -2.17 7.75 -39.66 -0.31 -2.47 16 12 C -0.21 -4.66 4.15 -104.33 -0.43 -5.09 16 13 C 0.12 2.17 5.42 -4.98 -0.03 2.15 16 14 N -0.53 -8.86 4.80 -236.12 -1.13 -9.99 16 15 C 0.06 0.95 4.57 -3.84 -0.02 0.93 16 16 C -0.11 -1.56 5.25 -26.65 -0.14 -1.70 16 17 C -0.09 -1.11 2.49 -90.49 -0.23 -1.33 16 18 C 0.08 0.84 6.43 37.16 0.24 1.08 16 19 O -0.57 -6.27 13.26 -35.23 -0.47 -6.74 16 20 C -0.11 -1.22 5.38 -26.65 -0.14 -1.36 16 21 C 0.06 0.75 5.42 -3.83 -0.02 0.73 16 22 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 23 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 24 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 25 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 26 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.02 0.39 8.02 -51.92 -0.42 -0.02 16 28 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 29 H 0.10 1.94 5.64 -51.93 -0.29 1.65 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 1.05 7.90 -51.93 -0.41 0.64 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.38 2.27 9.12 45.56 0.42 2.69 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -28.46 333.28 -10.27 -38.73 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.07 Total: 7.42 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -3.20 Total: -28.17 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: -0.52 Total: -30.00 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.47 Total: -6.74 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.46 -10.27 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342721259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.478 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds