Wall clock time and date at job start Mon Mar 30 2020 01:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47287 * 299.99845 * 3 2 1 6 6 H 1.48498 * 109.47059 * 60.00048 * 3 2 1 7 7 C 1.39938 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00106 * 162.29890 * 7 2 1 9 9 C 1.41395 * 120.00091 * 342.02811 * 7 2 1 10 10 C 1.40718 * 120.23992 * 335.58937 * 9 7 2 11 11 C 1.37627 * 119.74306 * 179.70046 * 10 9 7 12 12 C 1.38637 * 120.24515 * 0.57982 * 11 10 9 13 13 C 1.50697 * 119.74922 * 179.69421 * 12 11 10 14 14 N 1.46896 * 109.47329 * 270.02688 * 13 12 11 15 15 C 1.46846 * 111.00214 * 45.78524 * 14 13 12 16 16 C 1.53035 * 109.52684 * 185.84275 * 15 14 13 17 17 C 1.53123 * 109.27799 * 300.82364 * 16 15 14 18 18 C 1.53002 * 109.52641 * 177.55917 * 17 16 15 19 19 O 1.42900 * 109.47019 * 65.31304 * 18 17 16 20 20 C 1.53121 * 109.16121 * 57.65123 * 17 16 15 21 21 C 1.46842 * 111.00207 * 170.00042 * 14 13 12 22 22 C 1.38637 * 120.50224 * 359.72155 * 12 11 10 23 23 C 1.37616 * 120.25048 * 359.97368 * 22 12 11 24 24 H 0.97005 * 120.00336 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.12906 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.87512 * 180.32356 * 11 10 9 27 27 H 1.09007 * 109.46497 * 30.02392 * 13 12 11 28 28 H 1.09002 * 109.47072 * 150.02104 * 13 12 11 29 29 H 1.09003 * 109.46524 * 305.85937 * 15 14 13 30 30 H 1.08996 * 109.46364 * 65.82692 * 15 14 13 31 31 H 1.08994 * 109.50805 * 180.88031 * 16 15 14 32 32 H 1.09002 * 109.50175 * 60.75761 * 16 15 14 33 33 H 1.09002 * 109.52283 * 297.74749 * 17 16 15 34 34 H 1.08992 * 109.47030 * 185.31530 * 18 17 16 35 35 H 1.08996 * 109.46410 * 305.31741 * 18 17 16 36 36 H 0.96700 * 113.99609 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.50276 * 182.40618 * 20 17 16 38 38 H 1.08996 * 109.53499 * 62.30876 * 20 17 16 39 39 H 1.09007 * 109.46338 * 294.16991 * 21 14 13 40 40 H 1.08994 * 109.46487 * 54.15266 * 21 14 13 41 41 H 1.07995 * 119.87238 * 179.97438 * 22 12 11 42 42 H 1.07997 * 120.13317 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0495 -1.2341 -0.2838 9 6 1.3527 -2.4064 0.3789 10 6 0.2233 -2.3603 1.2169 11 6 -0.4103 -3.5288 1.5738 12 6 0.0676 -4.7488 1.1206 13 6 -0.6307 -6.0219 1.5239 14 7 -0.0419 -6.5297 2.7702 15 6 0.1239 -5.4504 3.7520 16 6 0.8700 -5.9835 4.9772 17 6 0.0741 -7.1390 5.5905 18 6 0.8445 -7.7161 6.7798 19 8 0.9296 -6.7338 7.8141 20 6 -0.1262 -8.2283 4.5332 21 6 -0.8434 -7.6300 3.3209 22 6 1.1832 -4.8065 0.2997 23 6 1.8289 -3.6504 -0.0749 24 1 -0.4851 0.8401 0.0004 25 1 -0.1477 -1.4114 1.5751 26 1 -1.2804 -3.4955 2.2126 27 1 -1.6910 -5.8214 1.6783 28 1 -0.5126 -6.7662 0.7365 29 1 0.6951 -4.6369 3.3046 30 1 -0.8559 -5.0818 4.0555 31 1 0.9791 -5.1862 5.7123 32 1 1.8554 -6.3396 4.6767 33 1 -0.8968 -6.7746 5.9265 34 1 0.3244 -8.5966 7.1568 35 1 1.8485 -7.9959 6.4608 36 1 1.4066 -7.0315 8.6009 37 1 -0.7289 -9.0347 4.9512 38 1 0.8432 -8.6203 4.2257 39 1 -1.8188 -7.2512 3.6264 40 1 -0.9746 -8.3997 2.5604 41 1 1.5470 -5.7624 -0.0471 42 1 2.6976 -3.6975 -0.7149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342721259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:10 Heat of formation + Delta-G solvation = -63.311310 kcal Electronic energy + Delta-G solvation = -21179.547776 eV Core-core repulsion = 18122.328623 eV Total energy + Delta-G solvation = -3057.219153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53949 -39.21256 -37.63394 -35.84428 -34.51840 -32.08283 -31.56910 -31.13371 -29.01006 -27.02960 -24.93734 -24.02340 -22.94071 -22.47612 -21.43611 -20.58757 -19.22074 -18.18859 -17.22510 -16.86988 -16.31951 -16.11577 -15.85053 -15.62512 -15.26889 -15.14292 -14.76644 -14.31396 -14.01014 -13.95318 -13.81115 -13.42784 -13.19459 -13.13024 -12.85873 -12.63875 -12.53446 -12.34884 -12.11994 -12.02157 -11.61605 -11.47697 -11.29950 -11.27314 -11.13061 -10.98682 -10.76103 -9.37218 -9.28350 -9.04855 -8.64275 -6.33161 0.92891 1.15914 1.36990 1.48575 1.52553 2.20170 2.67055 3.17647 3.36301 3.77515 3.82009 3.89051 4.11387 4.26046 4.31713 4.34852 4.48251 4.50659 4.51616 4.60727 4.65605 4.68592 4.75595 4.84993 4.90093 4.95135 5.03929 5.05813 5.11797 5.16524 5.24687 5.29274 5.37962 5.47111 5.48957 5.71131 5.95914 6.10530 6.14392 6.28810 6.36860 6.39900 6.70352 6.94596 6.96491 7.04160 8.32739 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.003958 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.302678 B = 7072.450129 C = 7743.695358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.502 4.502 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.189 4.189 11 C -0.093 4.093 12 C -0.200 4.200 13 C 0.123 3.877 14 N -0.537 5.537 15 C 0.061 3.939 16 C -0.099 4.099 17 C -0.088 4.088 18 C 0.084 3.916 19 O -0.596 6.596 20 C -0.100 4.100 21 C 0.052 3.948 22 C -0.071 4.071 23 C -0.245 4.245 24 H 0.287 0.713 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.026 0.974 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.015 0.985 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.395 0.605 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 -13.916 10.833 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.079 3.921 10 C -0.209 4.209 11 C -0.112 4.112 12 C -0.201 4.201 13 C -0.004 4.004 14 N -0.262 5.262 15 C -0.068 4.068 16 C -0.137 4.137 17 C -0.107 4.107 18 C 0.007 3.993 19 O -0.405 6.405 20 C -0.137 4.137 21 C -0.076 4.076 22 C -0.090 4.090 23 C -0.264 4.264 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.245 0.755 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.832 -13.627 10.275 17.087 hybrid contribution -0.285 1.236 0.299 1.303 sum -1.117 -12.390 10.574 16.327 Atomic orbital electron populations 1.69887 1.09037 1.30417 1.35917 1.26749 0.95464 1.04503 0.91176 0.85183 0.79454 0.76245 0.78966 1.18178 1.18899 1.18942 1.19866 0.98300 0.92688 1.42322 0.90805 1.17948 0.91847 0.93097 0.89203 1.21217 1.00368 0.96858 1.02446 1.20685 0.98423 0.92831 0.99283 1.19261 1.00783 0.93475 1.06622 1.20707 0.94259 0.93536 0.91851 1.62096 1.50101 1.09745 1.04246 1.22017 0.98052 0.94070 0.92615 1.21490 0.98965 0.98104 0.95126 1.21208 0.98761 0.96125 0.94608 1.22222 0.99362 0.90379 0.87355 1.86466 1.80519 1.43430 1.30056 1.21522 1.01896 0.96925 0.93396 1.22187 0.94027 0.93820 0.97562 1.20633 0.94756 0.96723 0.96862 1.21170 1.04396 0.93205 1.07636 0.90215 0.88524 0.88887 0.95551 0.89874 0.92299 0.96722 0.92479 0.91937 0.92094 0.91641 0.92889 0.75499 0.88950 0.90721 0.95563 0.89304 0.86662 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.51 10.96 21.82 0.24 -44.27 16 2 C 0.04 1.85 5.14 85.26 0.44 2.29 16 3 Si 0.98 39.30 29.59 68.60 2.03 41.33 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.50 -28.04 9.05 23.46 0.21 -27.83 16 8 H 0.07 4.00 7.91 -2.91 -0.02 3.97 16 9 C 0.08 4.55 5.57 -21.29 -0.12 4.43 16 10 C -0.19 -10.31 8.70 22.73 0.20 -10.12 16 11 C -0.09 -4.44 7.75 22.22 0.17 -4.27 16 12 C -0.20 -8.61 4.15 -19.67 -0.08 -8.69 16 13 C 0.12 4.23 5.42 85.56 0.46 4.69 16 14 N -0.54 -16.81 4.80 -900.95 -4.32 -21.13 16 15 C 0.06 2.07 4.57 86.33 0.39 2.46 16 16 C -0.10 -2.86 5.25 30.65 0.16 -2.70 16 17 C -0.09 -1.98 2.49 -10.71 -0.03 -2.01 16 18 C 0.08 1.48 6.43 71.98 0.46 1.94 16 19 O -0.60 -11.86 13.26 -148.98 -1.98 -13.84 16 20 C -0.10 -1.91 5.38 30.65 0.16 -1.74 16 21 C 0.05 1.22 5.42 86.33 0.47 1.69 16 22 C -0.07 -3.19 9.67 22.22 0.21 -2.97 16 23 C -0.24 -12.41 9.80 22.73 0.22 -12.18 16 24 H 0.29 13.93 8.30 -92.70 -0.77 13.16 16 25 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 26 H 0.09 4.12 8.06 -2.91 -0.02 4.09 16 27 H 0.03 0.89 8.02 -2.38 -0.02 0.87 16 28 H 0.08 2.59 8.08 -2.39 -0.02 2.57 16 29 H 0.06 2.44 5.64 -2.39 -0.01 2.43 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 1.75 7.90 -2.39 -0.02 1.74 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.40 3.91 9.12 -74.06 -0.68 3.23 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 41 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 42 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -63.68 333.28 -0.36 -64.05 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.32 Total: 28.88 kcal Atomic # 6 Polarization: -58.36 SS G_CDS: 3.35 Total: -55.01 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -4.08 Total: -65.41 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -1.98 Total: -13.84 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -63.68 -0.36 -64.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342721259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.737 kcal (2) G-P(sol) polarization free energy of solvation -63.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds