Wall clock time and date at job start Mon Mar 30 2020 01:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48504 * 109.46882 * 269.99987 * 3 2 1 5 5 H 1.48500 * 109.47145 * 30.00074 * 3 2 1 6 6 H 1.48496 * 109.47158 * 150.00167 * 3 2 1 7 7 C 1.39941 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99971 * 197.85210 * 7 2 1 9 9 C 1.41393 * 119.99811 * 17.84893 * 7 2 1 10 10 C 1.40719 * 120.24722 * 24.37876 * 9 7 2 11 11 C 1.37615 * 119.74708 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24756 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.74907 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47495 * 89.99657 * 13 12 11 15 15 C 1.46840 * 111.00071 * 294.21230 * 14 13 12 16 16 C 1.53037 * 109.52466 * 174.15505 * 15 14 13 17 17 C 1.53117 * 109.27475 * 59.18060 * 16 15 14 18 18 C 1.53116 * 109.16455 * 302.34603 * 17 16 15 19 19 H 1.09005 * 109.50031 * 297.71651 * 18 17 16 20 20 C 1.52999 * 109.54197 * 177.61524 * 18 17 16 21 21 O 1.42904 * 109.46647 * 65.17271 * 20 18 17 22 22 C 1.46851 * 111.00199 * 169.99795 * 14 13 12 23 23 C 1.38631 * 120.50452 * 0.02562 * 12 11 10 24 24 C 1.37624 * 120.24969 * 359.97438 * 23 12 11 25 25 H 0.96999 * 119.99643 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.12108 * 0.05011 * 10 9 7 27 27 H 1.07999 * 119.87637 * 179.72267 * 11 10 9 28 28 H 1.09006 * 109.47297 * 210.00173 * 13 12 11 29 29 H 1.09004 * 109.47102 * 329.99234 * 13 12 11 30 30 H 1.09007 * 109.46382 * 294.17403 * 15 14 13 31 31 H 1.09001 * 109.46112 * 54.13806 * 15 14 13 32 32 H 1.08992 * 109.50295 * 299.24075 * 16 15 14 33 33 H 1.09004 * 109.53479 * 179.13853 * 16 15 14 34 34 H 1.08997 * 109.52425 * 182.43868 * 17 16 15 35 35 H 1.09008 * 109.57486 * 62.28200 * 17 16 15 36 36 H 1.08997 * 109.47261 * 185.17242 * 20 18 17 37 37 H 1.09000 * 109.46942 * 305.18030 * 20 18 17 38 38 H 0.96703 * 113.99687 * 180.02562 * 21 20 18 39 39 H 1.08994 * 109.46067 * 305.86273 * 22 14 13 40 40 H 1.09001 * 109.45424 * 65.83668 * 22 14 13 41 41 H 1.07996 * 119.87955 * 180.02562 * 23 12 11 42 42 H 1.07992 * 120.12931 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2873 9 6 1.3521 -2.4071 -0.3742 10 6 0.2206 -2.3627 -1.2097 11 6 -0.4102 -3.5323 -1.5677 12 6 0.0648 -4.7509 -1.1079 13 6 -0.6349 -6.0247 -1.5064 14 7 -0.0445 -6.5397 -2.7490 15 6 -0.3014 -5.6280 -3.8711 16 6 0.4481 -6.1197 -5.1115 17 6 -0.0244 -7.5338 -5.4600 18 6 0.2098 -8.4526 -4.2578 19 1 1.2769 -8.5032 -4.0410 20 6 -0.3139 -9.8547 -4.5755 21 8 0.4578 -10.4223 -5.6359 22 6 -0.5326 -7.8933 -3.0421 23 6 1.1780 -4.8065 -0.2835 24 6 1.8247 -3.6497 0.0873 25 1 -0.4849 0.8401 0.0004 26 1 -0.1510 -1.4145 -1.5689 27 1 -1.2814 -3.5003 -2.2051 28 1 -0.5197 -6.7654 -0.7151 29 1 -1.6945 -5.8232 -1.6639 30 1 -1.3709 -5.6012 -4.0798 31 1 0.0430 -4.6269 -3.6118 32 1 1.5187 -6.1336 -4.9081 33 1 0.2452 -5.4516 -5.9486 34 1 0.5376 -7.9048 -6.3170 35 1 -1.0871 -7.5145 -5.7021 36 1 -0.2307 -10.4831 -3.6889 37 1 -1.3586 -9.7919 -4.8799 38 1 0.1806 -11.3130 -5.8908 39 1 -0.3562 -8.5374 -2.1807 40 1 -1.6010 -7.8558 -3.2549 41 1 1.5396 -5.7613 0.0684 42 1 2.6919 -3.6953 0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342766778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:22 Heat of formation + Delta-G solvation = -46.311045 kcal Electronic energy + Delta-G solvation = -21055.314422 eV Core-core repulsion = 17998.832456 eV Total energy + Delta-G solvation = -3056.481966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.24882 -37.60130 -36.59988 -34.17168 -32.97376 -31.36617 -30.02483 -29.23405 -26.79124 -25.71929 -24.14034 -22.54245 -21.52948 -20.78490 -19.64948 -19.55450 -17.47803 -17.26251 -15.69621 -15.31697 -15.25616 -14.68801 -14.55498 -14.26404 -13.89629 -13.50612 -13.31406 -13.18786 -12.80039 -12.49740 -12.35822 -11.96631 -11.73663 -11.60802 -11.32971 -11.02721 -10.99780 -10.87974 -10.67411 -10.47695 -10.38405 -10.31760 -10.13468 -9.98333 -9.51555 -9.34181 -9.10504 -7.91120 -7.39104 -7.25733 -6.74175 -4.32160 2.75453 3.07785 3.11841 3.11901 3.19441 3.93552 3.95043 4.44297 4.67544 4.79750 4.91719 5.02600 5.24538 5.35748 5.46198 5.52941 5.53697 5.70290 5.74370 5.77269 5.83086 5.97307 6.00980 6.12594 6.22486 6.28272 6.29832 6.40514 6.44922 6.51520 6.55934 6.97626 7.10263 7.29412 7.40936 7.41922 7.51572 7.53911 7.65388 7.92509 8.08771 8.17705 8.33727 8.67121 8.92745 9.01164 10.20374 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037840 B = 0.003452 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.777387 B = 8108.609487 C = 8308.630575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.166 4.166 11 C -0.094 4.094 12 C -0.207 4.207 13 C 0.121 3.879 14 N -0.530 5.530 15 C 0.054 3.946 16 C -0.117 4.117 17 C -0.109 4.109 18 C -0.085 4.085 19 H 0.085 0.915 20 C 0.082 3.918 21 O -0.572 6.572 22 C 0.062 3.938 23 C -0.069 4.069 24 C -0.228 4.228 25 H 0.280 0.720 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.023 0.977 30 H 0.022 0.978 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.376 0.624 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.086 0.914 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -13.140 -7.974 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.185 4.185 11 C -0.113 4.113 12 C -0.208 4.208 13 C -0.005 4.005 14 N -0.254 5.254 15 C -0.073 4.073 16 C -0.155 4.155 17 C -0.146 4.146 18 C -0.103 4.103 19 H 0.104 0.896 20 C 0.004 3.996 21 O -0.376 6.376 22 C -0.066 4.066 23 C -0.088 4.088 24 C -0.248 4.248 25 H 0.090 0.910 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.222 0.778 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.105 0.895 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.527 -12.423 -7.832 14.902 hybrid contribution -0.934 0.287 -0.041 0.978 sum -3.461 -12.136 -7.873 14.874 Atomic orbital electron populations 1.69834 1.07568 1.29099 1.35468 1.25903 0.94705 1.01267 0.92262 0.86333 0.80521 0.80676 0.79305 1.19293 1.20380 1.18634 1.19605 0.98144 0.91317 1.40228 0.90500 1.17618 0.91046 0.92007 0.88351 1.21273 0.99403 0.96612 1.01211 1.20507 0.98400 0.92878 0.99553 1.18825 1.01602 0.92234 1.08183 1.20719 0.94451 0.95305 0.90037 1.61971 1.59258 1.00821 1.03340 1.22138 0.96920 0.98103 0.90185 1.21600 1.01290 0.95677 0.96946 1.21545 1.00530 0.95114 0.97438 1.21150 1.01829 0.92143 0.95224 0.89613 1.22194 0.93735 0.94538 0.89181 1.86500 1.60643 1.35084 1.55405 1.21966 0.95977 0.91695 0.96962 1.20313 0.94895 0.96231 0.97342 1.20967 1.03775 0.92962 1.07061 0.90961 0.86592 0.89970 0.91778 0.95911 0.95954 0.89114 0.91087 0.91894 0.91552 0.92901 0.93684 0.93939 0.77808 0.91099 0.95537 0.89540 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.63 10.95 55.55 0.61 -20.02 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 8 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 9 C 0.11 3.01 5.58 -106.82 -0.60 2.42 16 10 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 11 C -0.09 -2.18 7.83 -39.66 -0.31 -2.49 16 12 C -0.21 -4.48 4.91 -104.33 -0.51 -4.99 16 13 C 0.12 2.16 5.11 -4.98 -0.03 2.13 16 14 N -0.53 -8.69 4.65 -236.11 -1.10 -9.79 16 15 C 0.05 0.87 5.15 -3.84 -0.02 0.85 16 16 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 17 C -0.11 -1.35 5.16 -26.61 -0.14 -1.49 16 18 C -0.08 -1.04 2.59 -90.54 -0.23 -1.28 16 19 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 20 C 0.08 0.80 6.43 37.16 0.24 1.04 16 21 O -0.57 -5.73 13.25 -35.23 -0.47 -6.19 16 22 C 0.06 0.83 4.74 -3.83 -0.02 0.81 16 23 C -0.07 -1.56 9.67 -39.66 -0.38 -1.95 16 24 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 25 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 26 H 0.12 3.12 6.16 -52.49 -0.32 2.79 16 27 H 0.08 1.74 7.96 -52.49 -0.42 1.32 16 28 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 29 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 1.69 5.74 -51.93 -0.30 1.39 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 35 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.38 1.93 9.12 45.56 0.42 2.35 16 39 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -28.50 334.05 -10.32 -38.82 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.06 Total: 6.72 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -3.31 Total: -28.35 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: -0.49 Total: -29.81 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.47 Total: -6.19 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.50 -10.32 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342766778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.493 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds