Wall clock time and date at job start Mon Mar 30 2020 01:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48504 * 109.46882 * 269.99987 * 3 2 1 5 5 H 1.48500 * 109.47145 * 30.00074 * 3 2 1 6 6 H 1.48496 * 109.47158 * 150.00167 * 3 2 1 7 7 C 1.39941 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99971 * 197.85210 * 7 2 1 9 9 C 1.41393 * 119.99811 * 17.84893 * 7 2 1 10 10 C 1.40719 * 120.24722 * 24.37876 * 9 7 2 11 11 C 1.37615 * 119.74708 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24756 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.74907 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47495 * 89.99657 * 13 12 11 15 15 C 1.46840 * 111.00071 * 294.21230 * 14 13 12 16 16 C 1.53037 * 109.52466 * 174.15505 * 15 14 13 17 17 C 1.53117 * 109.27475 * 59.18060 * 16 15 14 18 18 C 1.53116 * 109.16455 * 302.34603 * 17 16 15 19 19 H 1.09005 * 109.50031 * 297.71651 * 18 17 16 20 20 C 1.52999 * 109.54197 * 177.61524 * 18 17 16 21 21 O 1.42904 * 109.46647 * 65.17271 * 20 18 17 22 22 C 1.46851 * 111.00199 * 169.99795 * 14 13 12 23 23 C 1.38631 * 120.50452 * 0.02562 * 12 11 10 24 24 C 1.37624 * 120.24969 * 359.97438 * 23 12 11 25 25 H 0.96999 * 119.99643 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.12108 * 0.05011 * 10 9 7 27 27 H 1.07999 * 119.87637 * 179.72267 * 11 10 9 28 28 H 1.09006 * 109.47297 * 210.00173 * 13 12 11 29 29 H 1.09004 * 109.47102 * 329.99234 * 13 12 11 30 30 H 1.09007 * 109.46382 * 294.17403 * 15 14 13 31 31 H 1.09001 * 109.46112 * 54.13806 * 15 14 13 32 32 H 1.08992 * 109.50295 * 299.24075 * 16 15 14 33 33 H 1.09004 * 109.53479 * 179.13853 * 16 15 14 34 34 H 1.08997 * 109.52425 * 182.43868 * 17 16 15 35 35 H 1.09008 * 109.57486 * 62.28200 * 17 16 15 36 36 H 1.08997 * 109.47261 * 185.17242 * 20 18 17 37 37 H 1.09000 * 109.46942 * 305.18030 * 20 18 17 38 38 H 0.96703 * 113.99687 * 180.02562 * 21 20 18 39 39 H 1.08994 * 109.46067 * 305.86273 * 22 14 13 40 40 H 1.09001 * 109.45424 * 65.83668 * 22 14 13 41 41 H 1.07996 * 119.87955 * 180.02562 * 23 12 11 42 42 H 1.07992 * 120.12931 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2873 9 6 1.3521 -2.4071 -0.3742 10 6 0.2206 -2.3627 -1.2097 11 6 -0.4102 -3.5323 -1.5677 12 6 0.0648 -4.7509 -1.1079 13 6 -0.6349 -6.0247 -1.5064 14 7 -0.0445 -6.5397 -2.7490 15 6 -0.3014 -5.6280 -3.8711 16 6 0.4481 -6.1197 -5.1115 17 6 -0.0244 -7.5338 -5.4600 18 6 0.2098 -8.4526 -4.2578 19 1 1.2769 -8.5032 -4.0410 20 6 -0.3139 -9.8547 -4.5755 21 8 0.4578 -10.4223 -5.6359 22 6 -0.5326 -7.8933 -3.0421 23 6 1.1780 -4.8065 -0.2835 24 6 1.8247 -3.6497 0.0873 25 1 -0.4849 0.8401 0.0004 26 1 -0.1510 -1.4145 -1.5689 27 1 -1.2814 -3.5003 -2.2051 28 1 -0.5197 -6.7654 -0.7151 29 1 -1.6945 -5.8232 -1.6639 30 1 -1.3709 -5.6012 -4.0798 31 1 0.0430 -4.6269 -3.6118 32 1 1.5187 -6.1336 -4.9081 33 1 0.2452 -5.4516 -5.9486 34 1 0.5376 -7.9048 -6.3170 35 1 -1.0871 -7.5145 -5.7021 36 1 -0.2307 -10.4831 -3.6889 37 1 -1.3586 -9.7919 -4.8799 38 1 0.1806 -11.3130 -5.8908 39 1 -0.3562 -8.5374 -2.1807 40 1 -1.6010 -7.8558 -3.2549 41 1 1.5396 -5.7613 0.0684 42 1 2.6919 -3.6953 0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342766778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:21 Heat of formation + Delta-G solvation = -64.179943 kcal Electronic energy + Delta-G solvation = -21056.089275 eV Core-core repulsion = 17998.832456 eV Total energy + Delta-G solvation = -3057.256820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47012 -39.21614 -37.57213 -35.82131 -34.42024 -32.43214 -31.75668 -31.11674 -28.44736 -26.68432 -25.70297 -23.77779 -23.05985 -22.39973 -21.33234 -20.61640 -19.20391 -18.21727 -17.17511 -16.86847 -16.30150 -16.08870 -15.87015 -15.63368 -15.28445 -15.07107 -14.67156 -14.39758 -14.18893 -13.83502 -13.78122 -13.48792 -13.38169 -12.94674 -12.85309 -12.64396 -12.53013 -12.34269 -12.07419 -11.97459 -11.62678 -11.50042 -11.30881 -11.24535 -11.09727 -10.98379 -10.77484 -9.35740 -9.22364 -9.06424 -8.62735 -6.31643 0.95618 1.18281 1.37416 1.50511 1.51407 2.20982 2.66263 3.04309 3.53537 3.76785 3.84891 3.92460 4.04292 4.26173 4.32924 4.34299 4.48954 4.54778 4.55685 4.59079 4.59812 4.67671 4.70618 4.79156 4.83096 4.93575 5.05844 5.07666 5.12216 5.17746 5.19711 5.37997 5.39988 5.47954 5.50566 5.73262 5.98566 6.12372 6.16258 6.29718 6.37217 6.42268 6.72654 6.96445 6.97097 7.06612 8.34261 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037840 B = 0.003452 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.777387 B = 8108.609487 C = 8308.630575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.072 0.928 9 C 0.080 3.920 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.194 4.194 13 C 0.126 3.874 14 N -0.543 5.543 15 C 0.056 3.944 16 C -0.114 4.114 17 C -0.102 4.102 18 C -0.084 4.084 19 H 0.064 0.936 20 C 0.087 3.913 21 O -0.592 6.592 22 C 0.064 3.936 23 C -0.073 4.073 24 C -0.245 4.245 25 H 0.287 0.713 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.397 0.603 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.113 0.887 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 -14.897 -8.697 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.090 0.910 9 C 0.077 3.923 10 C -0.209 4.209 11 C -0.112 4.112 12 C -0.195 4.195 13 C -0.001 4.001 14 N -0.268 5.268 15 C -0.072 4.072 16 C -0.152 4.152 17 C -0.140 4.140 18 C -0.103 4.103 19 H 0.083 0.917 20 C 0.009 3.991 21 O -0.400 6.400 22 C -0.063 4.063 23 C -0.092 4.092 24 C -0.265 4.265 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.246 0.754 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.131 0.869 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.292 -14.221 -8.564 16.924 hybrid contribution -0.744 0.660 0.131 1.003 sum -4.036 -13.561 -8.433 16.471 Atomic orbital electron populations 1.69883 1.08946 1.30409 1.36017 1.26735 0.95498 1.04428 0.91252 0.85223 0.79084 0.76019 0.79481 1.18748 1.19130 1.18311 1.19825 0.98270 0.92701 1.42516 0.90992 1.17951 0.91974 0.93008 0.89333 1.21232 1.00274 0.96979 1.02415 1.20706 0.98585 0.92660 0.99276 1.19272 1.00613 0.93578 1.06046 1.20648 0.94279 0.93699 0.91427 1.61866 1.59824 1.02329 1.02782 1.22069 0.97497 0.96670 0.90935 1.21566 0.99994 0.97222 0.96410 1.21490 1.01076 0.93819 0.97600 1.21111 1.00581 0.93922 0.94678 0.91727 1.22099 0.94101 0.93027 0.89886 1.86440 1.61204 1.36887 1.55485 1.22025 0.96659 0.89706 0.97946 1.20628 0.94868 0.96564 0.97093 1.21167 1.04375 0.93352 1.07575 0.90229 0.88415 0.88304 0.90018 0.95126 0.95122 0.92278 0.92752 0.90829 0.91499 0.91767 0.92293 0.92448 0.75353 0.89836 0.94261 0.86908 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.27 10.95 21.83 0.24 -44.03 16 2 C 0.04 1.83 5.14 85.26 0.44 2.27 16 3 Si 0.98 39.28 29.59 68.60 2.03 41.31 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.50 -28.14 9.05 23.46 0.21 -27.92 16 8 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 9 C 0.08 4.45 5.58 -21.29 -0.12 4.33 16 10 C -0.19 -10.22 8.70 22.73 0.20 -10.02 16 11 C -0.09 -4.36 7.83 22.22 0.17 -4.18 16 12 C -0.19 -8.23 4.91 -19.68 -0.10 -8.32 16 13 C 0.13 4.19 5.11 85.56 0.44 4.63 16 14 N -0.54 -16.69 4.65 -900.92 -4.19 -20.88 16 15 C 0.06 1.74 5.15 86.33 0.44 2.18 16 16 C -0.11 -3.05 6.09 30.65 0.19 -2.87 16 17 C -0.10 -2.31 5.16 30.67 0.16 -2.16 16 18 C -0.08 -1.85 2.59 -10.74 -0.03 -1.88 16 19 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 20 C 0.09 1.41 6.43 71.98 0.46 1.87 16 21 O -0.59 -10.16 13.25 -148.98 -1.97 -12.13 16 22 C 0.06 1.50 4.74 86.32 0.41 1.91 16 23 C -0.07 -3.27 9.67 22.22 0.21 -3.05 16 24 C -0.25 -12.49 9.80 22.73 0.22 -12.27 16 25 H 0.29 13.87 8.30 -92.71 -0.77 13.11 16 26 H 0.10 5.53 6.16 -2.91 -0.02 5.52 16 27 H 0.10 4.18 7.96 -2.91 -0.02 4.16 16 28 H 0.08 2.45 7.93 -2.38 -0.02 2.43 16 29 H 0.03 0.98 8.06 -2.38 -0.02 0.96 16 30 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 2.20 5.74 -2.39 -0.01 2.18 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.07 1.52 7.90 -2.39 -0.02 1.51 16 35 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.40 2.87 9.12 -74.06 -0.68 2.20 16 39 H 0.08 1.75 8.01 -2.39 -0.02 1.73 16 40 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -63.11 334.05 -0.26 -63.37 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.32 Total: 27.84 kcal Atomic # 6 Polarization: -58.80 SS G_CDS: 3.32 Total: -55.48 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -3.95 Total: -64.91 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.97 Total: -12.13 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -63.11 -0.26 -63.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342766778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.810 kcal (2) G-P(sol) polarization free energy of solvation -63.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds