Wall clock time and date at job start Mon Mar 30 2020 01:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 120.00019 * 2 1 4 4 C 1.38227 * 120.00046 * 180.02562 * 3 2 1 5 5 C 1.38236 * 120.00035 * 0.25039 * 4 3 2 6 6 C 1.50705 * 120.00308 * 179.73178 * 5 4 3 7 7 C 1.53000 * 109.46516 * 307.49972 * 6 5 4 8 8 C 1.52999 * 109.47299 * 67.49420 * 6 5 4 9 9 C 1.50694 * 109.47120 * 187.50163 * 6 5 4 10 10 O 1.21288 * 119.99976 * 246.25452 * 9 6 5 11 11 N 1.34770 * 120.00431 * 66.25579 * 9 6 5 12 12 C 1.46498 * 119.99942 * 354.75824 * 11 9 6 13 13 C 1.46503 * 120.00358 * 174.75154 * 11 9 6 14 14 C 1.50702 * 109.46815 * 90.00113 * 13 11 9 15 15 H 1.08003 * 120.00077 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99865 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99901 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99842 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47221 * 90.00282 * 18 16 14 20 20 H 1.48501 * 109.46964 * 209.99773 * 18 16 14 21 21 H 1.48497 * 109.47430 * 329.99765 * 18 16 14 22 22 C 1.38236 * 119.99878 * 359.48914 * 5 4 3 23 23 C 1.38234 * 119.99669 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46974 * 90.00032 * 1 2 3 25 25 H 1.08994 * 109.47366 * 210.00000 * 1 2 3 26 26 H 1.08999 * 109.47148 * 330.00428 * 1 2 3 27 27 H 1.08000 * 119.99865 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.00240 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47343 * 68.76037 * 7 6 5 30 30 H 1.09008 * 109.47010 * 188.75467 * 7 6 5 31 31 H 1.08994 * 109.47363 * 308.75398 * 7 6 5 32 32 H 1.09010 * 109.46860 * 60.00671 * 8 6 5 33 33 H 1.08996 * 109.47241 * 180.02562 * 8 6 5 34 34 H 1.08997 * 109.47541 * 300.00495 * 8 6 5 35 35 H 1.08997 * 109.47553 * 92.96741 * 12 11 9 36 36 H 1.09001 * 109.47160 * 212.97310 * 12 11 9 37 37 H 1.09007 * 109.46897 * 332.96906 * 12 11 9 38 38 H 1.08998 * 109.47356 * 210.00376 * 13 11 9 39 39 H 1.09005 * 109.46720 * 330.00440 * 13 11 9 40 40 H 0.97007 * 119.99917 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.00069 * 180.25221 * 22 5 4 42 42 H 1.07997 * 120.00705 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0063 6 6 5.7787 0.0000 -0.0130 7 6 6.2835 0.8807 -1.1577 8 6 6.2947 0.5491 1.3186 9 6 6.2801 -1.4082 -0.2039 10 8 6.8850 -1.9629 0.6892 11 7 6.0565 -2.0514 -1.3669 12 6 5.2287 -1.4270 -2.4018 13 6 6.6414 -3.3748 -1.5964 14 6 5.6855 -4.4365 -1.1166 15 1 4.7370 -4.1537 -0.6844 16 6 6.0219 -5.7689 -1.2294 17 7 5.1879 -6.6953 -0.8102 18 14 7.6627 -6.2579 -1.9763 19 1 8.6876 -6.3461 -0.9052 20 1 7.5292 -7.5779 -2.6434 21 1 8.0759 -5.2387 -2.9741 22 6 3.5805 -1.1972 -0.0009 23 6 2.1981 -1.1972 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 6.0546 1.9242 -0.9415 30 1 7.3618 0.7593 -1.2613 31 1 5.7940 0.5861 -2.0859 32 1 5.9350 -0.0784 2.1342 33 1 7.3846 0.5495 1.3136 34 1 5.9320 1.5676 1.4566 35 1 5.8658 -0.8756 -3.0932 36 1 4.6842 -2.1987 -2.9461 37 1 4.5199 -0.7423 -1.9360 38 1 6.8291 -3.5094 -2.6616 39 1 7.5804 -3.4570 -1.0488 40 1 5.4247 -7.6327 -0.8893 41 1 4.1205 -2.1324 -0.0012 42 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343395409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:49 Heat of formation + Delta-G solvation = -6.381658 kcal Electronic energy + Delta-G solvation = -22245.356280 eV Core-core repulsion = 19190.605782 eV Total energy + Delta-G solvation = -3054.750498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63696 -38.45784 -35.24900 -35.00536 -32.45658 -31.58003 -30.74815 -28.62797 -26.97827 -26.58045 -26.00405 -23.80116 -22.09946 -21.79326 -20.28140 -18.24887 -17.11194 -16.72504 -15.60387 -15.59590 -14.94160 -14.57167 -14.48766 -13.92929 -13.83295 -13.49655 -13.39838 -13.17296 -12.99446 -12.40798 -12.24127 -12.18504 -12.11646 -12.00054 -11.74325 -11.60970 -11.55125 -11.38424 -10.93759 -10.75898 -10.71486 -10.53581 -10.47882 -10.12966 -9.52329 -8.88624 -8.69992 -8.57842 -8.26401 -7.65320 -6.07772 -4.06101 1.45940 1.60158 3.29708 3.32903 3.35645 3.37552 3.85661 3.89520 4.40370 4.76797 4.77229 4.99754 5.08357 5.18814 5.21440 5.24535 5.35302 5.43520 5.59711 5.62741 5.70340 5.74487 5.79155 5.85250 5.89673 5.93221 5.98945 6.03445 6.13895 6.24584 6.29206 6.31043 6.46134 6.61788 6.71195 6.80400 6.82756 6.94814 7.19144 7.36994 7.62221 8.27252 8.47448 8.93305 9.00429 9.52772 11.05493 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.006153 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.080512 B = 4549.589551 C = 5439.861481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.110 4.110 5 C -0.075 4.075 6 C -0.044 4.044 7 C -0.149 4.149 8 C -0.120 4.120 9 C 0.517 3.483 10 O -0.535 6.535 11 N -0.593 5.593 12 C 0.068 3.932 13 C 0.215 3.785 14 C -0.526 4.526 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.103 4.103 23 C -0.114 4.114 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.140 0.860 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 17.872 -1.835 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.128 4.128 5 C -0.075 4.075 6 C -0.047 4.047 7 C -0.206 4.206 8 C -0.177 4.177 9 C 0.304 3.696 10 O -0.411 6.411 11 N -0.325 5.325 12 C -0.075 4.075 13 C 0.094 3.906 14 C -0.564 4.564 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.703 3.297 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.121 4.121 23 C -0.132 4.132 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.157 0.843 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.776 17.349 -1.366 18.046 hybrid contribution 0.745 -0.540 -0.446 1.022 sum -4.031 16.809 -1.812 17.380 Atomic orbital electron populations 1.20769 0.91521 1.02496 1.02120 1.19913 0.95869 0.93258 1.00173 1.20887 0.93939 0.97216 1.02354 1.20837 0.93928 0.97121 1.00935 1.19500 0.93533 0.93552 1.00920 1.19798 0.92149 0.94537 0.98237 1.22177 1.01680 0.98866 0.97920 1.21625 1.01305 0.99807 0.94986 1.20095 0.80286 0.86866 0.82398 1.90676 1.42047 1.67881 1.40536 1.47781 1.49907 1.19448 1.15355 1.22149 0.94946 0.98777 0.91628 1.19672 0.95092 0.79464 0.96340 1.21307 1.04400 0.89732 1.40993 0.90713 1.24850 0.96776 0.96365 0.95004 1.69895 1.36105 1.00537 1.47045 0.86857 0.84784 0.78133 0.79946 1.19954 1.21113 1.19113 1.21604 0.94668 0.98733 0.97063 1.21079 0.94110 0.97610 1.00355 0.91355 0.91590 0.91891 0.86427 0.86200 0.91863 0.92029 0.90633 0.91692 0.91900 0.92420 0.93637 0.91003 0.90434 0.95260 0.94763 0.92609 0.84272 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.01 0.36 -0.74 16 2 C -0.09 -1.17 5.88 -104.62 -0.62 -1.79 16 3 C -0.13 -1.48 9.70 -39.59 -0.38 -1.86 16 4 C -0.11 -1.36 8.84 -39.59 -0.35 -1.71 16 5 C -0.07 -1.12 3.10 -104.62 -0.32 -1.45 16 6 C -0.04 -0.68 0.59 -156.81 -0.09 -0.78 16 7 C -0.15 -1.85 7.61 37.16 0.28 -1.57 16 8 C -0.12 -1.74 7.66 37.16 0.28 -1.46 16 9 C 0.52 10.73 4.87 -10.99 -0.05 10.67 16 10 O -0.53 -13.41 15.62 5.55 0.09 -13.32 16 11 N -0.59 -12.34 2.22 -182.95 -0.41 -12.75 16 12 C 0.07 1.12 7.91 59.85 0.47 1.60 16 13 C 0.21 5.29 4.20 -5.19 -0.02 5.27 16 14 C -0.53 -15.04 9.94 -34.44 -0.34 -15.39 16 15 H 0.07 2.32 7.38 -52.48 -0.39 1.93 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 18 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 19 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 C -0.10 -1.78 7.22 -39.58 -0.29 -2.07 16 23 C -0.11 -1.73 9.70 -39.58 -0.38 -2.12 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.12 1.20 7.27 -52.48 -0.38 0.82 16 29 H 0.06 0.62 7.35 -51.93 -0.38 0.24 16 30 H 0.06 0.77 8.12 -51.92 -0.42 0.35 16 31 H 0.07 0.90 4.51 -51.93 -0.23 0.67 16 32 H 0.06 1.06 8.03 -51.92 -0.42 0.65 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 35 H 0.05 0.63 7.11 -51.93 -0.37 0.26 16 36 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 37 H 0.08 1.18 3.40 -51.93 -0.18 1.00 16 38 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 39 H 0.03 0.90 6.93 -51.93 -0.36 0.54 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.14 2.98 5.33 -52.49 -0.28 2.70 16 42 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -33.16 328.15 -7.13 -40.28 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.31 Total: 2.06 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.55 Total: -11.37 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.37 Total: -39.62 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.16 -7.13 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343395409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.903 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds