Wall clock time and date at job start Mon Mar 30 2020 01:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38234 * 120.00019 * 2 1 4 4 C 1.38227 * 120.00046 * 180.02562 * 3 2 1 5 5 C 1.38236 * 120.00035 * 0.25039 * 4 3 2 6 6 C 1.50705 * 120.00308 * 179.73178 * 5 4 3 7 7 C 1.53000 * 109.46516 * 307.49972 * 6 5 4 8 8 C 1.52999 * 109.47299 * 67.49420 * 6 5 4 9 9 C 1.50694 * 109.47120 * 187.50163 * 6 5 4 10 10 O 1.21288 * 119.99976 * 246.25452 * 9 6 5 11 11 N 1.34770 * 120.00431 * 66.25579 * 9 6 5 12 12 C 1.46498 * 119.99942 * 354.75824 * 11 9 6 13 13 C 1.46503 * 120.00358 * 174.75154 * 11 9 6 14 14 C 1.50702 * 109.46815 * 90.00113 * 13 11 9 15 15 H 1.08003 * 120.00077 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99865 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99901 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99842 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47221 * 90.00282 * 18 16 14 20 20 H 1.48501 * 109.46964 * 209.99773 * 18 16 14 21 21 H 1.48497 * 109.47430 * 329.99765 * 18 16 14 22 22 C 1.38236 * 119.99878 * 359.48914 * 5 4 3 23 23 C 1.38234 * 119.99669 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46974 * 90.00032 * 1 2 3 25 25 H 1.08994 * 109.47366 * 210.00000 * 1 2 3 26 26 H 1.08999 * 109.47148 * 330.00428 * 1 2 3 27 27 H 1.08000 * 119.99865 * 359.97438 * 3 2 1 28 28 H 1.08006 * 120.00240 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47343 * 68.76037 * 7 6 5 30 30 H 1.09008 * 109.47010 * 188.75467 * 7 6 5 31 31 H 1.08994 * 109.47363 * 308.75398 * 7 6 5 32 32 H 1.09010 * 109.46860 * 60.00671 * 8 6 5 33 33 H 1.08996 * 109.47241 * 180.02562 * 8 6 5 34 34 H 1.08997 * 109.47541 * 300.00495 * 8 6 5 35 35 H 1.08997 * 109.47553 * 92.96741 * 12 11 9 36 36 H 1.09001 * 109.47160 * 212.97310 * 12 11 9 37 37 H 1.09007 * 109.46897 * 332.96906 * 12 11 9 38 38 H 1.08998 * 109.47356 * 210.00376 * 13 11 9 39 39 H 1.09005 * 109.46720 * 330.00440 * 13 11 9 40 40 H 0.97007 * 119.99917 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.00069 * 180.25221 * 22 5 4 42 42 H 1.07997 * 120.00705 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0063 6 6 5.7787 0.0000 -0.0130 7 6 6.2835 0.8807 -1.1577 8 6 6.2947 0.5491 1.3186 9 6 6.2801 -1.4082 -0.2039 10 8 6.8850 -1.9629 0.6892 11 7 6.0565 -2.0514 -1.3669 12 6 5.2287 -1.4270 -2.4018 13 6 6.6414 -3.3748 -1.5964 14 6 5.6855 -4.4365 -1.1166 15 1 4.7370 -4.1537 -0.6844 16 6 6.0219 -5.7689 -1.2294 17 7 5.1879 -6.6953 -0.8102 18 14 7.6627 -6.2579 -1.9763 19 1 8.6876 -6.3461 -0.9052 20 1 7.5292 -7.5779 -2.6434 21 1 8.0759 -5.2387 -2.9741 22 6 3.5805 -1.1972 -0.0009 23 6 2.1981 -1.1972 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 -0.0010 29 1 6.0546 1.9242 -0.9415 30 1 7.3618 0.7593 -1.2613 31 1 5.7940 0.5861 -2.0859 32 1 5.9350 -0.0784 2.1342 33 1 7.3846 0.5495 1.3136 34 1 5.9320 1.5676 1.4566 35 1 5.8658 -0.8756 -3.0932 36 1 4.6842 -2.1987 -2.9461 37 1 4.5199 -0.7423 -1.9360 38 1 6.8291 -3.5094 -2.6616 39 1 7.5804 -3.4570 -1.0488 40 1 5.4247 -7.6327 -0.8893 41 1 4.1205 -2.1324 -0.0012 42 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343395409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:49 Heat of formation + Delta-G solvation = -27.061730 kcal Electronic energy + Delta-G solvation = -22246.253035 eV Core-core repulsion = 19190.605782 eV Total energy + Delta-G solvation = -3055.647253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98872 -39.77802 -36.76944 -36.53462 -34.62604 -32.60582 -31.85807 -30.52832 -28.19058 -27.58935 -27.42163 -25.43648 -23.51047 -23.03647 -21.62106 -19.72702 -19.20768 -18.19708 -17.29706 -16.93225 -16.36838 -15.98717 -15.80998 -15.36551 -15.05430 -14.89564 -14.66177 -14.45992 -14.22367 -14.14732 -13.73579 -13.62518 -13.21424 -13.13652 -13.01576 -12.98262 -12.75851 -12.68803 -12.54013 -12.45612 -12.06160 -11.93769 -11.85170 -11.72563 -11.59076 -10.85826 -10.53402 -9.80431 -9.42747 -9.31054 -8.36278 -6.41158 0.38406 0.50063 1.29000 1.33425 1.41928 1.73821 2.27877 2.29934 2.81245 2.97649 3.47522 3.63572 3.99843 4.08899 4.10135 4.11193 4.20462 4.37569 4.50668 4.55765 4.58344 4.73532 4.74990 4.81562 4.82717 4.86425 4.87456 4.88608 4.95898 4.98963 5.05134 5.17043 5.21874 5.31493 5.34906 5.42473 5.54621 5.60087 5.68819 5.74108 6.12948 6.21488 6.59865 6.66157 7.18625 7.38075 8.80784 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.006153 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.080512 B = 4549.589551 C = 5439.861481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.114 4.114 4 C -0.096 4.096 5 C -0.082 4.082 6 C -0.036 4.036 7 C -0.145 4.145 8 C -0.117 4.117 9 C 0.508 3.492 10 O -0.594 6.594 11 N -0.598 5.598 12 C 0.067 3.933 13 C 0.223 3.777 14 C -0.533 4.533 15 H 0.027 0.973 16 C 0.010 3.990 17 N -0.946 5.946 18 Si 0.949 3.051 19 H -0.277 1.277 20 H -0.273 1.273 21 H -0.238 1.238 22 C -0.133 4.133 23 C -0.135 4.135 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.017 0.983 40 H 0.268 0.732 41 H 0.082 0.918 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 22.243 -3.509 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.132 4.132 4 C -0.113 4.113 5 C -0.082 4.082 6 C -0.039 4.039 7 C -0.202 4.202 8 C -0.174 4.174 9 C 0.297 3.703 10 O -0.475 6.475 11 N -0.329 5.329 12 C -0.074 4.074 13 C 0.100 3.900 14 C -0.571 4.571 15 H 0.045 0.955 16 C -0.188 4.188 17 N -0.586 5.586 18 Si 0.772 3.228 19 H -0.202 1.202 20 H -0.199 1.199 21 H -0.161 1.161 22 C -0.152 4.152 23 C -0.153 4.153 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.178 0.822 28 H 0.178 0.822 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.794 21.759 -3.077 22.493 hybrid contribution 0.581 -1.891 0.164 1.985 sum -4.214 19.868 -2.914 20.518 Atomic orbital electron populations 1.20835 0.89292 1.03502 1.03191 1.20238 0.97512 0.92502 0.98627 1.21373 0.93888 0.98107 0.99798 1.21203 0.94396 0.96999 0.98750 1.19453 0.93012 0.93754 1.01974 1.19822 0.92594 0.91150 1.00338 1.22213 1.01433 1.00172 0.96400 1.21651 1.01089 1.01388 0.93319 1.21212 0.78971 0.88979 0.81176 1.90626 1.44834 1.69832 1.42240 1.47829 1.50051 1.18214 1.16758 1.22376 0.95339 0.98655 0.91076 1.19357 0.93360 0.80579 0.96682 1.21530 1.03519 0.91458 1.40641 0.95497 1.25874 1.01244 0.96175 0.95528 1.70058 1.38648 1.01105 1.48774 0.85694 0.78839 0.78788 0.79495 1.20240 1.19852 1.16087 1.21234 0.95478 0.97667 1.00779 1.21059 0.93497 0.98657 1.02104 0.90132 0.92205 0.89328 0.82234 0.82180 0.87798 0.92281 0.90090 0.94868 0.92324 0.88077 0.89843 0.92501 0.88878 0.93188 0.96488 0.92308 0.90022 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 10.01 71.24 0.71 -1.18 16 2 C -0.09 -2.08 5.88 -19.86 -0.12 -2.19 16 3 C -0.11 -2.13 9.70 22.27 0.22 -1.91 16 4 C -0.10 -1.93 8.84 22.27 0.20 -1.73 16 5 C -0.08 -2.36 3.10 -19.86 -0.06 -2.42 16 6 C -0.04 -1.08 0.59 -53.67 -0.03 -1.11 16 7 C -0.15 -3.04 7.61 71.98 0.55 -2.49 16 8 C -0.12 -3.26 7.66 71.98 0.55 -2.71 16 9 C 0.51 21.98 4.87 87.66 0.43 22.41 16 10 O -0.59 -31.95 15.62 -3.05 -0.05 -31.99 16 11 N -0.60 -25.82 2.22 -851.12 -1.89 -27.71 16 12 C 0.07 2.20 7.91 127.77 1.01 3.21 16 13 C 0.22 11.36 4.20 85.63 0.36 11.72 16 14 C -0.53 -32.62 9.94 25.60 0.25 -32.36 16 15 H 0.03 1.85 7.38 -2.91 -0.02 1.83 16 16 C 0.01 0.58 5.47 84.66 0.46 1.04 16 17 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 18 Si 0.95 45.81 27.47 68.60 1.88 47.70 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 22 C -0.13 -4.92 7.22 22.27 0.16 -4.75 16 23 C -0.13 -4.34 9.70 22.27 0.22 -4.12 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.09 8.08 -2.39 -0.02 1.07 16 26 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 27 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.16 1.99 7.27 -2.91 -0.02 1.97 16 29 H 0.10 1.37 7.35 -2.39 -0.02 1.35 16 30 H 0.06 1.29 8.12 -2.38 -0.02 1.27 16 31 H 0.08 1.60 4.51 -2.39 -0.01 1.59 16 32 H 0.03 1.11 8.03 -2.38 -0.02 1.09 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.90 7.88 -2.39 -0.02 1.88 16 35 H 0.08 2.10 7.11 -2.39 -0.02 2.08 16 36 H 0.06 2.00 8.09 -2.39 -0.02 1.98 16 37 H 0.09 2.77 3.40 -2.38 -0.01 2.76 16 38 H 0.05 2.33 7.13 -2.39 -0.02 2.32 16 39 H 0.02 0.93 6.93 -2.38 -0.02 0.91 16 40 H 0.27 16.16 8.31 -92.70 -0.77 15.39 16 41 H 0.08 3.96 5.33 -2.91 -0.02 3.94 16 42 H 0.11 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -81.55 328.15 6.10 -75.45 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.95 Total: 16.35 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 4.91 Total: -18.61 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -1.59 Total: -88.90 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.70 kcal Total: -81.55 6.10 -75.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343395409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.385 kcal (2) G-P(sol) polarization free energy of solvation -81.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds