Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38386 * 119.93161 * 2 1 4 4 C 1.38338 * 120.29375 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14357 * 0.27975 * 4 3 2 6 6 C 1.39556 * 119.85498 * 359.50911 * 5 4 3 7 7 C 1.47837 * 120.14515 * 180.25053 * 6 5 4 8 8 O 1.21558 * 120.00247 * 180.21325 * 7 6 5 9 9 N 1.34779 * 120.00431 * 0.21788 * 7 6 5 10 10 C 1.46494 * 120.00419 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47239 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47236 * 299.99701 * 11 10 9 13 13 C 1.52998 * 109.47422 * 59.99685 * 11 10 9 14 14 C 1.53000 * 109.47569 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47609 * 179.97438 * 14 11 10 16 16 H 1.07999 * 119.99703 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00306 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99424 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47317 * 60.00205 * 19 17 15 21 21 H 1.48505 * 109.46923 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47393 * 299.99552 * 19 17 15 23 23 C 1.37933 * 119.92659 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47089 * 89.99655 * 1 2 3 25 25 H 1.08997 * 109.47571 * 210.00569 * 1 2 3 26 26 H 1.09002 * 109.46906 * 330.00138 * 1 2 3 27 27 H 1.08001 * 119.85091 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.92371 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.06893 * 179.74088 * 5 4 3 30 30 H 0.97006 * 119.99299 * 359.97438 * 9 7 6 31 31 H 1.08995 * 109.47153 * 299.99913 * 10 9 7 32 32 H 1.09000 * 109.47252 * 59.99802 * 10 9 7 33 33 H 1.09004 * 109.47239 * 60.00138 * 12 11 10 34 34 H 1.09000 * 109.47363 * 179.97438 * 12 11 10 35 35 H 1.08999 * 109.47233 * 300.00579 * 12 11 10 36 36 H 1.09003 * 109.46961 * 60.00146 * 13 11 10 37 37 H 1.09000 * 109.47510 * 180.02562 * 13 11 10 38 38 H 1.08999 * 109.47263 * 300.00552 * 13 11 10 39 39 H 1.08995 * 109.47026 * 300.00172 * 14 11 10 40 40 H 1.09005 * 109.47216 * 59.99440 * 14 11 10 41 41 H 0.97002 * 119.99802 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.07676 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0192 -0.0048 6 6 3.5911 -1.1937 -0.0003 7 6 4.3351 -2.4712 -0.0003 8 8 3.7314 -3.5263 -0.0003 9 7 5.6829 -2.4662 -0.0002 10 6 6.4202 -3.7321 0.0003 11 6 7.9233 -3.4469 -0.0004 12 6 8.2895 -2.6440 -1.2502 13 6 8.2904 -2.6424 1.2482 14 6 8.6934 -4.7690 0.0008 15 6 10.1739 -4.4880 -0.0004 16 1 10.5301 -3.4685 -0.0024 17 6 11.0739 -5.5326 -0.0002 18 7 10.6401 -6.7742 0.0017 19 14 12.9091 -5.1843 -0.0025 20 1 13.2662 -4.4029 1.2087 21 1 13.6564 -6.4676 -0.0025 22 1 13.2637 -4.4057 -1.2163 23 6 2.1951 -1.1954 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6539 2.1325 -0.0004 28 1 4.1136 2.1474 0.0001 29 1 5.3612 0.0275 -0.0086 30 1 6.1647 -1.6243 -0.0005 31 1 6.1590 -4.3043 0.8905 32 1 6.1591 -4.3051 -0.8894 33 1 7.7410 -1.7021 -1.2507 34 1 9.3604 -2.4404 -1.2505 35 1 8.0280 -3.2171 -2.1398 36 1 8.0295 -3.2144 2.1387 37 1 9.3612 -2.4388 1.2475 38 1 7.7418 -1.7005 1.2478 39 1 8.4324 -5.3406 0.8914 40 1 8.4320 -5.3426 -0.8885 41 1 11.2732 -7.5091 0.0022 42 1 1.6551 -2.1308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345943322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = -38.485883 kcal Electronic energy + Delta-G solvation = -20761.859966 eV Core-core repulsion = 17705.717325 eV Total energy + Delta-G solvation = -3056.142642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.24561 -38.64746 -37.02444 -33.87912 -32.94950 -32.02609 -31.21489 -27.41758 -27.05250 -26.52894 -26.24807 -23.90543 -22.47801 -22.00435 -20.03570 -18.52266 -17.34348 -16.36201 -16.28474 -15.78249 -15.10867 -14.94881 -14.59124 -14.42261 -14.04100 -13.75249 -13.54929 -13.29674 -13.06136 -12.72257 -12.49533 -12.33859 -12.06519 -12.00564 -11.79139 -11.28414 -11.16829 -11.01334 -10.87818 -10.64115 -10.41678 -10.27836 -9.88860 -9.87357 -9.18662 -9.17314 -8.96690 -8.94434 -8.70182 -8.36109 -6.00245 -4.01719 0.72399 1.13560 2.89091 3.31657 3.36208 3.37221 3.40110 3.76390 4.44671 4.52655 4.59262 4.67006 4.92730 5.04466 5.11113 5.32662 5.35097 5.36365 5.47573 5.53366 5.61162 5.71610 5.74849 5.83051 6.13648 6.14878 6.15126 6.21022 6.25917 6.32871 6.37737 6.53871 6.61369 6.67674 6.75074 7.04279 7.06003 7.11122 7.63132 7.71779 7.75640 7.98233 8.36952 8.41280 9.02794 9.61332 11.11214 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042738 B = 0.003208 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.990642 B = 8724.838529 C = 9178.171098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.101 4.101 4 C -0.123 4.123 5 C -0.093 4.093 6 C -0.124 4.124 7 C 0.549 3.451 8 O -0.542 6.542 9 N -0.715 5.715 10 C 0.127 3.873 11 C -0.073 4.073 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.512 4.512 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.063 4.063 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.398 0.602 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.783 16.939 -0.024 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.141 4.141 5 C -0.112 4.112 6 C -0.127 4.127 7 C 0.336 3.664 8 O -0.421 6.421 9 N -0.366 5.366 10 C 0.005 3.995 11 C -0.073 4.073 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.001 4.001 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.082 4.082 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.144 0.856 30 H 0.234 0.766 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.118 15.964 -0.024 22.686 hybrid contribution 1.412 0.488 -0.009 1.494 sum -14.706 16.452 -0.032 22.066 Atomic orbital electron populations 1.20797 0.90743 1.02986 1.02532 1.19912 0.96430 0.92833 1.00533 1.21222 0.94313 0.97592 0.98782 1.21086 0.94253 0.98007 1.00798 1.21348 0.99939 0.91863 0.98053 1.20078 0.94429 0.93231 1.04955 1.18288 0.82497 0.88632 0.76999 1.90763 1.68618 1.32491 1.50228 1.46143 1.05678 1.10915 1.73908 1.21673 0.91782 0.84079 1.02004 1.20914 0.91385 0.99935 0.95099 1.21768 1.02027 0.97335 0.97330 1.21768 1.02026 0.97329 0.97340 1.19085 0.94175 0.89308 0.97535 1.21140 0.90953 0.92485 1.50460 0.92310 1.25013 0.98746 0.95188 0.95536 1.69956 1.34427 0.98269 1.50726 0.86705 0.85633 0.77411 0.78508 1.20327 1.21392 1.20333 1.21181 0.92733 0.98377 0.95913 0.91012 0.91246 0.91443 0.85754 0.85400 0.85601 0.76592 0.91608 0.91614 0.95356 0.91352 0.93283 0.93282 0.91351 0.95358 0.96299 0.96306 0.92965 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.10 -0.93 5.87 -104.68 -0.61 -1.54 16 3 C -0.10 -0.85 9.69 -39.49 -0.38 -1.24 16 4 C -0.12 -1.08 10.03 -39.64 -0.40 -1.48 16 5 C -0.09 -0.98 9.54 -39.19 -0.37 -1.35 16 6 C -0.12 -1.61 5.87 -104.97 -0.62 -2.23 16 7 C 0.55 8.84 7.77 -12.33 -0.10 8.74 16 8 O -0.54 -10.66 16.35 5.32 0.09 -10.58 16 9 N -0.71 -10.84 4.91 -61.26 -0.30 -11.15 16 10 C 0.13 2.29 4.56 -4.05 -0.02 2.27 16 11 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 12 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 13 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 14 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 15 C -0.51 -13.55 7.65 -34.44 -0.26 -13.82 16 16 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.06 -0.76 9.24 -39.18 -0.36 -1.12 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 27 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 28 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.13 1.12 6.41 -52.48 -0.34 0.78 16 30 H 0.40 5.09 4.20 -40.82 -0.17 4.92 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 34 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 38 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.14 1.67 7.65 -52.48 -0.40 1.26 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -31.28 340.27 -8.22 -39.50 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.39 Total: 1.90 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -2.46 Total: -15.26 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.44 Total: -36.84 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.28 -8.22 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345943322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.017 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds