Wall clock time and date at job start Mon Mar 30 2020 02:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38386 * 119.93161 * 2 1 4 4 C 1.38338 * 120.29375 * 179.97438 * 3 2 1 5 5 C 1.37979 * 120.14357 * 0.27975 * 4 3 2 6 6 C 1.39556 * 119.85498 * 359.50911 * 5 4 3 7 7 C 1.47837 * 120.14515 * 180.25053 * 6 5 4 8 8 O 1.21558 * 120.00247 * 180.21325 * 7 6 5 9 9 N 1.34779 * 120.00431 * 0.21788 * 7 6 5 10 10 C 1.46494 * 120.00419 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47239 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47236 * 299.99701 * 11 10 9 13 13 C 1.52998 * 109.47422 * 59.99685 * 11 10 9 14 14 C 1.53000 * 109.47569 * 179.97438 * 11 10 9 15 15 C 1.50697 * 109.47609 * 179.97438 * 14 11 10 16 16 H 1.07999 * 119.99703 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00306 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99424 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47317 * 60.00205 * 19 17 15 21 21 H 1.48505 * 109.46923 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47393 * 299.99552 * 19 17 15 23 23 C 1.37933 * 119.92659 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47089 * 89.99655 * 1 2 3 25 25 H 1.08997 * 109.47571 * 210.00569 * 1 2 3 26 26 H 1.09002 * 109.46906 * 330.00138 * 1 2 3 27 27 H 1.08001 * 119.85091 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.92371 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.06893 * 179.74088 * 5 4 3 30 30 H 0.97006 * 119.99299 * 359.97438 * 9 7 6 31 31 H 1.08995 * 109.47153 * 299.99913 * 10 9 7 32 32 H 1.09000 * 109.47252 * 59.99802 * 10 9 7 33 33 H 1.09004 * 109.47239 * 60.00138 * 12 11 10 34 34 H 1.09000 * 109.47363 * 179.97438 * 12 11 10 35 35 H 1.08999 * 109.47233 * 300.00579 * 12 11 10 36 36 H 1.09003 * 109.46961 * 60.00146 * 13 11 10 37 37 H 1.09000 * 109.47510 * 180.02562 * 13 11 10 38 38 H 1.08999 * 109.47263 * 300.00552 * 13 11 10 39 39 H 1.08995 * 109.47026 * 300.00172 * 14 11 10 40 40 H 1.09005 * 109.47216 * 59.99440 * 14 11 10 41 41 H 0.97002 * 119.99802 * 180.02562 * 18 17 15 42 42 H 1.08004 * 120.07676 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 0.0005 5 6 4.2812 0.0192 -0.0048 6 6 3.5911 -1.1937 -0.0003 7 6 4.3351 -2.4712 -0.0003 8 8 3.7314 -3.5263 -0.0003 9 7 5.6829 -2.4662 -0.0002 10 6 6.4202 -3.7321 0.0003 11 6 7.9233 -3.4469 -0.0004 12 6 8.2895 -2.6440 -1.2502 13 6 8.2904 -2.6424 1.2482 14 6 8.6934 -4.7690 0.0008 15 6 10.1739 -4.4880 -0.0004 16 1 10.5301 -3.4685 -0.0024 17 6 11.0739 -5.5326 -0.0002 18 7 10.6401 -6.7742 0.0017 19 14 12.9091 -5.1843 -0.0025 20 1 13.2662 -4.4029 1.2087 21 1 13.6564 -6.4676 -0.0025 22 1 13.2637 -4.4057 -1.2163 23 6 2.1951 -1.1954 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6539 2.1325 -0.0004 28 1 4.1136 2.1474 0.0001 29 1 5.3612 0.0275 -0.0086 30 1 6.1647 -1.6243 -0.0005 31 1 6.1590 -4.3043 0.8905 32 1 6.1591 -4.3051 -0.8894 33 1 7.7410 -1.7021 -1.2507 34 1 9.3604 -2.4404 -1.2505 35 1 8.0280 -3.2171 -2.1398 36 1 8.0295 -3.2144 2.1387 37 1 9.3612 -2.4388 1.2475 38 1 7.7418 -1.7005 1.2478 39 1 8.4324 -5.3406 0.8914 40 1 8.4320 -5.3426 -0.8885 41 1 11.2732 -7.5091 0.0022 42 1 1.6551 -2.1308 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345943322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:11 Heat of formation + Delta-G solvation = -56.514849 kcal Electronic energy + Delta-G solvation = -20762.641761 eV Core-core repulsion = 17705.717325 eV Total energy + Delta-G solvation = -3056.924436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35668 -39.69222 -38.54213 -35.38576 -34.25651 -33.43652 -32.06684 -29.15338 -28.16664 -27.97983 -27.41623 -25.38119 -24.00422 -22.76647 -21.23832 -19.95731 -18.53594 -18.32339 -17.34661 -16.80965 -16.48986 -16.47512 -15.80053 -15.56176 -15.23157 -14.89928 -14.64190 -14.53963 -14.41204 -13.95078 -13.89618 -13.81942 -13.05368 -12.90934 -12.80979 -12.75906 -12.59323 -12.53355 -12.33990 -12.24239 -12.03396 -11.97027 -11.55629 -11.26305 -10.93599 -10.83173 -10.50695 -10.24092 -9.87824 -9.66101 -8.13826 -6.21955 -0.13855 0.39426 1.42872 1.45112 1.52278 1.83224 2.12424 2.45148 2.87307 3.20576 3.66206 3.82754 3.95914 3.98156 4.05410 4.16929 4.21101 4.38774 4.40795 4.64737 4.68618 4.68850 4.79903 4.84014 4.90606 4.93865 4.99703 5.07465 5.10921 5.26801 5.32658 5.36010 5.43793 5.44243 5.49086 5.51456 5.55878 5.58922 5.78824 5.89337 5.97391 6.29590 6.50611 6.92968 7.14891 7.45852 8.98666 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042738 B = 0.003208 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.990642 B = 8724.838529 C = 9178.171098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.092 4.092 4 C -0.119 4.119 5 C -0.095 4.095 6 C -0.149 4.149 7 C 0.547 3.453 8 O -0.590 6.590 9 N -0.702 5.702 10 C 0.140 3.860 11 C -0.064 4.064 12 C -0.122 4.122 13 C -0.122 4.122 14 C 0.040 3.960 15 C -0.514 4.514 16 H 0.074 0.926 17 C -0.006 4.006 18 N -0.939 5.939 19 Si 0.960 3.040 20 H -0.266 1.266 21 H -0.292 1.292 22 H -0.266 1.266 23 C -0.084 4.084 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.143 0.857 30 H 0.412 0.588 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.059 0.941 38 H 0.069 0.931 39 H -0.014 1.014 40 H -0.014 1.014 41 H 0.260 0.740 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.734 21.414 -0.027 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.110 4.110 4 C -0.137 4.137 5 C -0.113 4.113 6 C -0.152 4.152 7 C 0.336 3.664 8 O -0.472 6.472 9 N -0.354 5.354 10 C 0.016 3.984 11 C -0.065 4.065 12 C -0.180 4.180 13 C -0.180 4.180 14 C 0.002 3.998 15 C -0.552 4.552 16 H 0.092 0.908 17 C -0.203 4.203 18 N -0.581 5.581 19 Si 0.785 3.215 20 H -0.191 1.191 21 H -0.218 1.218 22 H -0.191 1.191 23 C -0.103 4.103 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.161 0.839 30 H 0.252 0.748 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.004 0.996 40 H 0.004 0.996 41 H 0.068 0.932 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.061 20.493 -0.027 26.037 hybrid contribution 1.282 -0.860 -0.008 1.543 sum -14.779 19.634 -0.035 24.574 Atomic orbital electron populations 1.20858 0.89011 1.03843 1.03322 1.20209 0.97799 0.92336 0.99713 1.21679 0.94610 0.98286 0.96448 1.21503 0.94558 0.98521 0.99108 1.21568 1.00892 0.91362 0.97505 1.19884 0.94635 0.92430 1.08226 1.18878 0.82450 0.89441 0.75596 1.90732 1.69469 1.34563 1.52413 1.45882 1.05529 1.10271 1.73726 1.21279 0.91586 0.85244 1.00324 1.20714 0.90975 0.97509 0.97271 1.21707 1.01977 0.98656 0.95622 1.21707 1.01976 0.98647 0.95634 1.18967 0.94756 0.91678 0.94361 1.21561 0.91698 0.93078 1.48887 0.90772 1.25968 1.03894 0.94963 0.95437 1.70123 1.36028 0.99396 1.52513 0.85579 0.79557 0.77178 0.79210 1.19065 1.21779 1.19080 1.21217 0.92694 0.98972 0.97434 0.90180 0.91712 0.89317 0.82410 0.82074 0.83917 0.74825 0.93465 0.93470 0.91238 0.92219 0.94440 0.94441 0.92218 0.91241 0.99597 0.99609 0.93172 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.23 0.71 -0.60 16 2 C -0.10 -1.71 5.87 -19.90 -0.12 -1.82 16 3 C -0.09 -1.18 9.69 22.33 0.22 -0.96 16 4 C -0.12 -1.56 10.03 22.23 0.22 -1.33 16 5 C -0.09 -1.70 9.54 22.53 0.21 -1.48 16 6 C -0.15 -3.77 5.87 -20.09 -0.12 -3.89 16 7 C 0.55 17.91 7.77 86.78 0.67 18.59 16 8 O -0.59 -24.51 16.35 -3.90 -0.06 -24.58 16 9 N -0.70 -20.88 4.91 -466.00 -2.29 -23.17 16 10 C 0.14 5.20 4.56 86.38 0.39 5.59 16 11 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 12 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 13 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 14 C 0.04 2.05 4.04 29.85 0.12 2.17 16 15 C -0.51 -27.55 7.65 25.60 0.20 -27.35 16 16 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 17 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 18 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 19 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 C -0.08 -2.01 9.24 22.53 0.21 -1.80 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.80 8.08 -2.39 -0.02 0.79 16 26 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 27 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 28 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.14 1.96 6.41 -2.91 -0.02 1.94 16 30 H 0.41 9.47 4.20 -92.70 -0.39 9.09 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 1.75 6.86 -2.38 -0.02 1.73 16 34 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 35 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 38 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 39 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 41 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.12 3.10 7.65 -2.91 -0.02 3.08 16 Total: -1.00 -72.04 340.27 4.90 -67.15 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.62 Total: 14.56 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 4.32 Total: -22.30 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -2.00 Total: -80.36 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.06 Total: -24.58 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.04 4.90 -67.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345943322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.632 kcal (2) G-P(sol) polarization free energy of solvation -72.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds