Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38362 * 119.85431 * 2 1 4 4 C 1.37955 * 120.14149 * 180.30234 * 3 2 1 5 5 C 1.39575 * 119.85263 * 359.43978 * 4 3 2 6 6 C 1.47849 * 120.14487 * 180.30542 * 5 4 3 7 7 O 1.21550 * 119.99902 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00150 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00008 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47064 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.47031 * 299.99959 * 10 9 8 12 12 C 1.52997 * 109.47404 * 59.99734 * 10 9 8 13 13 C 1.52997 * 109.47031 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.46946 * 179.97438 * 13 10 9 15 15 H 1.07999 * 120.00311 * 359.97438 * 14 13 10 16 16 C 1.37884 * 119.99883 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99987 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99861 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46617 * 90.00272 * 18 16 14 20 20 H 1.48496 * 109.46920 * 210.00024 * 18 16 14 21 21 H 1.48498 * 109.47310 * 330.00424 * 18 16 14 22 22 C 1.39580 * 119.71378 * 0.28043 * 5 4 3 23 23 C 1.37959 * 119.84960 * 359.97438 * 22 5 4 24 24 H 1.08992 * 109.47461 * 270.26125 * 1 2 3 25 25 H 1.09007 * 109.46791 * 30.25803 * 1 2 3 26 26 H 1.09004 * 109.47162 * 150.25525 * 1 2 3 27 27 H 1.07998 * 119.92815 * 0.02562 * 3 2 1 28 28 H 1.08002 * 120.07573 * 179.72197 * 4 3 2 29 29 H 0.96996 * 119.99578 * 359.97438 * 8 6 5 30 30 H 1.09000 * 109.46972 * 299.99626 * 9 8 6 31 31 H 1.08991 * 109.47166 * 59.99878 * 9 8 6 32 32 H 1.08993 * 109.47261 * 59.99726 * 11 10 9 33 33 H 1.08996 * 109.47135 * 180.02562 * 11 10 9 34 34 H 1.09005 * 109.46747 * 300.00230 * 11 10 9 35 35 H 1.09000 * 109.47350 * 60.00186 * 12 10 9 36 36 H 1.09003 * 109.47483 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47098 * 299.99840 * 12 10 9 38 38 H 1.08992 * 109.47263 * 299.99714 * 13 10 9 39 39 H 1.08999 * 109.46919 * 59.99987 * 13 10 9 40 40 H 0.96993 * 120.00192 * 180.02562 * 17 16 14 41 41 H 1.07997 * 120.07546 * 180.02562 * 22 5 4 42 42 H 1.07996 * 119.92201 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5753 1.2069 -0.0063 5 6 4.2761 -0.0001 -0.0008 6 6 5.7546 -0.0002 -0.0007 7 8 6.3624 1.0525 -0.0058 8 7 6.4285 -1.1674 0.0040 9 6 7.8935 -1.1674 0.0036 10 6 8.4034 -2.6099 0.0089 11 6 7.8938 -3.3264 1.2611 12 6 7.8930 -3.3360 -1.2373 13 6 9.9334 -2.6100 0.0078 14 6 10.4357 -4.0308 0.0137 15 1 9.7339 -4.8517 0.0182 16 6 11.7913 -4.2828 0.0144 17 7 12.2296 -5.5228 0.0190 18 14 13.0052 -2.8630 0.0072 19 1 13.3274 -2.4803 1.4055 20 1 14.2481 -3.2780 -0.6913 21 1 12.4050 -1.7021 -0.6979 22 6 3.5752 -1.2071 0.0050 23 6 2.1956 -1.2000 0.0059 24 1 -0.3634 0.0047 1.0276 25 1 -0.3633 0.8877 -0.5179 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6522 2.1332 0.0004 28 1 4.1118 2.1442 -0.0108 29 1 5.9434 -2.0074 0.0078 30 1 8.2566 -0.6575 -0.8887 31 1 8.2571 -0.6499 0.8912 32 1 6.8038 -3.3263 1.2615 33 1 8.2574 -4.3539 1.2652 34 1 8.2574 -2.8091 2.1490 35 1 8.2561 -2.8256 -2.1294 36 1 8.2559 -4.3638 -1.2333 37 1 6.8030 -3.3360 -1.2369 38 1 10.2961 -2.0998 -0.8844 39 1 10.2974 -2.0926 0.8955 40 1 13.1832 -5.7001 0.0198 41 1 4.1116 -2.1444 0.0097 42 1 1.6521 -2.1332 0.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346006545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = -53.773563 kcal Electronic energy + Delta-G solvation = -20773.382179 eV Core-core repulsion = 17716.576613 eV Total energy + Delta-G solvation = -3056.805565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33893 -39.71499 -38.58743 -35.32718 -34.23254 -33.53476 -31.90286 -29.83016 -28.74021 -28.00850 -27.15079 -24.59105 -23.62629 -23.07831 -21.28971 -20.04618 -18.93868 -18.66073 -17.26879 -16.45538 -16.30009 -16.21639 -15.88935 -15.65596 -15.27416 -15.21213 -14.59986 -14.53529 -14.38955 -14.21472 -14.06205 -13.91942 -13.00247 -12.97988 -12.85656 -12.82186 -12.61316 -12.54007 -12.31804 -12.18478 -11.93340 -11.78565 -11.53951 -11.35140 -11.00030 -10.89789 -10.71001 -10.18848 -9.96102 -9.62641 -8.22986 -6.22967 -0.15426 0.41603 1.35226 1.38172 1.48105 1.83047 2.15329 2.38532 2.87330 3.12475 3.67314 3.81940 3.92103 4.01271 4.03123 4.04867 4.13860 4.39619 4.44590 4.61167 4.67800 4.73026 4.78412 4.83121 4.88887 4.92316 4.99705 5.07698 5.08986 5.24978 5.27542 5.30721 5.34717 5.39367 5.40185 5.44218 5.53916 5.60669 5.67497 5.75339 5.96335 6.37219 6.51186 6.83752 7.15926 7.39785 8.92548 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039123 B = 0.003345 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.525545 B = 8368.870534 C = 8882.732846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.061 4.061 3 C -0.133 4.133 4 C -0.074 4.074 5 C -0.161 4.161 6 C 0.550 3.450 7 O -0.587 6.587 8 N -0.705 5.705 9 C 0.137 3.863 10 C -0.058 4.058 11 C -0.125 4.125 12 C -0.124 4.124 13 C -0.004 4.004 14 C -0.501 4.501 15 H 0.054 0.946 16 C 0.006 3.994 17 N -0.950 5.950 18 Si 0.933 3.067 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.253 1.253 22 C -0.082 4.082 23 C -0.130 4.130 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.149 0.851 28 H 0.123 0.877 29 H 0.411 0.589 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.263 0.737 41 H 0.142 0.858 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.481 10.091 -0.010 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.061 4.061 3 C -0.151 4.151 4 C -0.093 4.093 5 C -0.164 4.164 6 C 0.339 3.661 7 O -0.470 6.470 8 N -0.357 5.357 9 C 0.013 3.987 10 C -0.058 4.058 11 C -0.182 4.182 12 C -0.182 4.182 13 C -0.042 4.042 14 C -0.539 4.539 15 H 0.072 0.928 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.758 3.242 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.177 1.177 22 C -0.101 4.101 23 C -0.148 4.148 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.167 0.833 28 H 0.141 0.859 29 H 0.250 0.750 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.160 0.840 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -24.876 10.705 -0.019 27.082 hybrid contribution 1.395 -0.074 0.026 1.397 sum -23.481 10.631 0.007 25.775 Atomic orbital electron populations 1.20937 0.88601 1.04241 1.03610 1.20571 0.98026 0.92721 0.94806 1.21287 0.92866 0.99378 1.01530 1.21340 0.95005 0.97197 0.95721 1.19890 0.91252 0.95953 1.09289 1.18788 0.88295 0.83421 0.75553 1.90726 1.71052 1.32719 1.52454 1.45899 1.07284 1.08684 1.73859 1.21340 0.79162 0.97065 1.01132 1.20559 0.95796 0.92489 0.96983 1.21716 0.99940 1.00499 0.96036 1.21712 0.99932 1.00455 0.96077 1.19570 0.92730 0.95716 0.96173 1.21358 0.91858 0.92432 1.48277 0.92796 1.25817 1.00614 0.97488 0.95081 1.70033 1.14752 1.20793 1.53645 0.85913 0.78631 0.80798 0.78836 1.19731 1.21438 1.17656 1.21542 0.95407 0.96729 0.96430 1.21355 0.93314 0.99229 1.00904 0.89718 0.90321 0.90003 0.83308 0.85941 0.74984 0.92587 0.92508 0.91392 0.93289 0.93641 0.93675 0.93281 0.91396 0.96696 0.96847 0.92844 0.83998 0.82675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.00 71.24 0.71 -0.11 16 2 C -0.06 -0.81 5.89 -19.81 -0.12 -0.93 16 3 C -0.13 -2.12 9.68 22.23 0.22 -1.91 16 4 C -0.07 -1.64 9.60 22.53 0.22 -1.42 16 5 C -0.16 -3.85 5.87 -20.09 -0.12 -3.97 16 6 C 0.55 16.75 7.77 86.79 0.67 17.42 16 7 O -0.59 -22.61 16.35 -3.87 -0.06 -22.67 16 8 N -0.70 -19.42 4.91 -465.98 -2.29 -21.71 16 9 C 0.14 4.54 4.56 86.38 0.39 4.93 16 10 C -0.06 -2.07 0.54 -52.18 -0.03 -2.10 16 11 C -0.12 -4.15 8.05 71.98 0.58 -3.57 16 12 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 13 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 14 C -0.50 -27.19 8.20 25.60 0.21 -26.98 16 15 H 0.05 3.13 5.92 -2.91 -0.02 3.12 16 16 C 0.01 0.36 5.47 84.66 0.46 0.82 16 17 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 18 Si 0.93 44.64 27.47 68.60 1.88 46.53 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 21 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 22 C -0.08 -1.46 9.54 22.53 0.21 -1.24 16 23 C -0.13 -1.79 9.68 22.23 0.22 -1.58 16 24 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.08 0.43 8.08 -2.38 -0.02 0.41 16 26 H 0.08 0.41 8.08 -2.38 -0.02 0.39 16 27 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.12 2.93 7.65 -2.91 -0.02 2.91 16 29 H 0.41 9.00 4.20 -92.71 -0.39 8.61 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 33 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 34 H 0.04 1.52 8.14 -2.38 -0.02 1.51 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 37 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 38 H 0.01 0.68 7.20 -2.39 -0.02 0.67 16 39 H 0.01 0.60 7.57 -2.39 -0.02 0.59 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.14 1.95 6.41 -2.91 -0.02 1.93 16 42 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -70.37 336.66 4.70 -65.67 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.56 Total: 14.81 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.30 Total: -24.30 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -1.99 Total: -80.04 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.06 Total: -22.67 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -70.37 4.70 -65.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346006545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.893 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds