Wall clock time and date at job start Mon Mar 30 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00002 * 2 1 4 4 C 1.38212 * 119.99915 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.00074 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.00061 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00059 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47258 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47389 * 300.00176 * 7 6 5 10 10 C 1.50696 * 109.47192 * 60.00231 * 7 6 5 11 11 O 1.21284 * 120.00109 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00137 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 7 14 14 C 1.53002 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46969 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46861 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00235 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99666 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00209 * 20 18 16 22 22 H 1.48499 * 109.47078 * 209.99921 * 20 18 16 23 23 H 1.48503 * 109.47230 * 330.00590 * 20 18 16 24 24 C 1.38216 * 120.00127 * 180.27845 * 2 1 3 25 25 H 1.09001 * 109.46647 * 89.99823 * 1 2 3 26 26 H 1.09003 * 109.46838 * 209.99382 * 1 2 3 27 27 H 1.09001 * 109.46689 * 329.99407 * 1 2 3 28 28 H 1.07996 * 120.00255 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.00227 * 179.97438 * 4 3 2 30 30 H 1.08008 * 119.99564 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.46838 * 300.00434 * 9 7 6 32 32 H 1.09004 * 109.47006 * 59.99931 * 9 7 6 33 33 H 1.08992 * 109.47513 * 179.97438 * 9 7 6 34 34 H 0.96999 * 120.00047 * 359.97438 * 12 10 7 35 35 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 36 36 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 37 37 H 1.09004 * 109.46930 * 299.99770 * 14 13 12 38 38 H 1.09004 * 109.47059 * 59.99372 * 14 13 12 39 39 H 1.08992 * 109.47534 * 299.99582 * 15 14 13 40 40 H 1.08996 * 109.47134 * 60.00388 * 15 14 13 41 41 H 0.96992 * 120.00108 * 179.97438 * 19 18 16 42 42 H 1.08000 * 119.99721 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 3.5807 -1.1970 -0.0016 7 6 4.3342 -2.5021 -0.0034 8 1 3.6259 -3.3305 -0.0035 9 6 5.2124 -2.5823 -1.2536 10 6 5.2020 -2.5828 1.2260 11 8 5.2077 -1.6705 2.0253 12 7 5.9718 -3.6687 1.4374 13 6 6.8150 -3.7473 2.6330 14 6 7.5801 -5.0723 2.6311 15 6 8.4611 -5.1541 3.8793 16 6 9.2142 -6.4594 3.8778 17 1 9.0777 -7.1607 3.0678 18 6 10.0767 -6.7589 4.9110 19 7 10.7336 -7.8983 4.9100 20 14 10.3122 -5.5463 6.3123 21 1 9.3248 -5.8309 7.3843 22 1 11.6870 -5.6806 6.8573 23 1 10.1118 -4.1635 5.8093 24 6 2.1981 -1.1970 -0.0058 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6584 2.1326 0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.3518 0.0000 -0.0024 31 1 4.5847 -2.5239 -2.1429 32 1 5.9208 -1.7538 -1.2539 33 1 5.7578 -3.5260 -1.2547 34 1 5.9670 -4.3984 0.7985 35 1 7.5230 -2.9185 2.6334 36 1 6.1890 -3.6908 3.5235 37 1 6.8718 -5.9008 2.6309 38 1 8.2060 -5.1292 1.7405 39 1 9.1694 -4.3257 3.8791 40 1 7.8355 -5.0971 4.7700 41 1 11.3406 -8.1088 5.6366 42 1 1.6581 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351698491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:33 Heat of formation + Delta-G solvation = -42.412960 kcal Electronic energy + Delta-G solvation = -20241.357439 eV Core-core repulsion = 17185.044507 eV Total energy + Delta-G solvation = -3056.312933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36837 -38.89488 -35.58694 -34.59692 -33.32042 -32.43704 -31.42087 -29.84762 -27.26649 -26.96045 -24.87140 -23.03089 -22.23080 -21.24736 -20.56560 -19.34116 -17.07118 -16.84710 -16.59990 -15.84338 -15.66630 -15.17154 -14.80428 -14.22152 -14.14676 -13.97172 -13.60896 -13.56955 -13.19076 -12.83949 -12.70392 -12.48891 -12.39412 -12.05072 -11.94877 -11.89700 -11.67175 -11.13285 -11.06879 -11.01307 -10.89481 -10.17838 -9.96186 -9.77828 -9.52112 -9.23934 -8.90591 -8.84441 -8.66913 -8.56539 -6.07379 -4.06115 1.22664 1.30288 2.72888 3.28230 3.30683 3.38256 3.42569 3.72726 4.34762 4.43562 4.56092 4.72272 4.85968 4.89923 4.98894 5.05246 5.17526 5.26727 5.31114 5.34901 5.39270 5.54286 5.54836 5.59437 5.62388 5.65170 5.85336 5.92216 6.00403 6.00905 6.35081 6.37133 6.43465 6.43853 6.51213 6.69452 6.78582 6.90246 7.21642 7.35101 7.63431 7.75773 8.33818 8.49274 8.96364 9.54916 11.05848 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035798 B = 0.002799 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.983249 B =10001.732398 C =10241.307829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.088 4.088 6 C -0.061 4.061 7 C -0.073 4.073 8 H 0.103 0.897 9 C -0.141 4.141 10 C 0.512 3.488 11 O -0.535 6.535 12 N -0.725 5.725 13 C 0.114 3.886 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.113 4.113 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.014 0.986 41 H 0.263 0.737 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.400 15.128 -14.256 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.106 4.106 6 C -0.061 4.061 7 C -0.095 4.095 8 H 0.121 0.879 9 C -0.198 4.198 10 C 0.297 3.703 11 O -0.412 6.412 12 N -0.376 5.376 13 C -0.008 4.008 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.131 4.131 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.233 0.767 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.248 15.677 -13.553 27.613 hybrid contribution 0.299 0.083 0.615 0.689 sum -17.950 15.760 -12.938 27.166 Atomic orbital electron populations 1.20768 0.91314 1.02718 1.02102 1.19827 0.95905 0.93107 1.00423 1.20992 0.94271 0.97345 1.01417 1.21092 0.94253 0.97947 1.00380 1.20901 0.99864 0.91775 0.98101 1.19291 0.93194 0.93669 0.99944 1.20317 0.97451 0.97115 0.94586 0.87879 1.21800 0.99398 1.02929 0.95705 1.20430 0.80286 0.82358 0.87213 1.90719 1.65912 1.37781 1.46749 1.46161 1.44766 1.20525 1.26189 1.21648 0.93011 0.99777 0.86414 1.21702 0.98368 0.93806 1.01209 1.19501 0.94745 0.98000 0.92675 1.21096 1.24124 1.02074 1.08709 0.91010 1.25031 0.95272 0.95133 0.98057 1.69908 1.28334 1.22933 1.33007 0.86775 0.77419 0.82438 0.82664 1.20243 1.21358 1.18905 1.20864 0.93182 0.97632 1.01429 0.91349 0.91617 0.91667 0.86377 0.86177 0.86346 0.91266 0.91787 0.91445 0.76683 0.91837 0.91869 0.92135 0.92099 0.96324 0.96770 0.92689 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 4 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 5 C -0.09 -1.06 7.93 -39.58 -0.31 -1.38 16 6 C -0.06 -0.70 4.40 -104.63 -0.46 -1.16 16 7 C -0.07 -0.76 2.90 -92.92 -0.27 -1.03 16 8 H 0.10 0.86 7.88 -51.93 -0.41 0.46 16 9 C -0.14 -1.16 8.90 37.16 0.33 -0.83 16 10 C 0.51 7.20 7.02 -10.99 -0.08 7.12 16 11 O -0.54 -9.71 15.11 5.55 0.08 -9.63 16 12 N -0.73 -9.72 5.45 -60.29 -0.33 -10.05 16 13 C 0.11 1.89 5.67 -4.04 -0.02 1.86 16 14 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 15 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 16 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 17 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 20 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 C -0.11 -1.19 9.33 -39.58 -0.37 -1.56 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.12 1.44 7.52 -52.48 -0.39 1.05 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 33 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 34 H 0.40 4.24 7.89 -40.82 -0.32 3.92 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.12 1.02 7.95 -52.49 -0.42 0.61 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -33.39 347.37 -8.70 -42.09 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.89 Total: 0.18 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.90 Total: -17.99 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.45 Total: -37.01 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.39 -8.70 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351698491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.320 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds