Wall clock time and date at job start Mon Mar 30 2020 02:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00002 * 2 1 4 4 C 1.38212 * 119.99915 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.00074 * 0.02562 * 4 3 2 6 6 C 1.38207 * 120.00061 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00059 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47258 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47389 * 300.00176 * 7 6 5 10 10 C 1.50696 * 109.47192 * 60.00231 * 7 6 5 11 11 O 1.21284 * 120.00109 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00137 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 7 14 14 C 1.53002 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.46969 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46861 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00235 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99666 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47136 * 90.00209 * 20 18 16 22 22 H 1.48499 * 109.47078 * 209.99921 * 20 18 16 23 23 H 1.48503 * 109.47230 * 330.00590 * 20 18 16 24 24 C 1.38216 * 120.00127 * 180.27845 * 2 1 3 25 25 H 1.09001 * 109.46647 * 89.99823 * 1 2 3 26 26 H 1.09003 * 109.46838 * 209.99382 * 1 2 3 27 27 H 1.09001 * 109.46689 * 329.99407 * 1 2 3 28 28 H 1.07996 * 120.00255 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.00227 * 179.97438 * 4 3 2 30 30 H 1.08008 * 119.99564 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.46838 * 300.00434 * 9 7 6 32 32 H 1.09004 * 109.47006 * 59.99931 * 9 7 6 33 33 H 1.08992 * 109.47513 * 179.97438 * 9 7 6 34 34 H 0.96999 * 120.00047 * 359.97438 * 12 10 7 35 35 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 36 36 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 37 37 H 1.09004 * 109.46930 * 299.99770 * 14 13 12 38 38 H 1.09004 * 109.47059 * 59.99372 * 14 13 12 39 39 H 1.08992 * 109.47534 * 299.99582 * 15 14 13 40 40 H 1.08996 * 109.47134 * 60.00388 * 15 14 13 41 41 H 0.96992 * 120.00108 * 179.97438 * 19 18 16 42 42 H 1.08000 * 119.99721 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 3.5807 -1.1970 -0.0016 7 6 4.3342 -2.5021 -0.0034 8 1 3.6259 -3.3305 -0.0035 9 6 5.2124 -2.5823 -1.2536 10 6 5.2020 -2.5828 1.2260 11 8 5.2077 -1.6705 2.0253 12 7 5.9718 -3.6687 1.4374 13 6 6.8150 -3.7473 2.6330 14 6 7.5801 -5.0723 2.6311 15 6 8.4611 -5.1541 3.8793 16 6 9.2142 -6.4594 3.8778 17 1 9.0777 -7.1607 3.0678 18 6 10.0767 -6.7589 4.9110 19 7 10.7336 -7.8983 4.9100 20 14 10.3122 -5.5463 6.3123 21 1 9.3248 -5.8309 7.3843 22 1 11.6870 -5.6806 6.8573 23 1 10.1118 -4.1635 5.8093 24 6 2.1981 -1.1970 -0.0058 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6584 2.1326 0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.3518 0.0000 -0.0024 31 1 4.5847 -2.5239 -2.1429 32 1 5.9208 -1.7538 -1.2539 33 1 5.7578 -3.5260 -1.2547 34 1 5.9670 -4.3984 0.7985 35 1 7.5230 -2.9185 2.6334 36 1 6.1890 -3.6908 3.5235 37 1 6.8718 -5.9008 2.6309 38 1 8.2060 -5.1292 1.7405 39 1 9.1694 -4.3257 3.8791 40 1 7.8355 -5.0971 4.7700 41 1 11.3406 -8.1088 5.6366 42 1 1.6581 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351698491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:33 Heat of formation + Delta-G solvation = -62.426727 kcal Electronic energy + Delta-G solvation = -20242.225301 eV Core-core repulsion = 17185.044507 eV Total energy + Delta-G solvation = -3057.180795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33667 -39.82302 -37.02038 -35.47815 -35.11429 -33.41287 -32.96565 -30.68864 -28.89255 -27.65189 -25.84145 -24.53061 -23.04053 -22.29365 -22.14995 -20.42443 -18.97274 -17.89759 -17.60621 -16.97341 -16.74527 -16.29483 -16.21104 -15.57057 -15.36250 -14.85678 -14.79201 -14.48262 -14.35951 -13.95208 -13.86680 -13.73016 -13.41699 -13.15729 -13.01195 -12.74686 -12.71463 -12.62015 -12.44299 -11.93273 -11.86661 -11.80220 -11.71083 -11.60139 -11.33866 -10.77134 -10.75372 -10.07909 -9.68758 -9.43906 -8.30189 -6.33890 0.43708 0.52159 1.35836 1.37522 1.49218 1.64059 2.22235 2.35401 2.90672 3.05514 3.55914 3.76107 4.00201 4.06607 4.14068 4.17309 4.20325 4.28446 4.30860 4.49606 4.54488 4.58904 4.73165 4.86760 4.86898 4.88254 4.89201 4.93225 5.01681 5.03244 5.19289 5.23934 5.33193 5.39738 5.50225 5.54891 5.58986 5.64413 5.69447 5.72178 6.15269 6.26731 6.58702 6.74248 7.26522 7.30960 8.86162 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035798 B = 0.002799 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.983249 B =10001.732398 C =10241.307829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.130 4.130 4 C -0.131 4.131 5 C -0.111 4.111 6 C -0.076 4.076 7 C -0.064 4.064 8 H 0.129 0.871 9 C -0.137 4.137 10 C 0.511 3.489 11 O -0.579 6.579 12 N -0.716 5.716 13 C 0.127 3.873 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.530 4.530 17 H 0.039 0.961 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.249 1.249 24 C -0.124 4.124 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.415 0.585 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.266 0.734 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.212 16.241 -14.762 29.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.149 4.149 5 C -0.130 4.130 6 C -0.076 4.076 7 C -0.085 4.085 8 H 0.147 0.853 9 C -0.195 4.195 10 C 0.298 3.702 11 O -0.459 6.459 12 N -0.368 5.368 13 C 0.003 3.997 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.173 1.173 24 C -0.142 4.142 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.252 0.748 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.076 16.776 -14.098 29.719 hybrid contribution 0.834 -0.294 0.708 1.132 sum -19.241 16.483 -13.391 28.657 Atomic orbital electron populations 1.20814 0.89279 1.03441 1.03173 1.20237 0.97519 0.92885 0.99296 1.21305 0.94053 0.98515 1.00921 1.21341 0.95039 0.98148 1.00376 1.20972 0.99506 0.92840 0.99636 1.19500 0.93926 0.93859 1.00360 1.20343 0.97350 0.97601 0.93250 0.85348 1.21812 0.99232 1.03171 0.95262 1.21105 0.79962 0.81379 0.87754 1.90700 1.67329 1.39313 1.48553 1.45985 1.44090 1.21163 1.25530 1.21274 0.92879 0.98043 0.87483 1.21476 0.97975 0.95159 0.99117 1.19468 0.95109 0.95286 0.95203 1.21461 1.24386 1.03378 1.07560 0.94289 1.25975 0.95112 0.97015 1.01115 1.70050 1.29533 1.25139 1.34306 0.85711 0.77570 0.80498 0.79207 1.19276 1.20981 1.17281 1.21160 0.92921 0.98830 1.01256 0.89997 0.91040 0.90840 0.84309 0.85007 0.87600 0.89586 0.92964 0.90061 0.74824 0.92726 0.92735 0.91613 0.91587 0.96222 0.96364 0.92498 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.57 16 2 C -0.10 -1.78 5.88 -19.86 -0.12 -1.90 16 3 C -0.13 -2.40 9.70 22.27 0.22 -2.19 16 4 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 5 C -0.11 -2.69 7.93 22.27 0.18 -2.51 16 6 C -0.08 -1.68 4.40 -19.87 -0.09 -1.76 16 7 C -0.06 -1.22 2.90 -12.29 -0.04 -1.25 16 8 H 0.13 1.77 7.88 -2.39 -0.02 1.75 16 9 C -0.14 -1.99 8.90 71.98 0.64 -1.35 16 10 C 0.51 13.81 7.02 87.66 0.62 14.43 16 11 O -0.58 -20.99 15.11 -3.04 -0.05 -21.04 16 12 N -0.72 -18.04 5.45 -463.04 -2.52 -20.56 16 13 C 0.13 4.05 5.67 86.38 0.49 4.54 16 14 C -0.10 -3.56 5.27 30.59 0.16 -3.40 16 15 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 16 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 17 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 18 C 0.00 0.28 5.47 84.66 0.46 0.74 16 19 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 20 Si 0.95 44.58 27.47 68.60 1.88 46.47 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.25 -11.03 6.54 99.48 0.65 -10.37 16 24 C -0.12 -2.38 9.33 22.27 0.21 -2.17 16 25 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 27 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 28 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.11 2.70 7.52 -2.91 -0.02 2.67 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.89 7.39 -2.38 -0.02 0.87 16 33 H 0.08 0.94 7.56 -2.39 -0.02 0.92 16 34 H 0.41 7.84 7.89 -92.71 -0.73 7.11 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 40 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.14 2.01 7.95 -2.91 -0.02 1.99 16 Total: -1.00 -72.90 347.37 3.85 -69.04 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.20 Total: 15.30 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 4.04 Total: -30.20 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.22 Total: -79.57 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.05 Total: -21.04 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Total: -72.90 3.85 -69.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351698491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.618 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds