Wall clock time and date at job start Mon Mar 30 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00010 * 2 1 4 4 C 1.38211 * 120.00113 * 180.25649 * 3 2 1 5 5 C 1.38261 * 120.00022 * 359.78451 * 4 3 2 6 6 C 1.38214 * 119.99661 * 359.95720 * 5 4 3 7 7 C 1.50703 * 119.99514 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46446 * 180.02562 * 7 6 5 9 9 C 1.52990 * 109.47608 * 60.02074 * 7 6 5 10 10 C 1.50700 * 109.47063 * 300.01703 * 7 6 5 11 11 O 1.21281 * 120.00031 * 0.02562 * 10 7 6 12 12 N 1.34771 * 119.99947 * 180.02562 * 10 7 6 13 13 C 1.46508 * 119.99988 * 180.02562 * 12 10 7 14 14 C 1.53000 * 109.47075 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47137 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47495 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99699 * 0.02562 * 16 15 14 18 18 C 1.37867 * 120.00186 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00531 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00090 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47191 * 59.99874 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46637 * 300.00087 * 20 18 16 24 24 C 1.38211 * 120.00162 * 179.75882 * 2 1 3 25 25 H 1.09001 * 109.47236 * 270.23378 * 1 2 3 26 26 H 1.09000 * 109.47285 * 30.23570 * 1 2 3 27 27 H 1.08993 * 109.47149 * 150.24066 * 1 2 3 28 28 H 1.08004 * 120.00386 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00363 * 179.76462 * 4 3 2 30 30 H 1.07997 * 119.99874 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47071 * 59.99890 * 9 7 6 32 32 H 1.08998 * 109.47561 * 179.97438 * 9 7 6 33 33 H 1.09005 * 109.47248 * 300.00181 * 9 7 6 34 34 H 0.97003 * 120.00462 * 0.02562 * 12 10 7 35 35 H 1.08999 * 109.46690 * 300.00104 * 13 12 10 36 36 H 1.08995 * 109.46739 * 60.00226 * 13 12 10 37 37 H 1.09002 * 109.46807 * 300.00094 * 14 13 12 38 38 H 1.09005 * 109.47331 * 59.99861 * 14 13 12 39 39 H 1.09000 * 109.47570 * 300.00286 * 15 14 13 40 40 H 1.09005 * 109.47090 * 59.99755 * 15 14 13 41 41 H 0.97001 * 120.00891 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00200 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0054 5 6 4.2717 0.0000 -0.0062 6 6 3.5806 -1.1969 -0.0008 7 6 4.3342 -2.5020 -0.0012 8 1 3.6258 -3.3305 0.0031 9 6 5.2185 -2.5807 1.2447 10 6 5.1958 -2.5842 -1.2348 11 8 5.1981 -1.6726 -2.0347 12 7 5.9638 -3.6707 -1.4492 13 6 6.8018 -3.7504 -2.6483 14 6 7.5658 -5.0760 -2.6493 15 6 8.4406 -5.1595 -3.9018 16 6 9.1936 -6.4649 -3.9026 17 1 9.0612 -7.1651 -3.0911 18 6 10.0515 -6.7652 -4.9392 19 7 10.2132 -5.9123 -5.9271 20 14 10.9844 -8.3836 -4.9405 21 1 10.0187 -9.5116 -4.9359 22 1 11.8344 -8.4640 -6.1555 23 1 11.8422 -8.4614 -3.7307 24 6 2.1980 -1.1969 0.0050 25 1 -0.3634 0.0042 1.0277 26 1 -0.3634 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5101 28 1 1.6583 2.1327 0.0004 29 1 4.1204 2.1327 -0.0092 30 1 5.3516 0.0001 -0.0108 31 1 4.5953 -2.5213 2.1370 32 1 5.7632 -3.5248 1.2447 33 1 5.9269 -1.7521 1.2405 34 1 5.9617 -4.4001 -0.8097 35 1 6.1720 -3.6937 -3.5361 36 1 7.5104 -2.9222 -2.6519 37 1 8.1955 -5.1331 -1.7614 38 1 6.8569 -5.9040 -2.6458 39 1 7.8106 -5.1025 -4.7895 40 1 9.1495 -4.3315 -3.9057 41 1 10.8171 -6.1234 -6.6563 42 1 1.6581 -2.1323 0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351698492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:37 Heat of formation + Delta-G solvation = -45.879389 kcal Electronic energy + Delta-G solvation = -20186.282339 eV Core-core repulsion = 17129.819091 eV Total energy + Delta-G solvation = -3056.463248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31261 -38.83579 -35.46127 -34.54729 -33.31411 -32.40536 -31.18912 -29.75809 -27.01536 -26.75255 -24.81356 -23.16155 -22.20998 -21.20717 -20.63530 -19.29959 -16.88591 -16.79266 -16.37727 -15.70045 -15.58911 -15.07541 -14.72424 -14.44585 -14.05192 -13.96368 -13.59282 -13.53427 -13.15405 -12.75906 -12.45377 -12.36189 -12.28607 -11.90023 -11.84775 -11.80333 -11.56576 -11.07110 -10.97722 -10.88568 -10.72960 -10.62777 -9.86959 -9.79827 -9.36088 -9.13787 -8.85708 -8.75469 -8.62978 -8.37693 -6.02254 -4.05668 1.26513 1.34092 2.80059 3.31436 3.34379 3.36420 3.38907 3.77481 4.38777 4.43600 4.60518 4.75917 4.90414 4.93613 5.03031 5.09359 5.21079 5.33295 5.34748 5.37945 5.43111 5.57905 5.60558 5.64075 5.74154 5.77692 5.88525 5.96214 6.04221 6.16032 6.40835 6.47296 6.49695 6.55225 6.59442 6.83335 6.94109 6.99959 7.62514 7.72604 7.75340 7.96237 8.36501 8.42478 9.00833 9.58527 11.08991 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042105 B = 0.002603 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.845394 B =10753.795535 C =10868.872270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.088 4.088 6 C -0.060 4.060 7 C -0.074 4.074 8 H 0.102 0.898 9 C -0.140 4.140 10 C 0.511 3.489 11 O -0.534 6.534 12 N -0.726 5.726 13 C 0.117 3.883 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.113 4.113 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 10.389 16.405 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.106 4.106 6 C -0.061 4.061 7 C -0.095 4.095 8 H 0.120 0.880 9 C -0.198 4.198 10 C 0.296 3.704 11 O -0.411 6.411 12 N -0.377 5.377 13 C -0.006 4.006 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.131 4.131 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.873 11.073 15.627 25.525 hybrid contribution 0.640 -1.274 0.088 1.428 sum -16.233 9.799 15.715 24.627 Atomic orbital electron populations 1.20761 0.91338 1.02712 1.02068 1.19818 0.95886 0.93114 1.00473 1.20988 0.94272 0.97329 1.01449 1.21093 0.94247 0.97952 1.00369 1.20905 0.99894 0.91768 0.98036 1.19297 0.93191 0.93688 0.99899 1.20320 0.97477 0.97070 0.94624 0.87952 1.21793 0.99348 1.02899 0.95755 1.20416 0.80301 0.82437 0.87251 1.90723 1.65721 1.37820 1.46821 1.46205 1.45035 1.20391 1.26020 1.21639 0.93020 0.99873 0.86071 1.21884 0.98455 0.93539 1.01955 1.19025 0.93976 0.97272 0.91099 1.21164 1.24947 1.03245 1.06792 0.92701 1.25031 0.96901 0.96971 0.95565 1.69953 1.37292 1.35605 1.10443 0.86638 0.79849 0.84004 0.77376 1.20237 1.21265 1.20241 1.20857 0.93185 0.97611 1.01458 0.91384 0.91670 0.91632 0.86392 0.86172 0.86324 0.91328 0.91503 0.91773 0.76867 0.91848 0.91826 0.92740 0.92756 0.96299 0.96299 0.92852 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.95 5.88 -104.63 -0.62 -1.56 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 4 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 5 C -0.09 -1.09 7.93 -39.58 -0.31 -1.41 16 6 C -0.06 -0.72 4.40 -104.62 -0.46 -1.18 16 7 C -0.07 -0.79 2.90 -92.93 -0.27 -1.06 16 8 H 0.10 0.90 7.88 -51.93 -0.41 0.49 16 9 C -0.14 -1.20 8.90 37.15 0.33 -0.87 16 10 C 0.51 7.51 7.02 -10.99 -0.08 7.44 16 11 O -0.53 -10.11 15.11 5.56 0.08 -10.02 16 12 N -0.73 -10.26 5.45 -60.29 -0.33 -10.59 16 13 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 14 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 20 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.11 -1.23 9.33 -39.58 -0.37 -1.60 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.50 7.52 -52.49 -0.39 1.10 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.50 7.57 -51.93 -0.39 0.10 16 33 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 34 H 0.40 4.45 7.89 -40.82 -0.32 4.13 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.12 1.06 7.95 -52.49 -0.42 0.64 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -33.01 350.97 -9.08 -42.08 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.93 Total: 0.38 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.91 Total: -17.44 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.41 Total: -36.75 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.01 -9.08 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351698492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.796 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds