Wall clock time and date at job start Mon Mar 30 2020 01:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86790 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47224 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.47543 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47401 * 119.99802 * 3 2 1 7 7 C 1.39949 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99019 * 196.37541 * 7 2 1 9 9 C 1.41388 * 120.00260 * 16.37655 * 7 2 1 10 10 C 1.40720 * 120.24509 * 26.90324 * 9 7 2 11 11 C 1.37613 * 119.74417 * 180.23271 * 10 9 7 12 12 C 1.38640 * 120.24750 * 359.51313 * 11 10 9 13 13 C 1.50703 * 119.74510 * 180.27997 * 12 11 10 14 14 N 1.46904 * 109.47175 * 86.93329 * 13 12 11 15 15 C 1.46903 * 110.99693 * 284.81036 * 14 13 12 16 16 C 1.52993 * 109.47158 * 288.72475 * 15 14 13 17 17 O 1.42900 * 109.47442 * 66.30412 * 16 15 14 18 18 C 1.46896 * 111.00129 * 160.86033 * 14 13 12 19 19 C 1.52997 * 109.47186 * 189.99465 * 18 14 13 20 20 C 1.52999 * 117.49977 * 243.62255 * 19 18 14 21 21 C 1.52998 * 117.49824 * 174.99643 * 19 18 14 22 22 C 1.38628 * 120.50485 * 0.25843 * 12 11 10 23 23 C 1.37628 * 120.24469 * 359.97438 * 22 12 11 24 24 H 0.96998 * 119.99824 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.12706 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.87605 * 179.79429 * 11 10 9 27 27 H 1.09004 * 109.46859 * 206.92739 * 13 12 11 28 28 H 1.08999 * 109.47729 * 326.92522 * 13 12 11 29 29 H 1.09005 * 109.46795 * 48.72487 * 15 14 13 30 30 H 1.08998 * 109.47186 * 168.72008 * 15 14 13 31 31 H 1.09006 * 109.47193 * 186.30443 * 16 15 14 32 32 H 1.09000 * 109.47502 * 306.29711 * 16 15 14 33 33 H 0.96708 * 114.00190 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47300 * 309.99530 * 18 14 13 35 35 H 1.08998 * 109.47383 * 69.99506 * 18 14 13 36 36 H 1.09000 * 115.54852 * 29.33007 * 19 18 14 37 37 H 1.08992 * 117.49881 * 359.97438 * 20 19 18 38 38 H 1.09005 * 117.49642 * 145.02617 * 20 19 18 39 39 H 1.08996 * 117.50079 * 214.97785 * 21 19 18 40 40 H 1.08997 * 117.50087 * 0.02562 * 21 19 18 41 41 H 1.07995 * 119.87807 * 179.97438 * 22 12 11 42 42 H 1.07996 * 120.12290 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0551 -1.2308 0.2643 9 6 1.3441 -2.4118 -0.3441 10 6 0.2257 -2.3830 -1.1978 11 6 -0.4156 -3.5564 -1.5227 12 6 0.0423 -4.7648 -1.0204 13 6 -0.6648 -6.0436 -1.3887 14 7 -0.1137 -6.5630 -2.6475 15 6 -0.5964 -5.7829 -3.7949 16 6 -2.0783 -6.0832 -4.0286 17 8 -2.8431 -5.5950 -2.9246 18 6 -0.4272 -7.9887 -2.8109 19 6 0.3637 -8.5526 -3.9930 20 6 -0.4320 -9.0683 -5.1938 21 6 0.2647 -10.0565 -4.2562 22 6 1.1459 -4.8056 -0.1825 23 6 1.8000 -3.6440 0.1596 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1299 -1.4433 -1.5938 26 1 -1.2761 -3.5364 -2.1751 27 1 -0.5200 -6.7796 -0.5977 28 1 -1.7299 -5.8475 -1.5118 29 1 -0.4688 -4.7198 -3.5910 30 1 -0.0263 -6.0533 -4.6837 31 1 -2.4084 -5.5929 -4.9445 32 1 -2.2206 -7.1599 -4.1214 33 1 -3.7941 -5.7509 -3.0054 34 1 -0.1561 -8.5269 -1.9026 35 1 -1.4944 -8.1070 -2.9984 36 1 1.3197 -8.0686 -4.1927 37 1 -1.5189 -9.0063 -5.1414 38 1 0.0005 -8.9236 -6.1838 39 1 1.1554 -10.5619 -4.6294 40 1 -0.3642 -10.6442 -3.5874 41 1 1.4937 -5.7525 0.2033 42 1 2.6597 -3.6782 0.8122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352483278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:17 Heat of formation + Delta-G solvation = 1.785413 kcal Electronic energy + Delta-G solvation = -21319.903432 eV Core-core repulsion = 18265.507084 eV Total energy + Delta-G solvation = -3054.396347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.13665 -37.37592 -36.72656 -35.02839 -33.46541 -30.46583 -29.34078 -28.75746 -27.22151 -24.98665 -23.42204 -22.48913 -21.59651 -20.74223 -19.74179 -19.39019 -17.45888 -17.15887 -16.26531 -15.82349 -15.19174 -14.85124 -14.45568 -13.92156 -13.72833 -13.51293 -13.18348 -12.97280 -12.41726 -12.26989 -12.04709 -11.83145 -11.63932 -11.49436 -11.38117 -11.27062 -10.99389 -10.88904 -10.68997 -10.51615 -10.34221 -10.13941 -9.95678 -9.67400 -9.40959 -9.20405 -9.02434 -7.69793 -7.26611 -7.11219 -6.63241 -4.22560 2.87222 3.12191 3.15529 3.22253 3.28013 3.73773 4.02026 4.23197 4.42395 4.75042 4.81237 4.87686 5.01602 5.16398 5.32375 5.44403 5.50577 5.54613 5.69047 5.74640 5.77610 5.86452 5.91005 5.99560 6.15735 6.29548 6.32618 6.44230 6.53275 6.60281 6.75271 7.10227 7.20490 7.39535 7.52206 7.56843 7.63690 7.72353 7.77670 8.04630 8.18865 8.32887 8.44918 8.78071 9.02808 9.12225 10.32276 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.003900 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.106278 B = 7177.739755 C = 7524.285038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.469 4.469 8 H 0.074 0.926 9 C 0.111 3.889 10 C -0.165 4.165 11 C -0.091 4.091 12 C -0.191 4.191 13 C 0.098 3.902 14 N -0.522 5.522 15 C 0.053 3.947 16 C 0.035 3.965 17 O -0.552 6.552 18 C 0.078 3.922 19 C -0.139 4.139 20 C -0.187 4.187 21 C -0.182 4.182 22 C -0.079 4.079 23 C -0.227 4.227 24 H 0.278 0.722 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.363 0.637 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 -12.767 -8.649 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.499 4.499 8 H 0.092 0.908 9 C 0.109 3.891 10 C -0.184 4.184 11 C -0.110 4.110 12 C -0.193 4.193 13 C -0.027 4.027 14 N -0.245 5.245 15 C -0.076 4.076 16 C -0.044 4.044 17 O -0.358 6.358 18 C -0.050 4.050 19 C -0.157 4.157 20 C -0.224 4.224 21 C -0.219 4.219 22 C -0.097 4.097 23 C -0.246 4.246 24 H 0.089 0.911 25 H 0.130 0.870 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.210 0.790 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.741 -12.379 -8.388 15.414 hybrid contribution -1.024 0.482 -0.294 1.170 sum -4.765 -11.898 -8.682 15.480 Atomic orbital electron populations 1.69829 1.07452 1.28961 1.36292 1.25858 0.94696 1.01027 0.92428 0.86420 0.80126 0.80563 0.79846 1.18961 1.20481 1.19145 1.19519 0.97478 0.91210 1.41681 0.90755 1.17586 0.91161 0.91925 0.88413 1.21250 0.99504 0.96520 1.01133 1.20600 0.98424 0.92683 0.99276 1.18908 1.00876 0.92785 1.06718 1.21221 0.98373 0.94422 0.88699 1.62256 1.59025 1.00473 1.02706 1.22341 0.89675 1.01150 0.94432 1.23095 0.94648 0.97557 0.89102 1.86728 1.21631 1.83784 1.43650 1.21751 0.96330 0.90123 0.96791 1.22370 1.01385 0.95353 0.96603 1.23032 0.98882 1.05152 0.95350 1.22923 1.02886 0.92681 1.03425 1.20363 0.95316 0.96044 0.98015 1.20968 1.03789 0.93234 1.06646 0.91085 0.86997 0.89191 0.93098 0.90652 0.88794 0.90208 0.94088 0.93550 0.79014 0.90999 0.94751 0.86988 0.89362 0.89087 0.88957 0.89114 0.89840 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.41 11.04 55.55 0.61 -20.79 16 2 C 0.08 1.99 5.15 -17.34 -0.09 1.90 16 3 Si 0.91 19.31 29.59 -169.99 -5.03 14.28 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.47 -12.92 9.05 -37.74 -0.34 -13.27 16 8 H 0.07 1.98 7.90 -52.48 -0.41 1.56 16 9 C 0.11 3.09 5.55 -106.83 -0.59 2.49 16 10 C -0.16 -4.42 8.68 -38.87 -0.34 -4.76 16 11 C -0.09 -2.19 8.17 -39.66 -0.32 -2.51 16 12 C -0.19 -4.31 5.23 -104.33 -0.55 -4.86 16 13 C 0.10 1.82 5.02 -4.97 -0.02 1.80 16 14 N -0.52 -8.47 4.63 -236.07 -1.09 -9.57 16 15 C 0.05 0.79 5.54 -3.83 -0.02 0.77 16 16 C 0.04 0.44 6.76 37.15 0.25 0.69 16 17 O -0.55 -7.53 10.31 -35.23 -0.36 -7.89 16 18 C 0.08 1.03 4.83 -3.83 -0.02 1.01 16 19 C -0.14 -1.58 4.93 -90.62 -0.45 -2.03 16 20 C -0.19 -1.77 9.97 -26.73 -0.27 -2.04 16 21 C -0.18 -1.72 10.25 -26.73 -0.27 -1.99 16 22 C -0.08 -1.85 9.66 -39.66 -0.38 -2.23 16 23 C -0.23 -5.83 9.80 -38.87 -0.38 -6.21 16 24 H 0.28 6.81 8.30 -40.82 -0.34 6.48 16 25 H 0.11 3.11 6.29 -52.49 -0.33 2.78 16 26 H 0.09 2.04 7.25 -52.48 -0.38 1.66 16 27 H 0.05 0.91 7.66 -51.93 -0.40 0.52 16 28 H 0.08 1.40 4.54 -51.90 -0.24 1.16 16 29 H 0.09 1.70 5.43 -51.93 -0.28 1.42 16 30 H 0.08 1.09 7.53 -51.93 -0.39 0.70 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.52 4.98 -51.93 -0.26 0.26 16 33 H 0.36 3.28 9.12 45.59 0.42 3.69 16 34 H 0.07 0.96 7.83 -51.93 -0.41 0.55 16 35 H 0.03 0.43 5.44 -51.93 -0.28 0.15 16 36 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.09 0.80 7.41 -51.93 -0.38 0.41 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -29.29 331.99 -10.11 -39.40 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.44 Total: 10.80 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -3.79 Total: -31.23 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: -0.48 Total: -30.36 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.36 Total: -7.89 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.29 -10.11 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352483278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.186 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds