Wall clock time and date at job start Mon Mar 30 2020 01:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86790 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47224 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.47543 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47401 * 119.99802 * 3 2 1 7 7 C 1.39949 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99019 * 196.37541 * 7 2 1 9 9 C 1.41388 * 120.00260 * 16.37655 * 7 2 1 10 10 C 1.40720 * 120.24509 * 26.90324 * 9 7 2 11 11 C 1.37613 * 119.74417 * 180.23271 * 10 9 7 12 12 C 1.38640 * 120.24750 * 359.51313 * 11 10 9 13 13 C 1.50703 * 119.74510 * 180.27997 * 12 11 10 14 14 N 1.46904 * 109.47175 * 86.93329 * 13 12 11 15 15 C 1.46903 * 110.99693 * 284.81036 * 14 13 12 16 16 C 1.52993 * 109.47158 * 288.72475 * 15 14 13 17 17 O 1.42900 * 109.47442 * 66.30412 * 16 15 14 18 18 C 1.46896 * 111.00129 * 160.86033 * 14 13 12 19 19 C 1.52997 * 109.47186 * 189.99465 * 18 14 13 20 20 C 1.52999 * 117.49977 * 243.62255 * 19 18 14 21 21 C 1.52998 * 117.49824 * 174.99643 * 19 18 14 22 22 C 1.38628 * 120.50485 * 0.25843 * 12 11 10 23 23 C 1.37628 * 120.24469 * 359.97438 * 22 12 11 24 24 H 0.96998 * 119.99824 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.12706 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.87605 * 179.79429 * 11 10 9 27 27 H 1.09004 * 109.46859 * 206.92739 * 13 12 11 28 28 H 1.08999 * 109.47729 * 326.92522 * 13 12 11 29 29 H 1.09005 * 109.46795 * 48.72487 * 15 14 13 30 30 H 1.08998 * 109.47186 * 168.72008 * 15 14 13 31 31 H 1.09006 * 109.47193 * 186.30443 * 16 15 14 32 32 H 1.09000 * 109.47502 * 306.29711 * 16 15 14 33 33 H 0.96708 * 114.00190 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47300 * 309.99530 * 18 14 13 35 35 H 1.08998 * 109.47383 * 69.99506 * 18 14 13 36 36 H 1.09000 * 115.54852 * 29.33007 * 19 18 14 37 37 H 1.08992 * 117.49881 * 359.97438 * 20 19 18 38 38 H 1.09005 * 117.49642 * 145.02617 * 20 19 18 39 39 H 1.08996 * 117.50079 * 214.97785 * 21 19 18 40 40 H 1.08997 * 117.50087 * 0.02562 * 21 19 18 41 41 H 1.07995 * 119.87807 * 179.97438 * 22 12 11 42 42 H 1.07996 * 120.12290 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0551 -1.2308 0.2643 9 6 1.3441 -2.4118 -0.3441 10 6 0.2257 -2.3830 -1.1978 11 6 -0.4156 -3.5564 -1.5227 12 6 0.0423 -4.7648 -1.0204 13 6 -0.6648 -6.0436 -1.3887 14 7 -0.1137 -6.5630 -2.6475 15 6 -0.5964 -5.7829 -3.7949 16 6 -2.0783 -6.0832 -4.0286 17 8 -2.8431 -5.5950 -2.9246 18 6 -0.4272 -7.9887 -2.8109 19 6 0.3637 -8.5526 -3.9930 20 6 -0.4320 -9.0683 -5.1938 21 6 0.2647 -10.0565 -4.2562 22 6 1.1459 -4.8056 -0.1825 23 6 1.8000 -3.6440 0.1596 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1299 -1.4433 -1.5938 26 1 -1.2761 -3.5364 -2.1751 27 1 -0.5200 -6.7796 -0.5977 28 1 -1.7299 -5.8475 -1.5118 29 1 -0.4688 -4.7198 -3.5910 30 1 -0.0263 -6.0533 -4.6837 31 1 -2.4084 -5.5929 -4.9445 32 1 -2.2206 -7.1599 -4.1214 33 1 -3.7941 -5.7509 -3.0054 34 1 -0.1561 -8.5269 -1.9026 35 1 -1.4944 -8.1070 -2.9984 36 1 1.3197 -8.0686 -4.1927 37 1 -1.5189 -9.0063 -5.1414 38 1 0.0005 -8.9236 -6.1838 39 1 1.1554 -10.5619 -4.6294 40 1 -0.3642 -10.6442 -3.5874 41 1 1.4937 -5.7525 0.2033 42 1 2.6597 -3.6782 0.8122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352483278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:16 Heat of formation + Delta-G solvation = -16.374095 kcal Electronic energy + Delta-G solvation = -21320.690887 eV Core-core repulsion = 18265.507084 eV Total energy + Delta-G solvation = -3055.183803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37018 -39.04938 -37.70551 -36.30435 -35.28166 -32.24046 -31.18205 -30.09045 -28.75733 -26.47691 -24.86344 -23.22614 -23.03858 -22.53170 -21.31748 -20.56656 -19.16045 -18.48906 -17.32762 -17.12265 -16.86642 -16.20126 -15.68896 -15.52884 -15.26125 -14.95697 -14.46895 -14.26802 -14.07601 -13.74869 -13.45905 -13.29520 -13.18502 -12.88668 -12.72977 -12.53223 -12.37433 -12.31775 -12.26797 -11.97729 -11.92201 -11.38908 -11.16725 -11.04694 -10.96998 -10.81171 -10.64642 -9.28143 -9.14787 -8.84835 -8.58050 -6.28655 1.02266 1.21326 1.37744 1.49371 1.54686 2.23100 2.72087 2.95299 3.21374 3.45631 3.84242 3.91445 4.09554 4.11469 4.18983 4.28257 4.39091 4.49705 4.55734 4.62444 4.63472 4.70824 4.80202 4.82512 4.87791 4.96863 5.05959 5.09856 5.17877 5.22001 5.30659 5.31687 5.42114 5.44298 5.56810 5.78555 6.05006 6.15587 6.24481 6.38198 6.46072 6.48244 6.76859 6.94054 6.99828 7.10936 8.39732 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030424 B = 0.003900 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.106278 B = 7177.739755 C = 7524.285038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.509 4.509 8 H 0.071 0.929 9 C 0.079 3.921 10 C -0.188 4.188 11 C -0.088 4.088 12 C -0.179 4.179 13 C 0.105 3.895 14 N -0.536 5.536 15 C 0.050 3.950 16 C 0.043 3.957 17 O -0.578 6.578 18 C 0.084 3.916 19 C -0.156 4.156 20 C -0.176 4.176 21 C -0.172 4.172 22 C -0.084 4.084 23 C -0.243 4.243 24 H 0.286 0.714 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.384 0.616 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.330 -14.310 -9.692 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.539 4.539 8 H 0.089 0.911 9 C 0.076 3.924 10 C -0.207 4.207 11 C -0.107 4.107 12 C -0.181 4.181 13 C -0.021 4.021 14 N -0.259 5.259 15 C -0.078 4.078 16 C -0.036 4.036 17 O -0.387 6.387 18 C -0.044 4.044 19 C -0.175 4.175 20 C -0.212 4.212 21 C -0.209 4.209 22 C -0.102 4.102 23 C -0.263 4.263 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.445 -13.950 -9.440 17.421 hybrid contribution -0.876 0.791 -0.017 1.181 sum -5.321 -13.159 -9.458 17.057 Atomic orbital electron populations 1.69890 1.08939 1.30311 1.36723 1.26727 0.95512 1.04364 0.91312 0.85270 0.78759 0.75761 0.79965 1.18600 1.19117 1.18422 1.19770 0.97667 0.92559 1.43930 0.91068 1.17917 0.92079 0.92960 0.89398 1.21206 1.00445 0.96816 1.02253 1.20735 0.98424 0.92464 0.99060 1.19381 0.99894 0.94177 1.04635 1.21098 0.98154 0.92549 0.90325 1.62108 1.59566 1.02309 1.01925 1.22294 0.92196 0.98872 0.94419 1.22986 0.92588 0.98742 0.89282 1.86611 1.23549 1.84142 1.44377 1.21742 0.97259 0.87836 0.97532 1.22185 1.01053 0.96954 0.97320 1.23106 0.99241 1.03886 0.95008 1.23010 1.03307 0.91473 1.03124 1.20678 0.95311 0.96361 0.97882 1.21168 1.04411 0.93603 1.07120 0.90379 0.88877 0.88051 0.92307 0.90183 0.92340 0.88959 0.92511 0.91638 0.76556 0.91331 0.93583 0.88654 0.88444 0.88297 0.88145 0.88275 0.87307 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.93 11.04 21.83 0.24 -45.69 16 2 C 0.03 1.84 5.15 85.26 0.44 2.28 16 3 Si 0.98 40.24 29.59 68.60 2.03 42.27 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.51 -29.24 9.05 23.46 0.21 -29.03 16 8 H 0.07 3.95 7.90 -2.91 -0.02 3.93 16 9 C 0.08 4.53 5.55 -21.29 -0.12 4.41 16 10 C -0.19 -10.50 8.68 22.73 0.20 -10.30 16 11 C -0.09 -4.32 8.17 22.22 0.18 -4.14 16 12 C -0.18 -8.05 5.23 -19.67 -0.10 -8.16 16 13 C 0.10 3.74 5.02 85.56 0.43 4.17 16 14 N -0.54 -16.58 4.63 -900.79 -4.17 -20.76 16 15 C 0.05 1.46 5.54 86.30 0.48 1.94 16 16 C 0.04 0.95 6.76 71.98 0.49 1.44 16 17 O -0.58 -14.48 10.31 -148.98 -1.54 -16.02 16 18 C 0.08 2.00 4.83 86.30 0.42 2.41 16 19 C -0.16 -3.21 4.93 -10.80 -0.05 -3.26 16 20 C -0.18 -2.74 9.97 30.60 0.31 -2.44 16 21 C -0.17 -2.72 10.25 30.60 0.31 -2.41 16 22 C -0.08 -3.94 9.66 22.22 0.21 -3.73 16 23 C -0.24 -12.87 9.80 22.73 0.22 -12.65 16 24 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 25 H 0.09 5.46 6.29 -2.91 -0.02 5.44 16 26 H 0.10 4.66 7.25 -2.91 -0.02 4.64 16 27 H 0.06 1.99 7.66 -2.39 -0.02 1.98 16 28 H 0.08 2.83 4.54 -2.37 -0.01 2.82 16 29 H 0.06 2.12 5.43 -2.38 -0.01 2.10 16 30 H 0.09 2.39 7.53 -2.39 -0.02 2.38 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.07 1.22 4.98 -2.39 -0.01 1.20 16 33 H 0.38 5.94 9.12 -74.00 -0.67 5.26 16 34 H 0.07 1.67 7.83 -2.39 -0.02 1.65 16 35 H 0.05 1.00 5.44 -2.39 -0.01 0.98 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.10 1.37 7.41 -2.39 -0.02 1.35 16 38 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.09 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -65.20 331.99 0.53 -64.67 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.35 Total: 35.00 kcal Atomic # 6 Polarization: -63.09 SS G_CDS: 3.62 Total: -59.47 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -3.93 Total: -66.45 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.54 Total: -16.02 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -65.20 0.53 -64.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352483278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.291 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds