Wall clock time and date at job start Mon Mar 30 2020 02:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38256 * 119.99859 * 2 1 4 4 C 1.38220 * 119.99875 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99937 * 0.27713 * 4 3 2 6 6 C 1.38213 * 119.99844 * 359.51191 * 5 4 3 7 7 C 1.50701 * 119.99987 * 180.25380 * 6 5 4 8 8 N 1.46506 * 109.47070 * 266.85065 * 7 6 5 9 9 C 1.46505 * 119.99645 * 272.78775 * 8 7 6 10 10 C 1.53003 * 109.46805 * 275.54701 * 9 8 7 11 11 C 1.53004 * 109.46575 * 174.80552 * 10 9 8 12 12 C 1.52990 * 109.47291 * 294.80645 * 10 9 8 13 13 C 1.34771 * 120.00318 * 92.78585 * 8 7 6 14 14 O 1.21689 * 119.99809 * 359.97438 * 13 8 7 15 15 C 1.46375 * 120.00299 * 180.02562 * 13 8 7 16 16 H 1.08001 * 119.99495 * 353.03029 * 15 13 8 17 17 C 1.40045 * 120.00068 * 173.03574 * 15 13 8 18 18 N 1.30676 * 120.00274 * 6.51832 * 17 15 13 19 19 Si 1.86801 * 119.99959 * 186.52390 * 17 15 13 20 20 H 1.48503 * 109.47110 * 94.97376 * 19 17 15 21 21 H 1.48498 * 109.47139 * 214.97402 * 19 17 15 22 22 H 1.48500 * 109.47112 * 334.97403 * 19 17 15 23 23 C 1.38220 * 120.00338 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46667 * 90.00472 * 1 2 3 25 25 H 1.09001 * 109.47204 * 209.99993 * 1 2 3 26 26 H 1.08996 * 109.47378 * 330.00425 * 1 2 3 27 27 H 1.08000 * 120.00211 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.99985 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.99736 * 179.72084 * 5 4 3 30 30 H 1.09000 * 109.47140 * 26.84550 * 7 6 5 31 31 H 1.08999 * 109.47474 * 146.84959 * 7 6 5 32 32 H 1.08998 * 109.46988 * 35.54834 * 9 8 7 33 33 H 1.09002 * 109.46951 * 155.55126 * 9 8 7 34 34 H 1.08995 * 109.47011 * 54.80923 * 10 9 8 35 35 H 1.09005 * 109.47223 * 60.00465 * 11 10 9 36 36 H 1.09001 * 109.46453 * 179.97438 * 11 10 9 37 37 H 1.08993 * 109.47619 * 299.99890 * 11 10 9 38 38 H 1.09000 * 109.47233 * 62.83722 * 12 10 9 39 39 H 1.09003 * 109.47400 * 182.83988 * 12 10 9 40 40 H 1.09002 * 109.47473 * 302.83947 * 12 10 9 41 41 H 0.96995 * 120.00326 * 180.02562 * 18 17 15 42 42 H 1.08007 * 119.99692 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 -0.0047 6 6 3.5807 -1.1970 -0.0003 7 6 4.3342 -2.5021 -0.0003 8 7 4.5083 -2.9655 -1.3792 9 6 3.4695 -3.7800 -2.0148 10 6 3.6717 -5.2491 -1.6381 11 6 2.5149 -6.0819 -2.1942 12 6 4.9910 -5.7501 -2.2288 13 6 5.6239 -2.6426 -2.0629 14 8 6.4864 -1.9657 -1.5350 15 6 5.7976 -3.1051 -3.4407 16 1 5.0883 -3.7963 -3.8717 17 6 6.8834 -2.6516 -4.2000 18 7 7.8099 -1.9181 -3.6421 19 14 7.0072 -3.0948 -6.0104 20 1 6.4313 -1.9979 -6.8291 21 1 8.4333 -3.2891 -6.3761 22 1 6.2554 -4.3499 -6.2653 23 6 2.1982 -1.1970 -0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6583 2.1327 -0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 0.0000 -0.0089 30 1 5.3114 -2.3574 0.4605 31 1 3.7725 -3.2459 0.5648 32 1 2.4887 -3.4489 -1.6735 33 1 3.5336 -3.6703 -3.0974 34 1 3.6997 -5.3453 -0.5528 35 1 2.4869 -5.9857 -3.2797 36 1 2.6592 -7.1285 -1.9262 37 1 1.5750 -5.7249 -1.7734 38 1 5.8194 -5.1903 -1.7946 39 1 5.1109 -6.8098 -2.0033 40 1 4.9829 -5.6073 -3.3093 41 1 8.5618 -1.6037 -4.1680 42 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355958582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:50 Heat of formation + Delta-G solvation = -48.001612 kcal Electronic energy + Delta-G solvation = -21886.728292 eV Core-core repulsion = 18830.173017 eV Total energy + Delta-G solvation = -3056.555275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66853 -39.48103 -37.09047 -35.19747 -34.33914 -33.40377 -32.10342 -29.03466 -27.96966 -27.60544 -27.17816 -25.86969 -23.05544 -21.96532 -21.24009 -20.51351 -18.35824 -17.65131 -17.34299 -16.44830 -16.29241 -16.07582 -15.92990 -15.30605 -15.18099 -14.55488 -14.35144 -14.12568 -13.94936 -13.63527 -13.54993 -13.28390 -13.08296 -13.03756 -12.79215 -12.67931 -12.62554 -12.54995 -12.18652 -12.12446 -11.96005 -11.81375 -11.74256 -11.61842 -11.24367 -10.88227 -9.86582 -9.60062 -9.40638 -8.99418 -8.23186 -6.71418 0.46694 0.52102 1.38035 1.38507 1.53146 2.24391 2.53027 2.73188 3.17645 3.67098 3.91751 3.96941 4.06591 4.10800 4.24656 4.28882 4.33277 4.44097 4.54936 4.71092 4.75295 4.79654 4.83774 4.86041 4.91348 4.95470 5.02330 5.08289 5.20110 5.22485 5.24428 5.34705 5.36049 5.40964 5.58214 5.61731 5.67974 5.70577 5.78204 5.94219 6.19106 6.24351 6.48571 6.96057 7.52416 8.56647 8.75826 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.006478 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.298035 B = 4321.235855 C = 5333.429178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.130 4.130 5 C -0.132 4.132 6 C -0.099 4.099 7 C 0.163 3.837 8 N -0.632 5.632 9 C 0.128 3.872 10 C -0.105 4.105 11 C -0.134 4.134 12 C -0.131 4.131 13 C 0.549 3.451 14 O -0.629 6.629 15 C -0.552 4.552 16 H 0.094 0.906 17 C 0.030 3.970 18 N -0.824 5.824 19 Si 0.980 3.020 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.245 1.245 23 C -0.114 4.114 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.147 0.853 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.021 0.979 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.269 0.731 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.295 -2.212 3.863 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.101 4.101 7 C 0.040 3.960 8 N -0.366 5.366 9 C 0.005 3.995 10 C -0.125 4.125 11 C -0.192 4.192 12 C -0.188 4.188 13 C 0.354 3.646 14 O -0.516 6.516 15 C -0.589 4.589 16 H 0.112 0.888 17 C -0.184 4.184 18 N -0.455 5.455 19 Si 0.801 3.199 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.167 1.167 23 C -0.132 4.132 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.164 0.836 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.671 -1.782 4.146 16.307 hybrid contribution 1.234 0.191 -0.668 1.416 sum -14.437 -1.591 3.477 14.935 Atomic orbital electron populations 1.20796 0.88442 1.03923 1.03034 1.20306 0.97858 0.92486 0.98781 1.21291 0.93299 0.98863 1.01137 1.21302 0.95499 0.97372 1.00588 1.21119 0.99063 0.93863 1.01008 1.20477 0.94979 0.95381 0.99217 1.19983 0.98291 0.92373 0.85391 1.47873 1.20702 1.55232 1.12768 1.21506 0.90122 0.89654 0.98205 1.21480 0.95826 0.95152 1.00031 1.21710 0.96966 0.99435 1.01068 1.21741 0.97093 0.99263 1.00713 1.18547 0.79709 0.79201 0.87098 1.90541 1.44684 1.44995 1.71371 1.21476 1.11237 1.29663 0.96487 0.88839 1.26867 0.93880 0.92951 1.04747 1.70212 1.08662 1.28262 1.38315 0.85256 0.78257 0.79957 0.76474 1.19255 1.20168 1.16749 1.21088 0.92262 0.98876 1.00981 0.90593 0.90355 0.90172 0.83567 0.85462 0.89630 0.93730 0.88902 0.90685 0.91453 0.91782 0.92706 0.91788 0.91217 0.95979 0.92603 0.93196 0.92120 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.01 71.24 0.71 -1.09 16 2 C -0.09 -2.47 5.88 -19.86 -0.12 -2.59 16 3 C -0.13 -3.53 9.70 22.27 0.22 -3.31 16 4 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 5 C -0.13 -5.46 9.69 22.27 0.22 -5.24 16 6 C -0.10 -3.77 5.46 -19.87 -0.11 -3.88 16 7 C 0.16 6.62 5.59 85.63 0.48 7.10 16 8 N -0.63 -28.42 2.26 -831.22 -1.88 -30.29 16 9 C 0.13 4.55 4.89 86.38 0.42 4.97 16 10 C -0.11 -3.18 3.12 -10.79 -0.03 -3.22 16 11 C -0.13 -2.97 9.19 71.98 0.66 -2.31 16 12 C -0.13 -4.71 7.76 71.98 0.56 -4.16 16 13 C 0.55 31.48 6.48 86.36 0.56 32.04 16 14 O -0.63 -42.09 14.59 -4.31 -0.06 -42.15 16 15 C -0.55 -30.65 7.25 24.83 0.18 -30.47 16 16 H 0.09 4.68 4.33 -2.91 -0.01 4.67 16 17 C 0.03 1.68 5.49 85.30 0.47 2.15 16 18 N -0.82 -51.16 11.86 21.84 0.26 -50.90 16 19 Si 0.98 41.59 29.56 68.60 2.03 43.62 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.24 -9.49 7.11 99.48 0.71 -8.78 16 23 C -0.11 -3.41 9.09 22.27 0.20 -3.21 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 26 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 27 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 28 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.09 4.18 8.06 -2.91 -0.02 4.15 16 30 H 0.04 2.10 7.26 -2.39 -0.02 2.09 16 31 H 0.09 3.04 7.98 -2.39 -0.02 3.02 16 32 H 0.07 2.22 7.43 -2.39 -0.02 2.21 16 33 H 0.07 2.61 5.88 -2.39 -0.01 2.60 16 34 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.02 0.97 6.59 -2.39 -0.02 0.95 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.87 6.60 -2.39 -0.02 1.86 16 41 H 0.27 15.31 8.29 -92.71 -0.77 14.54 16 42 H 0.14 3.40 7.67 -2.91 -0.02 3.38 16 Total: -1.00 -76.02 340.39 5.98 -70.04 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.99 Total: 27.07 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 4.64 Total: -17.38 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -1.62 Total: -81.20 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.06 Total: -42.15 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -76.02 5.98 -70.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355958582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.034 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds