Wall clock time and date at job start Mon Mar 30 2020 01:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38259 * 120.00105 * 2 1 4 4 C 1.38212 * 120.00336 * 180.23376 * 3 2 1 5 5 C 1.38261 * 119.99556 * 359.80989 * 4 3 2 6 6 C 1.38207 * 120.00286 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00324 * 179.79287 * 2 1 3 8 8 C 1.50699 * 119.99716 * 0.02562 * 7 2 1 9 9 C 1.53004 * 109.47122 * 299.57396 * 8 7 2 10 10 C 1.53005 * 109.47359 * 179.57760 * 8 7 2 11 11 C 1.50694 * 109.47429 * 59.57419 * 8 7 2 12 12 O 1.21284 * 120.00574 * 243.24141 * 11 8 7 13 13 N 1.34776 * 119.99965 * 63.24987 * 11 8 7 14 14 C 1.46509 * 119.99781 * 356.14567 * 13 11 8 15 15 C 1.46496 * 120.00320 * 175.87765 * 13 11 8 16 16 C 1.50705 * 109.47555 * 89.99525 * 15 13 11 17 17 H 1.08006 * 119.99194 * 0.02562 * 16 15 13 18 18 C 1.37870 * 120.00373 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00056 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00285 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46832 * 89.99992 * 20 18 16 22 22 H 1.48492 * 109.47178 * 209.99862 * 20 18 16 23 23 H 1.48504 * 109.46726 * 330.00332 * 20 18 16 24 24 H 1.09000 * 109.47283 * 274.24727 * 1 2 3 25 25 H 1.09007 * 109.47187 * 34.24634 * 1 2 3 26 26 H 1.09001 * 109.47032 * 154.24356 * 1 2 3 27 27 H 1.08001 * 120.00002 * 0.07063 * 3 2 1 28 28 H 1.07994 * 119.99878 * 179.83946 * 4 3 2 29 29 H 1.08002 * 119.99764 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.00467 * 180.02562 * 6 5 4 31 31 H 1.08994 * 109.47323 * 185.27025 * 9 8 7 32 32 H 1.09003 * 109.47007 * 305.26895 * 9 8 7 33 33 H 1.09003 * 109.46614 * 65.26677 * 9 8 7 34 34 H 1.08997 * 109.46706 * 305.60721 * 10 8 7 35 35 H 1.08998 * 109.46711 * 65.60269 * 10 8 7 36 36 H 1.08999 * 109.47561 * 185.60224 * 10 8 7 37 37 H 1.08997 * 109.46426 * 93.87474 * 14 13 11 38 38 H 1.08998 * 109.46988 * 213.87121 * 14 13 11 39 39 H 1.08989 * 109.47208 * 333.87347 * 14 13 11 40 40 H 1.09000 * 109.47426 * 209.99558 * 15 13 11 41 41 H 1.09008 * 109.46946 * 329.99582 * 15 13 11 42 42 H 0.96997 * 119.99854 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0049 5 6 4.2717 0.0000 -0.0058 6 6 3.5807 -1.1969 -0.0013 7 6 2.1981 -1.1969 0.0043 8 6 1.4446 -2.5020 0.0085 9 6 0.5725 -2.5834 1.2630 10 6 2.4388 -3.6650 0.0022 11 6 0.5708 -2.5815 -1.2167 12 8 -0.6353 -2.6331 -1.0992 13 7 1.1295 -2.5954 -2.4431 14 6 2.5798 -2.4482 -2.5891 15 6 0.2872 -2.7636 -3.6299 16 6 -0.1594 -1.4119 -4.1247 17 1 0.1534 -0.5171 -3.6070 18 6 -0.9671 -1.3177 -5.2380 19 7 -1.3483 -2.4074 -5.8681 20 14 -1.5213 0.3577 -5.8509 21 1 -0.5334 0.8781 -6.8300 22 1 -2.8479 0.2312 -6.5059 23 1 -1.6228 1.2955 -4.7039 24 1 -0.3634 0.0761 1.0248 25 1 -0.3634 0.8495 -0.5784 26 1 -0.3633 -0.9256 -0.4466 27 1 1.6583 2.1327 0.0012 28 1 4.1203 2.1327 -0.0075 29 1 5.3517 0.0000 -0.0100 30 1 4.1206 -2.1322 -0.0016 31 1 0.1000 -3.5643 1.3140 32 1 1.1924 -2.4323 2.1468 33 1 -0.1960 -1.8115 1.2219 34 1 3.1246 -3.5520 -0.8375 35 1 3.0031 -3.6655 0.9347 36 1 1.8970 -4.6057 -0.0952 37 1 3.0423 -3.4342 -2.6328 38 1 2.7991 -1.9030 -3.5070 39 1 2.9768 -1.8982 -1.7360 40 1 0.8568 -3.2665 -4.4114 41 1 -0.5861 -3.3634 -3.3736 42 1 -1.9163 -2.3410 -6.6516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356454174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:52 Heat of formation + Delta-G solvation = -14.714392 kcal Electronic energy + Delta-G solvation = -22763.546020 eV Core-core repulsion = 19708.434188 eV Total energy + Delta-G solvation = -3055.111833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.20341 -39.67480 -36.79412 -36.21050 -34.65247 -33.66300 -30.80638 -29.93495 -28.39608 -27.71893 -27.23440 -25.71951 -23.94446 -22.34083 -21.94031 -19.67608 -18.71158 -18.07638 -17.27521 -17.03827 -16.46676 -16.35024 -15.86291 -15.50566 -15.11803 -14.94262 -14.59374 -14.20360 -14.02680 -13.88507 -13.59265 -13.43238 -13.19877 -13.13289 -12.99177 -12.82779 -12.72648 -12.64414 -12.54626 -12.46340 -12.24148 -11.99245 -11.76131 -11.59048 -11.31864 -10.66424 -10.61797 -9.62128 -9.37013 -9.33799 -8.24111 -6.38015 0.43080 0.50538 1.31829 1.34774 1.45158 1.81165 2.29869 2.44488 2.84743 3.04909 3.61612 3.69899 3.85024 4.05836 4.13257 4.16364 4.29505 4.43505 4.45733 4.60814 4.63890 4.69545 4.75911 4.78671 4.84783 4.87535 4.90996 4.96912 5.01271 5.06165 5.13842 5.20628 5.26587 5.28282 5.44035 5.56035 5.60658 5.65870 5.77682 5.85525 6.05192 6.15435 6.68130 6.78554 7.26607 7.46470 8.82856 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.006899 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.024674 B = 4057.561680 C = 4573.097782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.083 4.083 8 C -0.036 4.036 9 C -0.131 4.131 10 C -0.152 4.152 11 C 0.514 3.486 12 O -0.586 6.586 13 N -0.599 5.599 14 C 0.053 3.947 15 C 0.259 3.741 16 C -0.534 4.534 17 H 0.047 0.953 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.962 3.038 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.275 1.275 24 H 0.080 0.920 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.146 0.854 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.022 0.978 41 H -0.001 1.001 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.012 3.246 14.185 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.132 4.132 7 C -0.084 4.084 8 C -0.040 4.040 9 C -0.188 4.188 10 C -0.209 4.209 11 C 0.303 3.697 12 O -0.469 6.469 13 N -0.329 5.329 14 C -0.088 4.088 15 C 0.138 3.862 16 C -0.573 4.573 17 H 0.065 0.935 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.787 3.213 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.200 1.200 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.141 0.859 28 H 0.164 0.836 29 H 0.175 0.825 30 H 0.176 0.824 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.040 0.960 41 H 0.017 0.983 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.307 3.141 14.051 20.298 hybrid contribution -1.199 0.737 -0.912 1.677 sum 13.108 3.878 13.138 18.960 Atomic orbital electron populations 1.21488 0.92972 1.04419 1.02271 1.19884 0.95541 0.93892 0.99630 1.21218 0.95546 0.97016 1.01470 1.21464 0.93344 0.99765 0.98976 1.21488 1.01390 0.91522 0.99602 1.21399 0.92061 1.00386 0.99364 1.19431 0.94520 0.92203 1.02225 1.19746 0.95879 0.95548 0.92789 1.21859 0.99310 1.02632 0.95039 1.22239 0.98360 0.95068 1.05200 1.21011 0.88372 0.75119 0.85188 1.90573 1.17260 1.52196 1.86859 1.48044 1.08857 1.69689 1.06294 1.22614 0.79338 1.02460 1.04423 1.18761 0.89394 0.95811 0.82224 1.21601 1.31068 0.93105 1.11540 0.93514 1.25801 0.95737 1.00762 0.96670 1.70042 1.36583 1.29548 1.20568 0.85497 0.78124 0.79353 0.78375 1.18803 1.20322 1.20048 0.90152 0.93500 0.89894 0.85882 0.83649 0.82542 0.82429 0.92511 0.89504 0.92479 0.89726 0.88035 0.92586 0.90753 0.92618 0.87348 0.95990 0.98309 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.68 8.05 71.23 0.57 -5.11 16 2 C -0.09 -2.84 5.67 -19.87 -0.11 -2.95 16 3 C -0.13 -3.61 9.72 22.27 0.22 -3.40 16 4 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 5 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 6 C -0.11 -2.38 6.90 22.27 0.15 -2.22 16 7 C -0.08 -2.35 3.38 -19.87 -0.07 -2.42 16 8 C -0.04 -1.11 0.49 -53.67 -0.03 -1.14 16 9 C -0.13 -3.79 7.54 71.98 0.54 -3.25 16 10 C -0.15 -3.40 6.82 71.98 0.49 -2.91 16 11 C 0.51 22.20 4.87 87.66 0.43 22.63 16 12 O -0.59 -30.87 13.60 -3.04 -0.04 -30.91 16 13 N -0.60 -26.77 2.85 -851.12 -2.43 -29.20 16 14 C 0.05 1.77 8.65 127.77 1.11 2.88 16 15 C 0.26 14.52 5.15 85.64 0.44 14.96 16 16 C -0.53 -31.94 9.39 25.60 0.24 -31.70 16 17 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 18 C 0.01 0.54 5.46 84.65 0.46 1.01 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 20 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 21 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H 0.08 2.54 7.40 -2.39 -0.02 2.52 16 25 H 0.05 1.75 8.11 -2.38 -0.02 1.73 16 26 H 0.08 3.65 2.68 -2.39 -0.01 3.65 16 27 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 29 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 30 H 0.16 2.31 5.89 -2.91 -0.02 2.29 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.87 4.69 -2.39 -0.01 1.86 16 34 H 0.08 1.71 3.86 -2.39 -0.01 1.70 16 35 H 0.10 1.57 7.83 -2.39 -0.02 1.55 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 2.02 7.15 -2.39 -0.02 2.00 16 38 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 39 H 0.11 3.05 2.27 -2.39 -0.01 3.05 16 40 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 41 H 0.00 -0.08 7.48 -2.38 -0.02 -0.09 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -75.60 321.04 5.76 -69.84 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.02 Total: 16.71 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.89 Total: -17.85 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -2.14 Total: -86.15 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.04 Total: -30.91 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -75.60 5.76 -69.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356454174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.130 kcal (2) G-P(sol) polarization free energy of solvation -75.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds