Wall clock time and date at job start Mon Mar 30 2020 02:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 120.00453 * 2 1 4 4 C 1.38230 * 120.00086 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00079 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00201 * 359.97438 * 4 3 2 7 7 C 1.38235 * 119.99987 * 0.02562 * 6 4 3 8 8 C 1.50703 * 120.00193 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.47152 * 339.99970 * 8 7 6 10 10 C 1.53000 * 109.46912 * 100.00198 * 8 7 6 11 11 N 1.46500 * 109.47155 * 219.99968 * 8 7 6 12 12 C 1.34779 * 119.99793 * 154.99862 * 11 8 7 13 13 O 1.21279 * 120.00185 * 0.02562 * 12 11 8 14 14 C 1.50702 * 119.99614 * 179.97438 * 12 11 8 15 15 C 1.53000 * 109.46917 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47208 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00040 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00122 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99744 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47297 * 59.99452 * 20 18 16 22 22 H 1.48499 * 109.47152 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46799 * 299.99707 * 20 18 16 24 24 C 1.38233 * 120.00087 * 0.25640 * 7 6 4 25 25 H 1.09003 * 109.47089 * 90.00304 * 1 2 3 26 26 H 1.08995 * 109.47377 * 210.00495 * 1 2 3 27 27 H 1.08998 * 109.47040 * 330.00858 * 1 2 3 28 28 H 1.08003 * 119.99956 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47462 * 269.98017 * 5 4 3 30 30 H 1.08998 * 109.47268 * 29.97540 * 5 4 3 31 31 H 1.08996 * 109.47383 * 149.97484 * 5 4 3 32 32 H 1.08003 * 120.00511 * 180.02562 * 6 4 3 33 33 H 1.08992 * 109.47399 * 59.99914 * 10 8 7 34 34 H 1.09004 * 109.46724 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47194 * 299.99742 * 10 8 7 36 36 H 0.97004 * 120.00223 * 334.99953 * 11 8 7 37 37 H 1.09002 * 109.47423 * 300.00169 * 14 12 11 38 38 H 1.09002 * 109.46795 * 60.00420 * 14 12 11 39 39 H 1.09002 * 109.47125 * 300.00244 * 15 14 12 40 40 H 1.09002 * 109.47464 * 60.00088 * 15 14 12 41 41 H 0.97004 * 119.99561 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.00479 * 179.72732 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.3342 2.5020 0.0000 6 6 4.2717 -0.0002 0.0016 7 6 3.5805 -1.1973 0.0016 8 6 4.3339 -2.5025 0.0022 9 1 5.3521 -2.3344 -0.3489 10 6 4.3713 -3.0691 1.4229 11 7 3.6620 -3.4546 -0.8857 12 6 4.3603 -4.4628 -1.4448 13 8 5.5446 -4.5820 -1.2125 14 6 3.6690 -5.4425 -2.3577 15 6 4.6798 -6.4789 -2.8526 16 6 3.9887 -7.4583 -3.7660 17 1 2.9341 -7.3519 -3.9731 18 6 4.7027 -8.4902 -4.3372 19 7 5.9870 -8.6195 -4.0854 20 14 3.8462 -9.7038 -5.4699 21 1 3.2738 -8.9774 -6.6317 22 1 4.8273 -10.7098 -5.9502 23 1 2.7568 -10.3887 -4.7287 24 6 2.1982 -1.1973 -0.0048 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1324 -0.0004 29 1 4.5166 2.8158 -1.0278 30 1 3.7448 3.2621 0.5126 31 1 5.2862 2.3721 0.5146 32 1 5.3517 -0.0003 0.0024 33 1 3.3533 -3.2371 1.7740 34 1 4.9167 -4.0129 1.4234 35 1 4.8712 -2.3607 2.0836 36 1 2.7147 -3.3594 -1.0712 37 1 2.8704 -5.9458 -1.8126 38 1 3.2474 -4.9096 -3.2100 39 1 5.4787 -5.9760 -3.3975 40 1 5.1010 -7.0117 -2.0001 41 1 6.4894 -9.3453 -4.4876 42 1 1.6581 -2.1326 -0.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360168208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:55 Heat of formation + Delta-G solvation = -44.816040 kcal Electronic energy + Delta-G solvation = -20444.453978 eV Core-core repulsion = 17388.036840 eV Total energy + Delta-G solvation = -3056.417138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19228 -38.91348 -35.65756 -33.75057 -33.41682 -32.11373 -30.89510 -29.50824 -27.51463 -26.93378 -25.74095 -23.89172 -21.77867 -21.08134 -20.05442 -19.51389 -17.05471 -16.58602 -16.09354 -15.70299 -15.16680 -14.86801 -14.41898 -14.31703 -14.29564 -13.52310 -13.46116 -13.34816 -13.16844 -12.97061 -12.78608 -12.37969 -12.22065 -12.17501 -11.98986 -11.73511 -11.44519 -11.17854 -11.13506 -10.89565 -10.83914 -10.59769 -9.92354 -9.63715 -9.17367 -9.04151 -8.85303 -8.73789 -8.68584 -8.29596 -5.93904 -3.98274 1.15010 1.17579 3.28751 3.35824 3.39915 3.41384 3.44434 3.68321 4.44085 4.49332 4.55703 4.57661 4.93266 5.06277 5.09949 5.23038 5.30943 5.32225 5.33518 5.36296 5.39707 5.40848 5.56745 5.60516 5.61885 5.75373 5.90449 5.91936 6.03757 6.20634 6.25819 6.27661 6.34825 6.37351 6.43316 6.81851 6.82988 6.92650 7.76450 7.89302 7.92544 8.09830 8.41271 8.81956 9.10286 9.65027 11.17036 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.003140 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.710168 B = 8916.330967 C = 9356.720088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.081 4.081 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.075 4.075 8 C 0.180 3.820 9 H 0.094 0.906 10 C -0.156 4.156 11 N -0.739 5.739 12 C 0.511 3.489 13 O -0.534 6.534 14 C -0.130 4.130 15 C 0.038 3.962 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.120 4.120 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.595 21.695 10.801 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.143 4.143 4 C -0.081 4.081 5 C -0.171 4.171 6 C -0.134 4.134 7 C -0.076 4.076 8 C 0.076 3.924 9 H 0.112 0.888 10 C -0.215 4.215 11 N -0.393 5.393 12 C 0.300 3.700 13 O -0.409 6.409 14 C -0.170 4.170 15 C 0.000 4.000 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.138 4.138 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.547 21.472 10.923 25.562 hybrid contribution -0.901 -0.632 -0.715 1.313 sum -9.448 20.840 10.208 25.055 Atomic orbital electron populations 1.20800 0.91120 1.02754 1.02477 1.19870 0.96030 0.92971 0.99112 1.20881 0.93484 0.97473 1.02460 1.19868 0.93811 0.95191 0.99203 1.20790 0.99909 0.93964 1.02422 1.20882 0.99872 0.91196 1.01456 1.19984 0.93871 0.94630 0.99118 1.19707 0.96738 0.85116 0.90883 0.88841 1.22150 1.02207 1.01911 0.95190 1.46380 1.13035 1.29983 1.49927 1.21564 0.87610 0.80935 0.79908 1.90660 1.15941 1.73112 1.61218 1.21872 1.01268 0.96698 0.97187 1.18888 0.93054 0.91673 0.96366 1.21194 0.95538 1.11489 1.28368 0.92679 1.25024 0.94838 0.97803 0.96721 1.69992 1.06982 1.31869 1.44016 0.86652 0.79227 0.80932 0.81107 1.20261 1.21290 1.20260 1.20805 0.93465 0.97644 1.01901 0.91028 0.91418 0.91643 0.86267 0.91101 0.91633 0.91448 0.85875 0.92488 0.91336 0.91932 0.76965 0.90275 0.90293 0.95836 0.95818 0.92911 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.08 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.15 9.36 -39.59 -0.37 -1.52 16 4 C -0.08 -0.78 5.88 -104.63 -0.62 -1.39 16 5 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 6 C -0.12 -1.25 9.33 -39.59 -0.37 -1.62 16 7 C -0.08 -0.87 4.96 -104.62 -0.52 -1.39 16 8 C 0.18 2.42 2.78 -69.08 -0.19 2.23 16 9 H 0.09 1.42 7.44 -51.93 -0.39 1.04 16 10 C -0.16 -1.94 9.46 37.16 0.35 -1.59 16 11 N -0.74 -10.86 5.03 -54.93 -0.28 -11.14 16 12 C 0.51 10.02 7.79 -10.98 -0.09 9.94 16 13 O -0.53 -12.69 15.64 5.56 0.09 -12.60 16 14 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 15 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 16 C -0.53 -15.14 9.11 -34.44 -0.31 -15.46 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 C -0.12 -1.25 8.72 -39.58 -0.35 -1.60 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.12 1.21 8.04 -52.48 -0.42 0.79 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.40 4.77 6.85 -40.82 -0.28 4.49 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.12 1.12 6.90 -52.48 -0.36 0.76 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -34.05 352.33 -8.78 -42.83 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.89 Total: 0.73 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.73 Total: -15.01 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.46 Total: -38.10 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.05 -8.78 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360168208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.981 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds