Wall clock time and date at job start Mon Mar 30 2020 02:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 120.00453 * 2 1 4 4 C 1.38230 * 120.00086 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00079 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.00201 * 359.97438 * 4 3 2 7 7 C 1.38235 * 119.99987 * 0.02562 * 6 4 3 8 8 C 1.50703 * 120.00193 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.47152 * 339.99970 * 8 7 6 10 10 C 1.53000 * 109.46912 * 100.00198 * 8 7 6 11 11 N 1.46500 * 109.47155 * 219.99968 * 8 7 6 12 12 C 1.34779 * 119.99793 * 154.99862 * 11 8 7 13 13 O 1.21279 * 120.00185 * 0.02562 * 12 11 8 14 14 C 1.50702 * 119.99614 * 179.97438 * 12 11 8 15 15 C 1.53000 * 109.46917 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47208 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00040 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00122 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99744 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47297 * 59.99452 * 20 18 16 22 22 H 1.48499 * 109.47152 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46799 * 299.99707 * 20 18 16 24 24 C 1.38233 * 120.00087 * 0.25640 * 7 6 4 25 25 H 1.09003 * 109.47089 * 90.00304 * 1 2 3 26 26 H 1.08995 * 109.47377 * 210.00495 * 1 2 3 27 27 H 1.08998 * 109.47040 * 330.00858 * 1 2 3 28 28 H 1.08003 * 119.99956 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47462 * 269.98017 * 5 4 3 30 30 H 1.08998 * 109.47268 * 29.97540 * 5 4 3 31 31 H 1.08996 * 109.47383 * 149.97484 * 5 4 3 32 32 H 1.08003 * 120.00511 * 180.02562 * 6 4 3 33 33 H 1.08992 * 109.47399 * 59.99914 * 10 8 7 34 34 H 1.09004 * 109.46724 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47194 * 299.99742 * 10 8 7 36 36 H 0.97004 * 120.00223 * 334.99953 * 11 8 7 37 37 H 1.09002 * 109.47423 * 300.00169 * 14 12 11 38 38 H 1.09002 * 109.46795 * 60.00420 * 14 12 11 39 39 H 1.09002 * 109.47125 * 300.00244 * 15 14 12 40 40 H 1.09002 * 109.47464 * 60.00088 * 15 14 12 41 41 H 0.97004 * 119.99561 * 180.02562 * 19 18 16 42 42 H 1.08003 * 120.00479 * 179.72732 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.3342 2.5020 0.0000 6 6 4.2717 -0.0002 0.0016 7 6 3.5805 -1.1973 0.0016 8 6 4.3339 -2.5025 0.0022 9 1 5.3521 -2.3344 -0.3489 10 6 4.3713 -3.0691 1.4229 11 7 3.6620 -3.4546 -0.8857 12 6 4.3603 -4.4628 -1.4448 13 8 5.5446 -4.5820 -1.2125 14 6 3.6690 -5.4425 -2.3577 15 6 4.6798 -6.4789 -2.8526 16 6 3.9887 -7.4583 -3.7660 17 1 2.9341 -7.3519 -3.9731 18 6 4.7027 -8.4902 -4.3372 19 7 5.9870 -8.6195 -4.0854 20 14 3.8462 -9.7038 -5.4699 21 1 3.2738 -8.9774 -6.6317 22 1 4.8273 -10.7098 -5.9502 23 1 2.7568 -10.3887 -4.7287 24 6 2.1982 -1.1973 -0.0048 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1324 -0.0004 29 1 4.5166 2.8158 -1.0278 30 1 3.7448 3.2621 0.5126 31 1 5.2862 2.3721 0.5146 32 1 5.3517 -0.0003 0.0024 33 1 3.3533 -3.2371 1.7740 34 1 4.9167 -4.0129 1.4234 35 1 4.8712 -2.3607 2.0836 36 1 2.7147 -3.3594 -1.0712 37 1 2.8704 -5.9458 -1.8126 38 1 3.2474 -4.9096 -3.2100 39 1 5.4787 -5.9760 -3.3975 40 1 5.1010 -7.0117 -2.0001 41 1 6.4894 -9.3453 -4.4876 42 1 1.6581 -2.1326 -0.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360168208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:55 Heat of formation + Delta-G solvation = -65.181319 kcal Electronic energy + Delta-G solvation = -20445.337083 eV Core-core repulsion = 17388.036840 eV Total energy + Delta-G solvation = -3057.300243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24210 -40.19361 -36.88341 -35.54342 -34.40227 -33.49140 -32.60357 -30.61525 -28.12415 -27.78566 -27.54394 -25.09509 -23.51681 -21.94249 -21.17532 -20.89112 -18.85372 -17.75788 -17.45590 -16.89726 -16.52359 -16.43716 -16.11164 -15.29995 -15.06778 -14.80761 -14.55549 -14.26959 -14.19117 -13.98365 -13.84735 -13.71111 -13.32867 -13.23683 -13.19643 -12.81674 -12.77502 -12.58094 -12.49776 -12.26568 -11.91597 -11.91294 -11.74264 -11.62786 -11.32258 -10.75089 -10.56184 -10.16079 -9.56515 -9.46708 -8.17719 -6.32024 0.36042 0.42979 1.41978 1.46743 1.54457 1.70894 2.22202 2.44763 2.78368 3.15040 3.52279 3.84701 3.92836 4.02670 4.20555 4.24675 4.28586 4.48201 4.48835 4.50147 4.55320 4.57578 4.69141 4.75233 4.82388 4.84896 4.88701 4.98550 5.08045 5.09093 5.15981 5.24931 5.35303 5.41736 5.49860 5.62989 5.63284 5.64300 5.72016 5.85532 6.10082 6.17761 6.58262 6.86204 7.32987 7.38304 8.94818 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.003140 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.710168 B = 8916.330967 C = 9356.720088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.128 4.128 4 C -0.086 4.086 5 C -0.114 4.114 6 C -0.133 4.133 7 C -0.087 4.087 8 C 0.182 3.818 9 H 0.069 0.931 10 C -0.150 4.150 11 N -0.714 5.714 12 C 0.513 3.487 13 O -0.586 6.586 14 C -0.120 4.120 15 C 0.043 3.957 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.262 1.262 24 C -0.129 4.129 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.412 0.588 37 H 0.105 0.895 38 H 0.102 0.898 39 H -0.019 1.019 40 H -0.017 1.017 41 H 0.263 0.737 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.838 23.025 10.644 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.146 4.146 4 C -0.086 4.086 5 C -0.170 4.170 6 C -0.151 4.151 7 C -0.087 4.087 8 C 0.077 3.923 9 H 0.087 0.913 10 C -0.208 4.208 11 N -0.368 5.368 12 C 0.302 3.698 13 O -0.465 6.465 14 C -0.159 4.159 15 C 0.006 3.994 16 C -0.583 4.583 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.213 1.213 23 H -0.186 1.186 24 C -0.148 4.148 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.159 0.841 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.250 0.750 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.000 1.000 40 H 0.001 0.999 41 H 0.072 0.928 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.854 22.849 10.783 27.908 hybrid contribution 0.111 -0.937 -0.617 1.127 sum -11.744 21.912 10.166 26.859 Atomic orbital electron populations 1.20848 0.89253 1.03776 1.03147 1.20196 0.97450 0.92606 0.98078 1.21229 0.93452 0.98460 1.01460 1.20169 0.94393 0.95622 0.98397 1.20837 1.00075 0.93108 1.02987 1.21021 1.00149 0.91689 1.02257 1.19793 0.94396 0.93492 1.01065 1.19721 0.95812 0.85964 0.90796 0.91285 1.22084 1.02935 1.00861 0.94928 1.46100 1.13600 1.28454 1.48668 1.21341 0.86897 0.81699 0.79891 1.90648 1.18135 1.74607 1.63159 1.21649 0.99900 0.95786 0.98597 1.18674 0.93535 0.92790 0.94439 1.21693 0.96580 1.11693 1.28290 0.90592 1.26152 0.95488 1.00238 0.98601 1.70178 1.09132 1.32902 1.45573 0.85364 0.78065 0.77896 0.78862 1.18695 1.21319 1.18622 1.20960 0.92913 0.98744 1.02134 0.90409 0.90825 0.90293 0.84055 0.90640 0.90042 0.91160 0.85945 0.90894 0.94071 0.90285 0.74975 0.87645 0.87933 1.00030 0.99881 0.92848 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.08 -1.36 5.88 -19.86 -0.12 -1.48 16 3 C -0.13 -2.03 9.36 22.27 0.21 -1.82 16 4 C -0.09 -1.50 5.88 -19.87 -0.12 -1.62 16 5 C -0.11 -1.39 10.01 71.24 0.71 -0.67 16 6 C -0.13 -2.79 9.33 22.27 0.21 -2.58 16 7 C -0.09 -1.94 4.96 -19.87 -0.10 -2.03 16 8 C 0.18 4.91 2.78 44.25 0.12 5.03 16 9 H 0.07 2.22 7.44 -2.39 -0.02 2.20 16 10 C -0.15 -3.72 9.46 71.98 0.68 -3.04 16 11 N -0.71 -20.69 5.03 -446.09 -2.24 -22.93 16 12 C 0.51 20.55 7.79 87.66 0.68 21.23 16 13 O -0.59 -29.46 15.64 -3.03 -0.05 -29.51 16 14 C -0.12 -4.92 5.64 29.85 0.17 -4.76 16 15 C 0.04 2.46 4.26 29.85 0.13 2.58 16 16 C -0.54 -31.43 9.11 25.60 0.23 -31.20 16 17 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 18 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 19 N -0.94 -60.25 13.29 21.45 0.28 -59.97 16 20 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 C -0.13 -2.44 8.72 22.27 0.19 -2.25 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 27 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 28 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 31 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 32 H 0.12 2.47 8.04 -2.91 -0.02 2.44 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.41 9.19 6.85 -92.71 -0.64 8.55 16 37 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 38 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 39 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 40 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 41 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.13 2.11 6.90 -2.91 -0.02 2.09 16 Total: -1.00 -77.13 352.33 4.56 -72.57 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.36 Total: 16.23 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.18 Total: -23.10 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -1.96 Total: -82.90 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.05 Total: -29.51 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -77.13 4.56 -72.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360168208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.393 kcal (2) G-P(sol) polarization free energy of solvation -77.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds