Wall clock time and date at job start Mon Mar 30 2020 02:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99811 * 2 1 4 4 C 1.38235 * 119.99701 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99908 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00393 * 359.97230 * 4 3 2 7 7 C 1.38237 * 119.99630 * 0.02562 * 6 4 3 8 8 C 1.50707 * 120.00013 * 179.97438 * 7 6 4 9 9 H 1.08997 * 109.46681 * 20.00224 * 8 7 6 10 10 C 1.52995 * 109.47004 * 260.00464 * 8 7 6 11 11 N 1.46496 * 109.46851 * 140.00279 * 8 7 6 12 12 C 1.34774 * 119.99544 * 205.00060 * 11 8 7 13 13 O 1.21279 * 120.00472 * 0.02562 * 12 11 8 14 14 C 1.50706 * 120.00020 * 180.02562 * 12 11 8 15 15 C 1.52997 * 109.47238 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99493 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99862 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47053 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46689 * 120.00372 * 20 18 16 23 23 H 1.48497 * 109.46761 * 240.00181 * 20 18 16 24 24 C 1.38236 * 120.00248 * 0.25565 * 7 6 4 25 25 H 1.08998 * 109.47283 * 90.00470 * 1 2 3 26 26 H 1.08997 * 109.47192 * 210.00201 * 1 2 3 27 27 H 1.09002 * 109.47220 * 330.00279 * 1 2 3 28 28 H 1.07998 * 119.99981 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47230 * 269.97204 * 5 4 3 30 30 H 1.08998 * 109.46923 * 29.97785 * 5 4 3 31 31 H 1.09003 * 109.47205 * 149.97781 * 5 4 3 32 32 H 1.07994 * 120.00450 * 180.02562 * 6 4 3 33 33 H 1.09007 * 109.47250 * 299.99628 * 10 8 7 34 34 H 1.09002 * 109.47248 * 59.99795 * 10 8 7 35 35 H 1.08997 * 109.47151 * 180.02562 * 10 8 7 36 36 H 0.96994 * 120.00700 * 25.00179 * 11 8 7 37 37 H 1.09001 * 109.46953 * 299.99667 * 14 12 11 38 38 H 1.09000 * 109.47318 * 59.99264 * 14 12 11 39 39 H 1.09001 * 109.46832 * 299.99686 * 15 14 12 40 40 H 1.09004 * 109.47261 * 59.99705 * 15 14 12 41 41 H 0.96999 * 119.99718 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.00251 * 179.72103 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0017 8 6 4.3341 -2.5023 0.0023 9 1 5.3518 -2.3340 0.3542 10 6 4.3727 -3.0695 -1.4181 11 7 3.6615 -3.4540 0.8901 12 6 4.3593 -4.4618 1.4502 13 8 5.5440 -4.5807 1.2197 14 6 3.6673 -5.4412 2.3630 15 6 4.6781 -6.4766 2.8603 16 6 3.9863 -7.4556 3.7735 17 1 2.9312 -7.3501 3.9785 18 6 4.7001 -8.4866 4.3467 19 7 5.9848 -8.6153 4.0967 20 14 3.8424 -9.7005 5.4782 21 1 2.4072 -9.3382 5.5961 22 1 3.9634 -11.0702 4.9175 23 1 4.4751 -9.6576 6.8209 24 6 2.1982 -1.1972 -0.0047 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6581 2.1324 -0.0004 29 1 4.5165 2.8160 -1.0279 30 1 3.7445 3.2623 0.5127 31 1 5.2861 2.3724 0.5146 32 1 5.3517 0.0000 0.0025 33 1 3.3549 -3.2378 -1.7700 34 1 4.8731 -2.3614 -2.0786 35 1 4.9173 -4.0137 -1.4176 36 1 2.7140 -3.3588 1.0748 37 1 3.2451 -4.9080 3.2148 38 1 2.8691 -5.9447 1.8177 39 1 5.1007 -7.0098 2.0087 40 1 5.4759 -5.9727 3.4058 41 1 6.4871 -9.3404 4.5002 42 1 1.6582 -2.1324 -0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360168211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:59 Heat of formation + Delta-G solvation = -44.961856 kcal Electronic energy + Delta-G solvation = -20444.435044 eV Core-core repulsion = 17388.011583 eV Total energy + Delta-G solvation = -3056.423461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19169 -38.91398 -35.65775 -33.75031 -33.41823 -32.11613 -30.89594 -29.50617 -27.51412 -26.93418 -25.74335 -23.89301 -21.77955 -21.08141 -20.05574 -19.51464 -17.05339 -16.58600 -16.09649 -15.71002 -15.17190 -14.86797 -14.41732 -14.31750 -14.27703 -13.51881 -13.46751 -13.35500 -13.16491 -12.97855 -12.78266 -12.39665 -12.22014 -12.18103 -11.99001 -11.71028 -11.45739 -11.18112 -11.12656 -10.93113 -10.83965 -10.55972 -9.93305 -9.63888 -9.16530 -9.02779 -8.85149 -8.73861 -8.68706 -8.30324 -5.94338 -3.98452 1.14957 1.17511 3.28731 3.33789 3.40200 3.42781 3.45146 3.68362 4.44143 4.49230 4.55742 4.57748 4.93424 5.06628 5.10435 5.22756 5.30275 5.31930 5.33502 5.36988 5.38460 5.40674 5.56807 5.60636 5.62047 5.75251 5.90389 5.91981 6.03683 6.20507 6.25850 6.27702 6.34857 6.37347 6.43365 6.81805 6.82999 6.92677 7.76977 7.89164 7.92603 8.09568 8.41179 8.82008 9.10500 9.64943 11.16686 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.003139 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.736101 B = 8917.484481 C = 9357.542855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.081 4.081 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.076 4.076 8 C 0.180 3.820 9 H 0.094 0.906 10 C -0.156 4.156 11 N -0.738 5.738 12 C 0.511 3.489 13 O -0.534 6.534 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.120 4.120 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.396 0.604 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 21.703 -10.926 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.143 4.143 4 C -0.081 4.081 5 C -0.171 4.171 6 C -0.134 4.134 7 C -0.076 4.076 8 C 0.076 3.924 9 H 0.112 0.888 10 C -0.215 4.215 11 N -0.393 5.393 12 C 0.300 3.700 13 O -0.409 6.409 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.138 4.138 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.575 21.484 -11.042 25.633 hybrid contribution -0.876 -0.641 0.691 1.286 sum -9.451 20.844 -10.351 25.118 Atomic orbital electron populations 1.20799 0.91120 1.02913 1.02317 1.19869 0.96031 0.92970 0.99120 1.20885 0.93485 0.97474 1.02443 1.19871 0.93809 0.95192 0.99210 1.20792 1.00015 0.93988 1.02295 1.20885 0.99873 0.91196 1.01443 1.19987 0.93872 0.94628 0.99122 1.19705 0.96735 0.85120 0.90883 0.88841 1.22152 1.02211 1.01904 0.95196 1.46372 1.13014 1.30005 1.49915 1.21564 0.87623 0.80936 0.79900 1.90660 1.15916 1.73105 1.61256 1.21871 1.01253 0.96710 0.97184 1.18898 0.93069 0.91714 0.96373 1.21268 0.95543 1.11438 1.28174 0.92577 1.25032 0.94839 0.97824 0.96749 1.70009 1.06979 1.31832 1.44014 0.86538 0.79682 0.81144 0.80614 1.19755 1.21028 1.21033 1.20805 0.93464 0.97649 1.01888 0.91187 0.91320 0.91590 0.86266 0.91181 0.91598 0.91400 0.85876 0.92493 0.91930 0.91334 0.76969 0.90292 0.90277 0.95815 0.95823 0.93029 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.08 -0.76 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.15 9.36 -39.58 -0.37 -1.52 16 4 C -0.08 -0.78 5.88 -104.62 -0.62 -1.39 16 5 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 6 C -0.12 -1.25 9.33 -39.58 -0.37 -1.62 16 7 C -0.08 -0.87 4.95 -104.62 -0.52 -1.39 16 8 C 0.18 2.42 2.77 -69.08 -0.19 2.23 16 9 H 0.09 1.42 7.44 -51.93 -0.39 1.03 16 10 C -0.16 -1.94 9.46 37.15 0.35 -1.59 16 11 N -0.74 -10.85 5.03 -54.93 -0.28 -11.13 16 12 C 0.51 10.02 7.79 -10.98 -0.09 9.93 16 13 O -0.53 -12.68 15.64 5.56 0.09 -12.60 16 14 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 15 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 16 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.66 13.29 55.43 0.74 -26.93 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.12 -1.25 8.71 -39.58 -0.34 -1.59 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 4.77 6.89 -40.82 -0.28 4.49 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.12 1.12 6.93 -52.49 -0.36 0.76 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -34.09 352.38 -8.79 -42.87 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.90 Total: 0.64 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -2.72 Total: -14.99 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.46 Total: -38.06 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.09 -8.79 -42.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360168211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.090 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds