Wall clock time and date at job start Mon Mar 30 2020 02:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 119.99811 * 2 1 4 4 C 1.38235 * 119.99701 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99908 * 179.97438 * 4 3 2 6 6 C 1.38236 * 120.00393 * 359.97230 * 4 3 2 7 7 C 1.38237 * 119.99630 * 0.02562 * 6 4 3 8 8 C 1.50707 * 120.00013 * 179.97438 * 7 6 4 9 9 H 1.08997 * 109.46681 * 20.00224 * 8 7 6 10 10 C 1.52995 * 109.47004 * 260.00464 * 8 7 6 11 11 N 1.46496 * 109.46851 * 140.00279 * 8 7 6 12 12 C 1.34774 * 119.99544 * 205.00060 * 11 8 7 13 13 O 1.21279 * 120.00472 * 0.02562 * 12 11 8 14 14 C 1.50706 * 120.00020 * 180.02562 * 12 11 8 15 15 C 1.52997 * 109.47238 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37887 * 120.00079 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99493 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99862 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47053 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46689 * 120.00372 * 20 18 16 23 23 H 1.48497 * 109.46761 * 240.00181 * 20 18 16 24 24 C 1.38236 * 120.00248 * 0.25565 * 7 6 4 25 25 H 1.08998 * 109.47283 * 90.00470 * 1 2 3 26 26 H 1.08997 * 109.47192 * 210.00201 * 1 2 3 27 27 H 1.09002 * 109.47220 * 330.00279 * 1 2 3 28 28 H 1.07998 * 119.99981 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47230 * 269.97204 * 5 4 3 30 30 H 1.08998 * 109.46923 * 29.97785 * 5 4 3 31 31 H 1.09003 * 109.47205 * 149.97781 * 5 4 3 32 32 H 1.07994 * 120.00450 * 180.02562 * 6 4 3 33 33 H 1.09007 * 109.47250 * 299.99628 * 10 8 7 34 34 H 1.09002 * 109.47248 * 59.99795 * 10 8 7 35 35 H 1.08997 * 109.47151 * 180.02562 * 10 8 7 36 36 H 0.96994 * 120.00700 * 25.00179 * 11 8 7 37 37 H 1.09001 * 109.46953 * 299.99667 * 14 12 11 38 38 H 1.09000 * 109.47318 * 59.99264 * 14 12 11 39 39 H 1.09001 * 109.46832 * 299.99686 * 15 14 12 40 40 H 1.09004 * 109.47261 * 59.99705 * 15 14 12 41 41 H 0.96999 * 119.99718 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.00251 * 179.72103 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0017 8 6 4.3341 -2.5023 0.0023 9 1 5.3518 -2.3340 0.3542 10 6 4.3727 -3.0695 -1.4181 11 7 3.6615 -3.4540 0.8901 12 6 4.3593 -4.4618 1.4502 13 8 5.5440 -4.5807 1.2197 14 6 3.6673 -5.4412 2.3630 15 6 4.6781 -6.4766 2.8603 16 6 3.9863 -7.4556 3.7735 17 1 2.9312 -7.3501 3.9785 18 6 4.7001 -8.4866 4.3467 19 7 5.9848 -8.6153 4.0967 20 14 3.8424 -9.7005 5.4782 21 1 2.4072 -9.3382 5.5961 22 1 3.9634 -11.0702 4.9175 23 1 4.4751 -9.6576 6.8209 24 6 2.1982 -1.1972 -0.0047 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6581 2.1324 -0.0004 29 1 4.5165 2.8160 -1.0279 30 1 3.7445 3.2623 0.5127 31 1 5.2861 2.3724 0.5146 32 1 5.3517 0.0000 0.0025 33 1 3.3549 -3.2378 -1.7700 34 1 4.8731 -2.3614 -2.0786 35 1 4.9173 -4.0137 -1.4176 36 1 2.7140 -3.3588 1.0748 37 1 3.2451 -4.9080 3.2148 38 1 2.8691 -5.9447 1.8177 39 1 5.1007 -7.0098 2.0087 40 1 5.4759 -5.9727 3.4058 41 1 6.4871 -9.3404 4.5002 42 1 1.6582 -2.1324 -0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360168211.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:58 Heat of formation + Delta-G solvation = -65.351833 kcal Electronic energy + Delta-G solvation = -20445.319220 eV Core-core repulsion = 17388.011583 eV Total energy + Delta-G solvation = -3057.307637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24084 -40.19322 -36.88285 -35.54408 -34.40160 -33.49224 -32.60475 -30.61179 -28.12323 -27.78496 -27.54609 -25.09603 -23.51735 -21.94059 -21.17580 -20.89192 -18.85631 -17.75768 -17.45643 -16.90113 -16.51931 -16.43461 -16.11398 -15.30787 -15.04468 -14.80965 -14.55731 -14.26946 -14.19838 -13.97735 -13.84887 -13.72337 -13.33259 -13.23562 -13.19533 -12.85108 -12.81169 -12.56105 -12.43968 -12.26590 -11.93084 -11.91586 -11.74247 -11.62711 -11.28347 -10.74928 -10.58051 -10.15962 -9.56453 -9.46615 -8.18050 -6.32035 0.36074 0.43046 1.42155 1.43732 1.57066 1.71005 2.22316 2.44576 2.78411 3.14978 3.52306 3.84792 3.92862 4.02762 4.20710 4.24557 4.28816 4.48262 4.48608 4.50151 4.55388 4.57580 4.69104 4.75179 4.82722 4.84969 4.88566 4.98666 5.08088 5.09226 5.16037 5.24965 5.35393 5.41877 5.50332 5.63017 5.63293 5.64387 5.72040 5.85659 6.10132 6.17824 6.58415 6.86570 7.33097 7.38288 8.94904 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.003139 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.736101 B = 8917.484481 C = 9357.542855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.128 4.128 4 C -0.086 4.086 5 C -0.113 4.113 6 C -0.133 4.133 7 C -0.087 4.087 8 C 0.182 3.818 9 H 0.069 0.931 10 C -0.150 4.150 11 N -0.714 5.714 12 C 0.513 3.487 13 O -0.586 6.586 14 C -0.120 4.120 15 C 0.043 3.957 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.252 1.252 22 H -0.280 1.280 23 H -0.281 1.281 24 C -0.129 4.129 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.412 0.588 37 H 0.102 0.898 38 H 0.105 0.895 39 H -0.017 1.017 40 H -0.019 1.019 41 H 0.263 0.737 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 23.038 -10.771 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.146 4.146 4 C -0.086 4.086 5 C -0.170 4.170 6 C -0.151 4.151 7 C -0.087 4.087 8 C 0.077 3.923 9 H 0.087 0.913 10 C -0.208 4.208 11 N -0.368 5.368 12 C 0.302 3.698 13 O -0.466 6.466 14 C -0.159 4.159 15 C 0.005 3.995 16 C -0.580 4.580 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.176 1.176 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.147 4.147 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.159 0.841 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.250 0.750 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.001 0.999 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.880 22.866 -10.905 27.980 hybrid contribution 0.137 -0.948 0.592 1.126 sum -11.743 21.918 -10.313 26.919 Atomic orbital electron populations 1.20849 0.89254 1.03740 1.03192 1.20196 0.97451 0.92607 0.98075 1.21229 0.93448 0.98459 1.01468 1.20172 0.94392 0.95622 0.98396 1.20838 0.99928 0.93071 1.03163 1.21021 1.00143 0.91692 1.02266 1.19794 0.94399 0.93487 1.01061 1.19719 0.95806 0.85970 0.90800 0.91291 1.22085 1.02944 1.00852 0.94928 1.46092 1.13583 1.28475 1.48655 1.21341 0.86908 0.81697 0.79884 1.90648 1.18109 1.74601 1.63198 1.21648 0.99890 0.95802 0.98587 1.18684 0.93549 0.92818 0.94454 1.21746 0.96515 1.11638 1.28095 0.90598 1.26155 0.95502 1.00256 0.98631 1.70186 1.09123 1.32912 1.45565 0.85259 0.79233 0.77901 0.77764 1.17567 1.20586 1.20649 1.20958 0.92907 0.98745 1.02130 0.90190 0.90893 0.90431 0.84063 0.90132 0.90250 0.91462 0.85958 0.90893 0.90284 0.94069 0.74978 0.87940 0.87642 0.99870 1.00009 0.92863 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.08 -1.36 5.88 -19.86 -0.12 -1.48 16 3 C -0.13 -2.03 9.36 22.27 0.21 -1.82 16 4 C -0.09 -1.50 5.88 -19.87 -0.12 -1.62 16 5 C -0.11 -1.39 10.01 71.24 0.71 -0.67 16 6 C -0.13 -2.79 9.33 22.27 0.21 -2.58 16 7 C -0.09 -1.93 4.95 -19.86 -0.10 -2.03 16 8 C 0.18 4.90 2.77 44.25 0.12 5.03 16 9 H 0.07 2.22 7.44 -2.39 -0.02 2.20 16 10 C -0.15 -3.72 9.46 71.98 0.68 -3.04 16 11 N -0.71 -20.67 5.03 -446.10 -2.24 -22.92 16 12 C 0.51 20.53 7.79 87.66 0.68 21.21 16 13 O -0.59 -29.45 15.64 -3.02 -0.05 -29.50 16 14 C -0.12 -4.92 5.64 29.85 0.17 -4.75 16 15 C 0.04 2.42 4.26 29.85 0.13 2.54 16 16 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 17 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 18 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 19 N -0.94 -60.17 13.29 21.45 0.28 -59.89 16 20 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 21 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 C -0.13 -2.44 8.71 22.27 0.19 -2.24 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 27 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 28 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 31 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 32 H 0.12 2.47 8.04 -2.91 -0.02 2.44 16 33 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.41 9.18 6.89 -92.71 -0.64 8.54 16 37 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 39 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 40 H -0.02 -1.19 8.10 -2.38 -0.02 -1.21 16 41 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.13 2.10 6.93 -2.91 -0.02 2.08 16 Total: -1.00 -77.15 352.38 4.56 -72.60 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.35 Total: 15.97 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.18 Total: -23.00 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.96 Total: -82.80 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.05 Total: -29.50 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.15 4.56 -72.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360168211.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.245 kcal (2) G-P(sol) polarization free energy of solvation -77.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds