Wall clock time and date at job start Mon Mar 30 2020 02:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00034 * 2 1 4 4 C 1.38211 * 120.00175 * 180.23734 * 3 2 1 5 5 C 1.38260 * 120.00008 * 359.79887 * 4 3 2 6 6 C 1.38215 * 119.99680 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99534 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46948 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46882 * 299.96876 * 7 6 5 10 10 C 1.52992 * 109.47407 * 59.97739 * 7 6 5 11 11 N 1.46498 * 109.47032 * 175.00231 * 10 7 6 12 12 C 1.34783 * 119.99877 * 180.02562 * 11 10 7 13 13 O 1.21277 * 120.00170 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99681 * 179.97438 * 12 11 10 15 15 C 1.53008 * 109.46754 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47077 * 179.97438 * 15 14 12 17 17 H 1.08011 * 119.99701 * 359.97438 * 16 15 14 18 18 C 1.37868 * 119.99955 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99806 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00356 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46988 * 89.99760 * 20 18 16 22 22 H 1.48500 * 109.47136 * 210.00106 * 20 18 16 23 23 H 1.48503 * 109.46833 * 329.99874 * 20 18 16 24 24 C 1.38211 * 120.00162 * 179.80188 * 2 1 3 25 25 H 1.09001 * 109.47236 * 270.19071 * 1 2 3 26 26 H 1.09000 * 109.47285 * 30.19264 * 1 2 3 27 27 H 1.08993 * 109.47149 * 150.19759 * 1 2 3 28 28 H 1.08003 * 120.00342 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00392 * 179.78930 * 4 3 2 30 30 H 1.07996 * 119.99860 * 179.97438 * 5 4 3 31 31 H 1.08991 * 109.47468 * 300.00189 * 9 7 6 32 32 H 1.09005 * 109.46462 * 60.00764 * 9 7 6 33 33 H 1.09006 * 109.46931 * 180.02562 * 9 7 6 34 34 H 1.09002 * 109.47153 * 294.99640 * 10 7 6 35 35 H 1.09001 * 109.47561 * 54.99336 * 10 7 6 36 36 H 0.96996 * 120.00603 * 359.97438 * 11 10 7 37 37 H 1.09002 * 109.46908 * 299.99074 * 14 12 11 38 38 H 1.08995 * 109.47476 * 59.99901 * 14 12 11 39 39 H 1.08990 * 109.46742 * 299.99751 * 15 14 12 40 40 H 1.08995 * 109.46918 * 59.99917 * 15 14 12 41 41 H 0.96999 * 119.99652 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.00200 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0050 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0020 7 6 4.3342 -2.5020 -0.0035 8 1 3.6258 -3.3305 0.0004 9 6 5.2087 -2.5845 -1.2562 10 6 5.2187 -2.5816 1.2423 11 7 5.8595 -3.8976 1.3030 12 6 6.6891 -4.1968 2.3222 13 8 6.9055 -3.3765 3.1888 14 6 7.3478 -5.5508 2.3848 15 6 8.2325 -5.6303 3.6307 16 6 8.8908 -6.9845 3.6937 17 1 8.6971 -7.7155 2.9225 18 6 9.7393 -7.2906 4.7364 19 7 10.3141 -8.4723 4.7911 20 14 10.0725 -6.0272 6.0713 21 1 9.0773 -6.1853 7.1620 22 1 11.4394 -6.2303 6.6150 23 1 9.9658 -4.6614 5.4979 24 6 2.1980 -1.1969 0.0041 25 1 -0.3634 0.0034 1.0277 26 1 -0.3634 0.8882 -0.5168 27 1 -0.3633 -0.8917 -0.5107 28 1 1.6583 2.1327 0.0004 29 1 4.1204 2.1327 -0.0084 30 1 5.3516 0.0001 -0.0100 31 1 4.5785 -2.5279 -2.1437 32 1 5.9170 -1.7560 -1.2599 33 1 5.7534 -3.5287 -1.2575 34 1 5.9839 -1.8068 1.1947 35 1 4.6070 -2.4338 2.1324 36 1 5.6862 -4.5539 0.6101 37 1 6.5823 -6.3254 2.4324 38 1 7.9597 -5.6987 1.4951 39 1 8.9978 -4.8558 3.5828 40 1 7.6209 -5.4822 4.5206 41 1 10.9108 -8.6877 5.5248 42 1 1.6581 -2.1323 0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360264233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:58 Heat of formation + Delta-G solvation = -64.414417 kcal Electronic energy + Delta-G solvation = -20154.349683 eV Core-core repulsion = 17097.082696 eV Total energy + Delta-G solvation = -3057.266987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97989 -40.31012 -37.31750 -35.53605 -34.47723 -33.32159 -33.00520 -30.63727 -28.64320 -27.70152 -26.87123 -24.11823 -23.00995 -22.86056 -21.33587 -20.40667 -19.18567 -17.74800 -17.43025 -17.03035 -16.71796 -16.29224 -16.16991 -15.68195 -15.25623 -14.94075 -14.71220 -14.50369 -14.37474 -14.27601 -13.92331 -13.72568 -13.39888 -13.16479 -13.01546 -12.89356 -12.77982 -12.29407 -12.16254 -12.07431 -11.96544 -11.77394 -11.70576 -11.63834 -11.39614 -10.78287 -10.78034 -10.07668 -9.70272 -9.47808 -8.31478 -6.34125 0.42353 0.49030 1.33002 1.34885 1.50181 1.69834 2.26063 2.35029 2.84042 3.04203 3.69934 3.72343 3.98970 4.05030 4.08230 4.13009 4.27396 4.35289 4.41439 4.50280 4.52819 4.59206 4.66275 4.74556 4.83513 4.84470 4.95609 4.98612 5.03733 5.10687 5.19416 5.28755 5.33416 5.34441 5.45324 5.49037 5.59623 5.61657 5.69304 5.72513 6.13745 6.23786 6.60075 6.72336 7.31212 7.32442 8.84128 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035542 B = 0.002792 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.603827 B =10025.647496 C =10232.348581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.124 4.124 5 C -0.133 4.133 6 C -0.080 4.080 7 C -0.051 4.051 8 H 0.099 0.901 9 C -0.143 4.143 10 C 0.130 3.870 11 N -0.716 5.716 12 C 0.513 3.487 13 O -0.589 6.589 14 C -0.116 4.116 15 C 0.004 3.996 16 C -0.528 4.528 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.938 3.062 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.126 4.126 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.417 0.583 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.009 0.991 40 H 0.007 0.993 41 H 0.267 0.733 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.342 18.496 -15.623 31.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.081 4.081 7 C -0.069 4.069 8 H 0.118 0.882 9 C -0.200 4.200 10 C 0.007 3.993 11 N -0.370 5.370 12 C 0.301 3.699 13 O -0.469 6.469 14 C -0.156 4.156 15 C -0.034 4.034 16 C -0.566 4.566 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.584 5.584 20 Si 0.762 3.238 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.144 4.144 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.254 0.746 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.083 18.977 -14.928 31.405 hybrid contribution 0.549 -0.034 0.618 0.828 sum -19.534 18.943 -14.309 30.743 Atomic orbital electron populations 1.20829 0.89624 1.03652 1.02887 1.20246 0.97387 0.93040 0.98930 1.21326 0.94354 0.98363 1.01092 1.21390 0.94809 0.98439 0.99573 1.21181 1.00270 0.92508 1.01182 1.19767 0.93876 0.94432 1.00020 1.20285 0.96759 0.95707 0.94188 0.88229 1.21870 0.99334 1.02656 0.96182 1.21340 0.95423 0.84582 0.97985 1.45898 1.46998 1.17232 1.26855 1.21231 0.78230 0.89794 0.80622 1.90640 1.63708 1.51946 1.40632 1.21501 1.00039 0.92925 1.01141 1.19227 0.94820 0.94922 0.94426 1.21437 1.26493 0.99333 1.09332 0.93007 1.25801 0.95398 0.96963 1.00310 1.70024 1.32108 1.22659 1.33594 0.85836 0.77805 0.80395 0.79714 1.19404 1.20313 1.18691 1.21183 0.93325 0.98556 1.01330 0.90776 0.90543 0.90778 0.84511 0.84681 0.86041 0.91253 0.92703 0.91254 0.92609 0.93246 0.74587 0.87804 0.87774 0.97273 0.97439 0.92384 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 71.23 0.71 -0.44 16 2 C -0.10 -1.47 5.88 -19.87 -0.12 -1.59 16 3 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 4 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 5 C -0.13 -2.44 8.76 22.27 0.20 -2.25 16 6 C -0.08 -1.42 4.78 -19.86 -0.09 -1.52 16 7 C -0.05 -0.82 2.60 -11.54 -0.03 -0.85 16 8 H 0.10 1.33 7.88 -2.38 -0.02 1.31 16 9 C -0.14 -2.00 8.88 71.98 0.64 -1.36 16 10 C 0.13 3.02 4.80 86.38 0.41 3.44 16 11 N -0.72 -17.73 5.28 -463.07 -2.45 -20.18 16 12 C 0.51 18.32 7.83 87.66 0.69 19.00 16 13 O -0.59 -26.64 15.98 -3.02 -0.05 -26.69 16 14 C -0.12 -4.38 5.64 29.85 0.17 -4.21 16 15 C 0.00 0.20 3.33 29.85 0.10 0.30 16 16 C -0.53 -30.62 9.66 25.60 0.25 -30.38 16 17 H 0.05 3.14 7.99 -2.90 -0.02 3.12 16 18 C 0.01 0.77 5.47 84.65 0.46 1.24 16 19 N -0.94 -59.33 13.96 21.44 0.30 -59.03 16 20 Si 0.94 47.27 27.47 68.60 1.88 49.15 16 21 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.26 -13.21 6.54 99.48 0.65 -12.56 16 24 C -0.13 -2.06 9.33 22.27 0.21 -1.85 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.60 8.09 -2.39 -0.02 0.59 16 27 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 28 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 29 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.12 2.14 7.16 -2.91 -0.02 2.12 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.84 7.39 -2.38 -0.02 0.82 16 33 H 0.07 0.88 7.18 -2.38 -0.02 0.86 16 34 H 0.06 1.43 7.57 -2.39 -0.02 1.42 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.42 7.35 7.66 -92.71 -0.71 6.64 16 37 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 39 H 0.01 0.47 7.16 -2.39 -0.02 0.45 16 40 H 0.01 0.38 7.52 -2.39 -0.02 0.36 16 41 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 42 H 0.13 1.75 7.95 -2.91 -0.02 1.72 16 Total: -1.00 -74.50 346.93 3.95 -70.55 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.23 Total: 10.30 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 4.03 Total: -24.11 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -2.15 Total: -79.21 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.88 Total: 49.15 kcal Total: -74.50 3.95 -70.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360264233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.140 kcal (2) G-P(sol) polarization free energy of solvation -74.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds