Wall clock time and date at job start Mon Mar 30 2020 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 120.00430 * 2 1 4 4 C 1.38236 * 120.00294 * 180.27215 * 3 2 1 5 5 C 1.38227 * 119.99925 * 359.74919 * 4 3 2 6 6 C 1.38239 * 120.00360 * 359.97438 * 5 4 3 7 7 C 1.50691 * 120.00458 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99414 * 0.02562 * 6 5 4 9 9 C 1.50702 * 120.00074 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47631 * 173.18353 * 9 8 6 11 11 C 1.53001 * 109.46747 * 293.18788 * 9 8 6 12 12 N 1.46499 * 109.47097 * 53.17784 * 9 8 6 13 13 C 1.34777 * 120.00056 * 169.83589 * 12 9 8 14 14 O 1.21280 * 119.99842 * 0.02562 * 13 12 9 15 15 C 1.50703 * 119.99889 * 180.27934 * 13 12 9 16 16 C 1.53007 * 109.46911 * 179.72507 * 15 13 12 17 17 C 1.50703 * 109.46911 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00024 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99464 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00492 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99666 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47214 * 89.99904 * 21 19 17 23 23 H 1.48499 * 109.47061 * 210.00256 * 21 19 17 24 24 H 1.48500 * 109.46711 * 329.99952 * 21 19 17 25 25 H 1.08990 * 109.46970 * 264.56283 * 1 2 3 26 26 H 1.09002 * 109.46764 * 24.56521 * 1 2 3 27 27 H 1.09000 * 109.46945 * 144.56272 * 1 2 3 28 28 H 1.08009 * 119.99505 * 0.02562 * 3 2 1 29 29 H 1.08007 * 119.99630 * 179.72838 * 4 3 2 30 30 H 1.08005 * 120.00094 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47292 * 276.14661 * 7 6 5 32 32 H 1.09002 * 109.47266 * 36.13988 * 7 6 5 33 33 H 1.09000 * 109.47330 * 156.14407 * 7 6 5 34 34 H 1.09002 * 109.47446 * 180.02562 * 11 9 8 35 35 H 1.09002 * 109.47040 * 299.99251 * 11 9 8 36 36 H 1.09000 * 109.47862 * 59.99574 * 11 9 8 37 37 H 0.97007 * 120.00012 * 349.84207 * 12 9 8 38 38 H 1.08999 * 109.47277 * 299.72483 * 15 13 12 39 39 H 1.09001 * 109.46949 * 59.72900 * 15 13 12 40 40 H 1.08999 * 109.47130 * 300.00066 * 16 15 13 41 41 H 1.09005 * 109.46832 * 59.99692 * 16 15 13 42 42 H 0.97001 * 120.00123 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0057 5 6 4.2717 0.0000 -0.0061 6 6 3.5806 -1.1972 -0.0004 7 6 4.3340 -2.5023 -0.0014 8 6 2.1982 -1.1971 0.0053 9 6 1.4446 -2.5022 0.0110 10 1 0.3798 -2.3064 0.1370 11 6 1.6761 -3.2305 -1.3145 12 7 1.9219 -3.3368 1.1164 13 6 1.2574 -4.4619 1.4469 14 8 0.2647 -4.7836 0.8289 15 6 1.7448 -5.3171 2.5881 16 6 0.8153 -6.5208 2.7564 17 6 1.3022 -7.3757 3.8980 18 1 2.1860 -7.0890 4.4486 19 6 0.6188 -8.5232 4.2400 20 7 -0.4576 -8.8721 3.5699 21 14 1.2220 -9.5826 5.6555 22 1 0.5898 -9.1267 6.9194 23 1 0.8580 -11.0000 5.4031 24 1 2.6978 -9.4632 5.7691 25 1 -0.3633 -0.0974 1.0230 26 1 -0.3633 0.9347 -0.4272 27 1 -0.3633 -0.8373 -0.5959 28 1 1.6582 2.1325 0.0004 29 1 4.1206 2.1325 -0.0101 30 1 5.3518 -0.0001 -0.0110 31 1 4.6060 -2.7640 -1.0240 32 1 5.2374 -2.4009 0.6000 33 1 3.7037 -3.2860 0.4188 34 1 1.1307 -4.1742 -1.3106 35 1 1.3210 -2.6095 -2.1370 36 1 2.7409 -3.4263 -1.4405 37 1 2.7160 -3.0797 1.6106 38 1 2.7554 -5.6655 2.3752 39 1 1.7487 -4.7299 3.5063 40 1 -0.1954 -6.1724 2.9693 41 1 0.8113 -7.1080 1.8381 42 1 -0.9381 -9.6797 3.8103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360663896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:02 Heat of formation + Delta-G solvation = -26.514929 kcal Electronic energy + Delta-G solvation = -21098.040524 eV Core-core repulsion = 18042.416982 eV Total energy + Delta-G solvation = -3055.623542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.56033 -38.84322 -35.56712 -33.81942 -33.41869 -31.98351 -30.90326 -29.58007 -27.56658 -26.87290 -25.73285 -23.61144 -21.69203 -20.87748 -20.47208 -19.61875 -17.09812 -16.51718 -16.22613 -15.58819 -15.13447 -14.82173 -14.50472 -14.39688 -14.21003 -13.58907 -13.30700 -13.19853 -13.12354 -12.98281 -12.75939 -12.21314 -12.17026 -12.03905 -11.85216 -11.68141 -11.47952 -11.18072 -11.11012 -10.91900 -10.59061 -10.53142 -9.93471 -9.63879 -9.15697 -9.03557 -8.81168 -8.72410 -8.62267 -8.30350 -5.94608 -3.98883 1.12865 1.18736 3.27381 3.34360 3.38992 3.41122 3.43598 3.75386 4.48009 4.48957 4.62522 4.70318 4.78262 5.09767 5.10712 5.26128 5.31631 5.40336 5.43932 5.45769 5.51140 5.52755 5.60884 5.69006 5.75966 5.82978 5.93011 6.01076 6.12248 6.24493 6.25806 6.29900 6.34569 6.37906 6.50740 6.80341 6.84686 6.91760 7.76145 7.88487 7.90940 8.09006 8.40611 8.80830 9.09820 9.64579 11.16294 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.003483 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.886374 B = 8037.551825 C = 8353.509864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.067 4.067 3 C -0.128 4.128 4 C -0.113 4.113 5 C -0.128 4.128 6 C -0.067 4.067 7 C -0.145 4.145 8 C -0.095 4.095 9 C 0.183 3.817 10 H 0.089 0.911 11 C -0.167 4.167 12 N -0.738 5.738 13 C 0.509 3.491 14 O -0.531 6.531 15 C -0.131 4.131 16 C 0.038 3.962 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.399 0.601 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.846 20.651 -8.678 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.131 4.131 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.202 4.202 8 C -0.095 4.095 9 C 0.078 3.922 10 H 0.107 0.893 11 C -0.225 4.225 12 N -0.395 5.395 13 C 0.298 3.702 14 O -0.406 6.406 15 C -0.171 4.171 16 C 0.000 4.000 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.237 0.763 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.958 20.247 -9.134 23.595 hybrid contribution 0.769 -0.283 0.972 1.271 sum 8.727 19.964 -8.162 23.267 Atomic orbital electron populations 1.20904 0.91092 1.02919 1.02952 1.19773 0.96123 0.92366 0.98475 1.20987 0.94255 0.97270 1.02100 1.21109 0.94288 0.97913 0.99781 1.20995 0.99715 0.91922 1.01977 1.19767 0.92916 0.95606 0.98430 1.21423 1.00596 0.95202 1.02995 1.19710 0.93156 0.94210 1.02420 1.19735 0.98289 0.86470 0.87673 0.89313 1.22277 1.02719 1.01755 0.95757 1.46750 1.31741 1.25683 1.35366 1.21586 0.83034 0.80361 0.85264 1.90655 1.25536 1.70968 1.53475 1.21885 1.02340 0.98511 0.94370 1.18892 0.94005 0.89905 0.97179 1.21230 1.11596 1.07798 1.15885 0.92632 1.25022 0.94993 0.97700 0.96669 1.69997 1.17800 1.24819 1.40222 0.86598 0.79035 0.79728 0.82627 1.20692 1.21239 1.19890 0.90742 0.91467 0.90830 0.86109 0.86181 0.86111 0.90877 0.91396 0.88936 0.90635 0.92236 0.91935 0.76328 0.90295 0.90306 0.95837 0.95794 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.13 36.01 0.33 -0.83 16 2 C -0.07 -0.72 5.88 -104.62 -0.62 -1.33 16 3 C -0.13 -1.21 9.68 -39.58 -0.38 -1.59 16 4 C -0.11 -1.01 10.05 -39.59 -0.40 -1.41 16 5 C -0.13 -1.21 9.73 -39.58 -0.39 -1.59 16 6 C -0.07 -0.71 5.58 -104.63 -0.58 -1.29 16 7 C -0.15 -1.39 7.85 36.00 0.28 -1.10 16 8 C -0.09 -1.10 4.89 -104.62 -0.51 -1.61 16 9 C 0.18 2.44 2.25 -69.08 -0.16 2.28 16 10 H 0.09 1.29 5.65 -51.93 -0.29 1.00 16 11 C -0.17 -2.20 8.98 37.16 0.33 -1.86 16 12 N -0.74 -10.70 3.74 -54.93 -0.21 -10.90 16 13 C 0.51 9.74 7.59 -10.98 -0.08 9.65 16 14 O -0.53 -12.27 14.77 5.56 0.08 -12.19 16 15 C -0.13 -2.67 5.64 -27.88 -0.16 -2.82 16 16 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 17 C -0.53 -14.99 9.11 -34.44 -0.31 -15.31 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.50 13.29 55.43 0.74 -26.77 16 21 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 27 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 28 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 29 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 30 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 32 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.09 1.00 3.81 -51.93 -0.20 0.80 16 34 H 0.07 1.20 6.95 -51.93 -0.36 0.84 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.75 5.51 -51.93 -0.29 0.46 16 37 H 0.40 4.92 6.30 -40.82 -0.26 4.66 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -33.35 336.19 -8.51 -41.86 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.31 Total: 2.55 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -2.86 Total: -16.33 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.53 Total: -37.67 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.35 -8.51 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360663896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.344 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds