Wall clock time and date at job start Mon Mar 30 2020 02:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38234 * 120.00430 * 2 1 4 4 C 1.38236 * 120.00294 * 180.27215 * 3 2 1 5 5 C 1.38227 * 119.99925 * 359.74919 * 4 3 2 6 6 C 1.38239 * 120.00360 * 359.97438 * 5 4 3 7 7 C 1.50691 * 120.00458 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99414 * 0.02562 * 6 5 4 9 9 C 1.50702 * 120.00074 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47631 * 173.18353 * 9 8 6 11 11 C 1.53001 * 109.46747 * 293.18788 * 9 8 6 12 12 N 1.46499 * 109.47097 * 53.17784 * 9 8 6 13 13 C 1.34777 * 120.00056 * 169.83589 * 12 9 8 14 14 O 1.21280 * 119.99842 * 0.02562 * 13 12 9 15 15 C 1.50703 * 119.99889 * 180.27934 * 13 12 9 16 16 C 1.53007 * 109.46911 * 179.72507 * 15 13 12 17 17 C 1.50703 * 109.46911 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00024 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99464 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00492 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99666 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47214 * 89.99904 * 21 19 17 23 23 H 1.48499 * 109.47061 * 210.00256 * 21 19 17 24 24 H 1.48500 * 109.46711 * 329.99952 * 21 19 17 25 25 H 1.08990 * 109.46970 * 264.56283 * 1 2 3 26 26 H 1.09002 * 109.46764 * 24.56521 * 1 2 3 27 27 H 1.09000 * 109.46945 * 144.56272 * 1 2 3 28 28 H 1.08009 * 119.99505 * 0.02562 * 3 2 1 29 29 H 1.08007 * 119.99630 * 179.72838 * 4 3 2 30 30 H 1.08005 * 120.00094 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47292 * 276.14661 * 7 6 5 32 32 H 1.09002 * 109.47266 * 36.13988 * 7 6 5 33 33 H 1.09000 * 109.47330 * 156.14407 * 7 6 5 34 34 H 1.09002 * 109.47446 * 180.02562 * 11 9 8 35 35 H 1.09002 * 109.47040 * 299.99251 * 11 9 8 36 36 H 1.09000 * 109.47862 * 59.99574 * 11 9 8 37 37 H 0.97007 * 120.00012 * 349.84207 * 12 9 8 38 38 H 1.08999 * 109.47277 * 299.72483 * 15 13 12 39 39 H 1.09001 * 109.46949 * 59.72900 * 15 13 12 40 40 H 1.08999 * 109.47130 * 300.00066 * 16 15 13 41 41 H 1.09005 * 109.46832 * 59.99692 * 16 15 13 42 42 H 0.97001 * 120.00123 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0057 5 6 4.2717 0.0000 -0.0061 6 6 3.5806 -1.1972 -0.0004 7 6 4.3340 -2.5023 -0.0014 8 6 2.1982 -1.1971 0.0053 9 6 1.4446 -2.5022 0.0110 10 1 0.3798 -2.3064 0.1370 11 6 1.6761 -3.2305 -1.3145 12 7 1.9219 -3.3368 1.1164 13 6 1.2574 -4.4619 1.4469 14 8 0.2647 -4.7836 0.8289 15 6 1.7448 -5.3171 2.5881 16 6 0.8153 -6.5208 2.7564 17 6 1.3022 -7.3757 3.8980 18 1 2.1860 -7.0890 4.4486 19 6 0.6188 -8.5232 4.2400 20 7 -0.4576 -8.8721 3.5699 21 14 1.2220 -9.5826 5.6555 22 1 0.5898 -9.1267 6.9194 23 1 0.8580 -11.0000 5.4031 24 1 2.6978 -9.4632 5.7691 25 1 -0.3633 -0.0974 1.0230 26 1 -0.3633 0.9347 -0.4272 27 1 -0.3633 -0.8373 -0.5959 28 1 1.6582 2.1325 0.0004 29 1 4.1206 2.1325 -0.0101 30 1 5.3518 -0.0001 -0.0110 31 1 4.6060 -2.7640 -1.0240 32 1 5.2374 -2.4009 0.6000 33 1 3.7037 -3.2860 0.4188 34 1 1.1307 -4.1742 -1.3106 35 1 1.3210 -2.6095 -2.1370 36 1 2.7409 -3.4263 -1.4405 37 1 2.7160 -3.0797 1.6106 38 1 2.7554 -5.6655 2.3752 39 1 1.7487 -4.7299 3.5063 40 1 -0.1954 -6.1724 2.9693 41 1 0.8113 -7.1080 1.8381 42 1 -0.9381 -9.6797 3.8103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360663896.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:01 Heat of formation + Delta-G solvation = -46.057682 kcal Electronic energy + Delta-G solvation = -21098.887961 eV Core-core repulsion = 18042.416982 eV Total energy + Delta-G solvation = -3056.470980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58082 -40.14148 -36.76138 -35.53496 -34.55872 -33.39799 -32.51371 -30.70583 -28.38226 -27.70776 -27.58676 -24.87319 -23.33940 -21.64985 -21.51025 -21.11041 -18.86269 -17.76274 -17.57805 -16.78307 -16.49548 -16.37819 -16.03600 -15.37540 -15.05793 -14.86440 -14.55792 -14.41808 -14.15634 -13.86902 -13.81336 -13.66379 -13.60969 -13.21520 -13.06315 -12.82218 -12.72883 -12.56257 -12.45612 -12.31927 -11.90951 -11.89525 -11.62847 -11.48295 -11.28828 -10.66474 -10.56133 -10.04056 -9.56684 -9.44373 -8.17136 -6.31128 0.34936 0.45510 1.42565 1.45327 1.56244 1.72655 2.24969 2.45253 2.84234 3.15807 3.56505 3.87154 3.94980 4.04251 4.12749 4.16983 4.31584 4.44241 4.49381 4.52813 4.56536 4.62965 4.68861 4.72493 4.78529 4.82785 4.92534 4.97789 5.01512 5.09794 5.15321 5.27830 5.38088 5.45340 5.52000 5.60800 5.63328 5.64604 5.77495 5.86561 6.11720 6.18796 6.58580 6.87286 7.34211 7.39211 8.95453 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.003483 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.886374 B = 8037.551825 C = 8353.509864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 C -0.132 4.132 4 C -0.110 4.110 5 C -0.132 4.132 6 C -0.074 4.074 7 C -0.144 4.144 8 C -0.112 4.112 9 C 0.184 3.816 10 H 0.073 0.927 11 C -0.161 4.161 12 N -0.713 5.713 13 C 0.511 3.489 14 O -0.581 6.581 15 C -0.121 4.121 16 C 0.044 3.956 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.974 3.026 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.255 1.255 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.104 0.896 39 H 0.101 0.899 40 H -0.018 1.018 41 H -0.016 1.016 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.693 22.595 -7.747 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.128 4.128 5 C -0.149 4.149 6 C -0.074 4.074 7 C -0.200 4.200 8 C -0.112 4.112 9 C 0.080 3.920 10 H 0.091 0.909 11 C -0.219 4.219 12 N -0.370 5.370 13 C 0.300 3.700 14 O -0.460 6.460 15 C -0.161 4.161 16 C 0.006 3.994 17 C -0.581 4.581 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.179 1.179 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.159 0.841 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.254 0.746 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.000 1.000 41 H 0.002 0.998 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.859 22.245 -8.199 26.076 hybrid contribution -0.102 -0.781 0.619 1.001 sum 10.757 21.464 -7.580 25.177 Atomic orbital electron populations 1.20904 0.90892 1.03504 1.02540 1.19959 0.96556 0.92725 0.98799 1.21271 0.94845 0.97462 1.01449 1.21487 0.94221 0.98953 0.98165 1.21286 1.00904 0.91514 1.01240 1.19910 0.92439 0.96607 0.98487 1.21390 1.00884 0.94187 1.03559 1.19562 0.93710 0.93189 1.04770 1.19735 0.97856 0.87400 0.86964 0.90943 1.22211 1.03060 1.00336 0.96326 1.46498 1.31212 1.24027 1.35238 1.21332 0.82599 0.81357 0.84704 1.90645 1.27819 1.72467 1.55069 1.21660 1.01744 0.96560 0.96089 1.18673 0.93532 0.92019 0.95166 1.21717 1.12135 1.08090 1.16149 0.90660 1.26133 0.94981 0.99480 0.99844 1.70177 1.19510 1.25582 1.42468 0.85325 0.79352 0.77127 0.78464 1.19756 1.21184 1.17873 0.91335 0.89475 0.92004 0.84095 0.83531 0.83965 0.90392 0.89531 0.90596 0.93943 0.90791 0.90628 0.74627 0.87743 0.88076 0.99981 0.99792 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 9.13 71.24 0.65 -1.62 16 2 C -0.08 -1.61 5.88 -19.86 -0.12 -1.72 16 3 C -0.13 -2.14 9.68 22.27 0.22 -1.92 16 4 C -0.11 -1.58 10.05 22.27 0.22 -1.36 16 5 C -0.13 -2.04 9.73 22.27 0.22 -1.82 16 6 C -0.07 -1.40 5.58 -19.87 -0.11 -1.51 16 7 C -0.14 -2.41 7.85 71.23 0.56 -1.85 16 8 C -0.11 -2.47 4.89 -19.86 -0.10 -2.57 16 9 C 0.18 4.98 2.25 44.25 0.10 5.08 16 10 H 0.07 2.21 5.65 -2.39 -0.01 2.20 16 11 C -0.16 -4.33 8.98 71.98 0.65 -3.69 16 12 N -0.71 -20.60 3.74 -446.09 -1.67 -22.27 16 13 C 0.51 20.14 7.59 87.66 0.67 20.81 16 14 O -0.58 -28.55 14.77 -3.03 -0.04 -28.60 16 15 C -0.12 -4.93 5.64 29.85 0.17 -4.76 16 16 C 0.04 2.46 4.26 29.85 0.13 2.59 16 17 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 18 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 19 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 20 N -0.94 -59.89 13.29 21.45 0.28 -59.60 16 21 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.22 8.05 -2.39 -0.02 1.20 16 27 H 0.06 1.27 6.57 -2.39 -0.02 1.26 16 28 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 30 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.08 1.23 7.53 -2.38 -0.02 1.22 16 32 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 33 H 0.08 1.51 3.81 -2.39 -0.01 1.50 16 34 H 0.04 1.42 6.95 -2.39 -0.02 1.40 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 1.79 5.51 -2.39 -0.01 1.77 16 37 H 0.41 9.63 6.30 -92.70 -0.58 9.05 16 38 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 40 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 41 H -0.02 -1.04 8.10 -2.38 -0.02 -1.06 16 42 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -75.65 336.19 4.98 -70.68 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.43 Total: 18.43 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 3.94 Total: -25.21 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.38 Total: -81.87 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.04 Total: -28.60 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -75.65 4.98 -70.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360663896.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.621 kcal (2) G-P(sol) polarization free energy of solvation -75.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds