Wall clock time and date at job start Mon Mar 30 2020 02:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38237 * 120.00239 * 2 1 4 4 C 1.38227 * 120.00270 * 180.22828 * 3 2 1 5 5 C 1.38245 * 120.00033 * 359.80594 * 4 3 2 6 6 C 1.38235 * 119.99591 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.99706 * 179.97438 * 6 5 4 8 8 C 1.38232 * 119.99931 * 179.79966 * 2 1 3 9 9 C 1.50705 * 120.00152 * 0.02562 * 8 2 1 10 10 H 1.08996 * 109.46951 * 192.94373 * 9 8 2 11 11 C 1.53000 * 109.47223 * 72.94001 * 9 8 2 12 12 N 1.46504 * 109.46547 * 312.93932 * 9 8 2 13 13 C 1.34779 * 119.99394 * 198.36223 * 12 9 8 14 14 O 1.21282 * 120.00321 * 359.97438 * 13 12 9 15 15 C 1.50701 * 119.99600 * 180.02562 * 13 12 9 16 16 C 1.53002 * 109.47171 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47171 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00031 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99784 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00286 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46892 * 90.00161 * 21 19 17 23 23 H 1.48503 * 109.47517 * 210.00262 * 21 19 17 24 24 H 1.48503 * 109.47081 * 330.00577 * 21 19 17 25 25 H 1.08996 * 109.47038 * 276.02076 * 1 2 3 26 26 H 1.09006 * 109.46791 * 36.02123 * 1 2 3 27 27 H 1.08999 * 109.46766 * 156.02014 * 1 2 3 28 28 H 1.08004 * 119.99740 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.00296 * 179.78867 * 4 3 2 30 30 H 1.07995 * 119.99918 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.47384 * 263.74950 * 7 6 5 32 32 H 1.08995 * 109.47717 * 23.74927 * 7 6 5 33 33 H 1.09004 * 109.47467 * 143.75179 * 7 6 5 34 34 H 1.08995 * 109.47378 * 65.73634 * 11 9 8 35 35 H 1.08998 * 109.47068 * 185.73953 * 11 9 8 36 36 H 1.09003 * 109.46674 * 305.74017 * 11 9 8 37 37 H 0.97002 * 120.00174 * 18.36351 * 12 9 8 38 38 H 1.08998 * 109.47270 * 300.00231 * 15 13 12 39 39 H 1.09006 * 109.47166 * 60.00226 * 15 13 12 40 40 H 1.09004 * 109.46724 * 300.00119 * 16 15 13 41 41 H 1.08999 * 109.46891 * 59.99746 * 16 15 13 42 42 H 0.97001 * 120.00338 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0048 5 6 4.2718 -0.0001 -0.0055 6 6 3.5805 -1.1972 -0.0020 7 6 4.3340 -2.5022 -0.0033 8 6 2.1982 -1.1971 0.0042 9 6 1.4447 -2.5023 0.0082 10 1 2.1303 -3.3169 0.2413 11 6 0.8237 -2.7369 -1.3703 12 7 0.3853 -2.4513 1.0188 13 6 -0.1733 -3.5929 1.4676 14 8 0.2008 -4.6622 1.0345 15 6 -1.2634 -3.5404 2.5068 16 6 -1.7207 -4.9624 2.8385 17 6 -2.8113 -4.9099 3.8772 18 1 -3.1452 -3.9577 4.2619 19 6 -3.3835 -6.0776 4.3355 20 7 -2.9772 -7.2372 3.8666 21 14 -4.7348 -6.0127 5.6235 22 1 -6.0556 -5.9216 4.9510 23 1 -4.6862 -7.2425 6.4545 24 1 -4.5369 -4.8222 6.4890 25 1 -0.3633 0.1078 1.0220 26 1 -0.3633 0.8312 -0.6044 27 1 -0.3633 -0.9390 -0.4177 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1324 -0.0082 30 1 5.3517 0.0000 -0.0096 31 1 4.4153 -2.8739 -1.0248 32 1 5.3317 -2.3463 0.4069 33 1 3.8000 -3.2308 0.6069 34 1 1.6153 -2.8763 -2.1065 35 1 0.1956 -3.6272 -1.3391 36 1 0.2177 -1.8742 -1.6474 37 1 0.0858 -1.5960 1.3649 38 1 -0.8829 -3.0610 3.4087 39 1 -2.1071 -2.9689 2.1198 40 1 -2.1013 -5.4413 1.9363 41 1 -0.8772 -5.5343 3.2252 42 1 -3.3795 -8.0588 4.1893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360663897.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:04 Heat of formation + Delta-G solvation = -48.058295 kcal Electronic energy + Delta-G solvation = -21100.014978 eV Core-core repulsion = 18043.457246 eV Total energy + Delta-G solvation = -3056.557733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57131 -40.13360 -36.77501 -35.53971 -34.58881 -33.36822 -32.49016 -30.77591 -28.38729 -27.72424 -27.59944 -24.86947 -23.34145 -21.65290 -21.53402 -21.06759 -18.85677 -17.74437 -17.58845 -16.77610 -16.49402 -16.38885 -16.00985 -15.40302 -15.25646 -14.85868 -14.47193 -14.38305 -14.15543 -13.91149 -13.82208 -13.72610 -13.61126 -13.21184 -13.05506 -12.82802 -12.72489 -12.51352 -12.43516 -12.42237 -11.92235 -11.91177 -11.63444 -11.39092 -11.29436 -10.69987 -10.56311 -10.09445 -9.56095 -9.45306 -8.17253 -6.31354 0.36247 0.44975 1.42464 1.45341 1.56255 1.73032 2.26403 2.45490 2.82703 3.15615 3.55722 3.87071 3.93611 4.04316 4.11869 4.13346 4.30451 4.42194 4.49501 4.50960 4.55544 4.60742 4.67110 4.71576 4.75109 4.80766 4.87636 4.98747 5.02995 5.09611 5.12039 5.26860 5.38820 5.46190 5.52009 5.60689 5.62481 5.64027 5.75841 5.86222 6.11615 6.18500 6.60578 6.86987 7.34822 7.39019 8.95382 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.003507 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.703634 B = 7981.651011 C = 8348.807873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.130 4.130 4 C -0.112 4.112 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.122 4.122 8 C -0.110 4.110 9 C 0.180 3.820 10 H 0.075 0.925 11 C -0.158 4.158 12 N -0.717 5.717 13 C 0.511 3.489 14 O -0.584 6.584 15 C -0.121 4.121 16 C 0.044 3.956 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.255 1.255 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.101 0.899 39 H 0.105 0.895 40 H -0.017 1.017 41 H -0.018 1.018 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.768 21.432 -9.399 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.130 4.130 5 C -0.149 4.149 6 C -0.083 4.083 7 C -0.179 4.179 8 C -0.111 4.111 9 C 0.076 3.924 10 H 0.093 0.907 11 C -0.215 4.215 12 N -0.374 5.374 13 C 0.299 3.701 14 O -0.464 6.464 15 C -0.161 4.161 16 C 0.006 3.994 17 C -0.581 4.581 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.798 3.202 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.179 1.179 25 H 0.102 0.898 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.253 0.747 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.002 0.998 41 H 0.000 1.000 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.012 20.507 -9.693 26.149 hybrid contribution -0.656 -0.471 0.634 1.026 sum 12.355 20.036 -9.059 25.223 Atomic orbital electron populations 1.21315 0.90623 1.04393 1.03515 1.19915 0.96693 0.92415 0.98896 1.21290 0.94698 0.97720 1.01061 1.21488 0.94439 0.98758 0.98335 1.21272 1.00803 0.91501 1.01347 1.19940 0.92706 0.96597 0.99042 1.20917 1.00303 0.93765 1.02868 1.19597 0.93573 0.93517 1.04401 1.19784 0.88483 0.95480 0.88688 0.90695 1.22219 1.01585 1.01996 0.95745 1.46530 1.39140 1.09058 1.42667 1.21346 0.83038 0.83502 0.82203 1.90643 1.64154 1.31438 1.60143 1.21657 0.96433 1.00683 0.97289 1.18672 0.94595 0.91268 0.94863 1.21714 1.19798 0.93521 1.23063 0.90632 1.26141 1.00009 0.94996 0.99316 1.70181 1.44086 0.98391 1.45091 0.85316 0.78549 0.77971 0.78373 1.19648 1.21207 1.17921 0.89775 0.89264 0.90793 0.83822 0.83519 0.84115 0.90249 0.89823 0.92740 0.90646 0.94038 0.90361 0.74724 0.88120 0.87692 0.99825 0.99992 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 7.90 71.24 0.56 -1.71 16 2 C -0.08 -1.48 5.62 -19.87 -0.11 -1.59 16 3 C -0.13 -2.01 9.73 22.27 0.22 -1.79 16 4 C -0.11 -1.63 10.05 22.27 0.22 -1.41 16 5 C -0.13 -2.17 9.68 22.27 0.22 -1.95 16 6 C -0.08 -1.69 5.88 -19.87 -0.12 -1.81 16 7 C -0.12 -2.33 9.36 71.23 0.67 -1.67 16 8 C -0.11 -2.48 4.93 -19.86 -0.10 -2.58 16 9 C 0.18 4.91 2.29 44.25 0.10 5.01 16 10 H 0.08 2.37 5.24 -2.39 -0.01 2.36 16 11 C -0.16 -4.08 9.03 71.98 0.65 -3.43 16 12 N -0.72 -21.07 4.13 -446.08 -1.84 -22.91 16 13 C 0.51 20.42 7.62 87.66 0.67 21.09 16 14 O -0.58 -29.12 15.27 -3.04 -0.05 -29.17 16 15 C -0.12 -4.98 5.64 29.85 0.17 -4.81 16 16 C 0.04 2.47 4.26 29.85 0.13 2.60 16 17 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 18 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 19 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 20 N -0.94 -60.01 13.29 21.45 0.28 -59.73 16 21 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 H 0.08 1.18 7.21 -2.39 -0.02 1.16 16 26 H 0.09 1.08 8.12 -2.38 -0.02 1.06 16 27 H 0.07 1.40 3.91 -2.39 -0.01 1.39 16 28 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 30 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.27 8.04 -2.39 -0.02 1.25 16 33 H 0.05 1.27 6.25 -2.38 -0.01 1.25 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.32 7.55 -2.39 -0.02 1.30 16 36 H 0.08 1.74 5.78 -2.39 -0.01 1.72 16 37 H 0.41 9.71 5.21 -92.71 -0.48 9.23 16 38 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.10 3.76 8.14 -2.38 -0.02 3.74 16 40 H -0.02 -1.06 8.10 -2.38 -0.02 -1.08 16 41 H -0.02 -1.18 8.10 -2.39 -0.02 -1.19 16 42 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -76.54 336.39 4.93 -71.61 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.53 Total: 18.60 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 3.97 Total: -25.03 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.56 Total: -82.64 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.05 Total: -29.17 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -76.54 4.93 -71.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360663897.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.552 kcal (2) G-P(sol) polarization free energy of solvation -76.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds