Wall clock time and date at job start Mon Mar 30 2020 01:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48500 * 109.47369 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46964 * 300.00210 * 3 2 1 6 6 H 1.48500 * 109.47172 * 60.00189 * 3 2 1 7 7 C 1.37875 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00241 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46997 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.47064 * 180.02562 * 10 9 7 12 12 C 1.46828 * 110.98405 * 294.21535 * 11 10 9 13 13 C 1.53031 * 109.51741 * 174.15729 * 12 11 10 14 14 C 1.53117 * 109.27983 * 59.17806 * 13 12 11 15 15 C 1.53119 * 109.16074 * 302.34621 * 14 13 12 16 16 H 1.09000 * 109.53243 * 297.69715 * 15 14 13 17 17 O 1.42898 * 109.50414 * 177.59749 * 15 14 13 18 18 C 1.35900 * 117.00087 * 85.02506 * 17 15 14 19 19 C 1.38734 * 120.05719 * 174.24486 * 18 17 15 20 20 C 1.38142 * 119.94770 * 179.74312 * 19 18 17 21 21 C 1.38265 * 120.05337 * 0.50625 * 20 19 18 22 22 C 1.38275 * 120.11302 * 359.76519 * 21 20 19 23 23 C 1.38146 * 120.05412 * 359.97438 * 22 21 20 24 24 C 1.46845 * 110.99655 * 170.00182 * 11 10 9 25 25 H 0.96993 * 120.00213 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46904 * 59.99731 * 9 7 2 27 27 H 1.08999 * 109.47177 * 300.00178 * 9 7 2 28 28 H 1.09004 * 109.47109 * 59.99861 * 10 9 7 29 29 H 1.08999 * 109.47222 * 300.00052 * 10 9 7 30 30 H 1.09000 * 109.46611 * 54.13598 * 12 11 10 31 31 H 1.09003 * 109.45337 * 294.16428 * 12 11 10 32 32 H 1.09001 * 109.50036 * 299.23482 * 13 12 11 33 33 H 1.08999 * 109.50144 * 179.11986 * 13 12 11 34 34 H 1.09003 * 109.51970 * 182.44327 * 14 13 12 35 35 H 1.08994 * 109.52155 * 62.25081 * 14 13 12 36 36 H 1.08009 * 120.02219 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.97419 * 180.27562 * 20 19 18 38 38 H 1.08002 * 119.94910 * 179.74833 * 21 20 19 39 39 H 1.07993 * 119.97550 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.03273 * 180.02562 * 23 22 21 41 41 H 1.08993 * 109.46291 * 65.82801 * 24 11 10 42 42 H 1.08999 * 109.46266 * 305.83727 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 0.7606 -5.1089 1.2488 13 6 -0.1037 -6.3682 1.1547 14 6 0.7961 -7.5814 0.9038 15 6 1.6022 -7.3529 -0.3778 16 1 0.9222 -7.2638 -1.2250 17 8 2.4856 -8.4561 -0.5889 18 6 1.9762 -9.5404 -1.2305 19 6 2.8062 -10.5973 -1.5751 20 6 2.2850 -11.7007 -2.2225 21 6 0.9393 -11.7477 -2.5365 22 6 0.1110 -10.6931 -2.1993 23 6 0.6263 -9.5898 -1.5469 24 6 2.4172 -6.0649 -0.2392 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6042 0.8895 29 1 2.8721 -3.6043 -0.8905 30 1 0.1217 -4.2412 1.4132 31 1 1.4585 -5.2087 2.0802 32 1 -0.8110 -6.2634 0.3320 33 1 -0.6487 -6.5062 2.0885 34 1 0.1810 -8.4744 0.7929 35 1 1.4776 -7.7095 1.7448 36 1 3.8583 -10.5591 -1.3339 37 1 2.9298 -12.5257 -2.4869 38 1 0.5344 -12.6094 -3.0463 39 1 -0.9397 -10.7320 -2.4460 40 1 -0.0210 -8.7665 -1.2833 41 1 3.1070 -6.1602 0.5993 42 1 2.9811 -5.8916 -1.1557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364223247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:23 Heat of formation + Delta-G solvation = -37.397060 kcal Electronic energy + Delta-G solvation = -20869.595054 eV Core-core repulsion = 17813.499627 eV Total energy + Delta-G solvation = -3056.095427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46486 -39.75717 -38.10104 -35.67680 -34.19062 -32.06912 -31.78085 -30.96381 -30.08835 -26.95760 -24.97810 -24.43843 -23.33555 -23.00761 -21.74580 -20.84429 -19.22138 -18.58693 -17.38553 -16.76700 -16.58469 -16.44932 -16.07191 -16.06207 -15.62473 -15.21417 -14.77330 -14.50073 -14.33747 -14.15635 -14.03665 -14.01113 -13.51635 -13.20663 -12.87574 -12.68686 -12.49564 -12.45113 -12.38750 -12.07103 -11.84014 -11.76255 -11.53365 -11.40260 -11.26043 -11.13133 -10.54082 -9.91776 -9.29966 -9.13124 -8.20585 -6.31483 0.42063 0.51776 1.40102 1.40574 1.53691 2.00463 2.40777 2.87726 3.13001 3.14304 3.61323 3.69400 3.91092 3.95404 4.00155 4.11318 4.16051 4.31589 4.41515 4.44472 4.49029 4.51861 4.54279 4.62242 4.71292 4.80134 4.82070 4.91509 4.96737 5.01805 5.10154 5.11812 5.28935 5.42491 5.44978 5.52014 5.63066 5.65141 5.76425 5.89524 6.06156 6.18829 6.29645 6.48370 6.85346 7.37478 8.91656 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037838 B = 0.003053 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.822937 B = 9168.794120 C = 9356.584677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.080 3.920 11 N -0.543 5.543 12 C 0.048 3.952 13 C -0.105 4.105 14 C -0.134 4.134 15 C 0.097 3.903 16 H 0.080 0.920 17 O -0.325 6.325 18 C 0.110 3.890 19 C -0.171 4.171 20 C -0.083 4.083 21 C -0.163 4.163 22 C -0.087 4.087 23 C -0.221 4.221 24 C 0.064 3.936 25 H 0.264 0.736 26 H -0.006 1.006 27 H -0.001 1.001 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.131 0.869 41 H 0.039 0.961 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.568 -23.837 -1.751 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.047 4.047 11 N -0.269 5.269 12 C -0.080 4.080 13 C -0.142 4.142 14 C -0.172 4.172 15 C 0.041 3.959 16 H 0.098 0.902 17 O -0.238 6.238 18 C 0.065 3.935 19 C -0.189 4.189 20 C -0.101 4.101 21 C -0.181 4.181 22 C -0.105 4.105 23 C -0.240 4.240 24 C -0.064 4.064 25 H 0.073 0.927 26 H 0.012 0.988 27 H 0.017 0.983 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.057 0.943 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.295 -23.687 -2.054 23.811 hybrid contribution 0.625 1.365 0.677 1.647 sum 1.920 -22.322 -1.378 22.447 Atomic orbital electron populations 1.70104 1.07730 1.27718 1.51455 1.25937 0.95760 1.03234 0.94658 0.85397 0.79029 0.78780 0.77811 1.18684 1.20354 1.20306 1.21642 0.93509 0.92284 1.50838 0.92283 1.18921 0.94125 0.91597 0.95333 1.21985 0.95522 0.87891 0.99267 1.61824 1.27469 1.01590 1.35976 1.22204 0.96897 0.99253 0.89602 1.21510 0.97397 0.91960 1.03380 1.22083 0.98791 0.99173 0.97109 1.22292 0.91015 0.83759 0.98844 0.90244 1.86009 1.40931 1.24157 1.72752 1.19353 0.92904 0.87842 0.93414 1.20724 1.00273 0.93702 1.04241 1.21312 0.96033 0.97007 0.95708 1.21438 0.93889 0.99984 1.02827 1.21301 1.01025 0.92505 0.95682 1.21523 0.94433 1.01739 1.06274 1.21897 0.93879 0.89054 1.01576 0.92733 0.98772 0.98305 0.95923 0.91760 0.91670 0.94964 0.91107 0.88906 0.89875 0.91207 0.84899 0.82840 0.83419 0.83872 0.85136 0.94265 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.04 2.01 4.90 29.85 0.15 2.16 16 10 C 0.08 3.46 4.90 86.30 0.42 3.88 16 11 N -0.54 -19.85 4.66 -896.41 -4.17 -24.02 16 12 C 0.05 1.61 5.29 86.33 0.46 2.06 16 13 C -0.10 -2.66 6.09 30.64 0.19 -2.47 16 14 C -0.13 -3.15 5.28 30.67 0.16 -2.99 16 15 C 0.10 2.61 2.27 30.65 0.07 2.68 16 16 H 0.08 2.17 6.32 -2.39 -0.02 2.16 16 17 O -0.32 -8.86 9.80 -92.42 -0.91 -9.77 16 18 C 0.11 2.68 6.60 22.51 0.15 2.83 16 19 C -0.17 -3.54 9.99 22.37 0.22 -3.32 16 20 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 21 C -0.16 -2.48 10.04 22.28 0.22 -2.26 16 22 C -0.09 -1.52 10.04 22.26 0.22 -1.30 16 23 C -0.22 -4.81 8.27 22.37 0.19 -4.63 16 24 C 0.06 1.99 5.11 86.33 0.44 2.43 16 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.00 -0.07 6.43 -2.39 -0.02 -0.09 16 28 H 0.02 0.96 8.12 -2.38 -0.02 0.94 16 29 H 0.06 2.71 7.99 -2.39 -0.02 2.70 16 30 H 0.06 2.51 6.21 -2.39 -0.01 2.50 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.72 6.89 -2.39 -0.02 1.70 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 38 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.13 2.77 5.40 -2.91 -0.02 2.76 16 41 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.08 2.41 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -65.56 334.52 2.02 -63.53 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.98 Total: 12.65 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 3.81 Total: -32.42 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -3.89 Total: -80.44 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.91 Total: -9.77 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.56 2.02 -63.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364223247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.137 kcal (2) G-P(sol) polarization free energy of solvation -65.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds