Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48496 * 109.47483 * 240.00571 * 3 2 1 5 5 H 1.48497 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47088 * 120.00205 * 3 2 1 7 7 C 1.37872 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46893 * 179.97438 * 10 9 7 12 12 C 1.46841 * 110.99627 * 293.94757 * 11 10 9 13 13 C 1.53045 * 109.52206 * 185.84174 * 12 11 10 14 14 C 1.53124 * 109.27423 * 300.82237 * 13 12 11 15 15 C 1.53112 * 109.16174 * 57.65631 * 14 13 12 16 16 H 1.08996 * 109.50602 * 62.28199 * 15 14 13 17 17 O 1.42902 * 109.50384 * 182.40435 * 15 14 13 18 18 C 1.35905 * 116.99659 * 275.25317 * 17 15 14 19 19 C 1.38730 * 120.05430 * 5.08568 * 18 17 15 20 20 C 1.38150 * 119.93754 * 179.74038 * 19 18 17 21 21 C 1.38266 * 120.05957 * 0.50981 * 20 19 18 22 22 C 1.38268 * 120.10927 * 359.76700 * 21 20 19 23 23 C 1.38145 * 120.05391 * 359.97438 * 22 21 20 24 24 C 1.46848 * 111.00113 * 58.15764 * 11 10 9 25 25 H 0.96998 * 120.00302 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47285 * 59.99588 * 9 7 2 27 27 H 1.09009 * 109.46586 * 299.99643 * 9 7 2 28 28 H 1.08996 * 109.47420 * 59.99035 * 10 9 7 29 29 H 1.08999 * 109.46663 * 299.99133 * 10 9 7 30 30 H 1.09000 * 109.46270 * 65.83131 * 12 11 10 31 31 H 1.08995 * 109.45976 * 305.84960 * 12 11 10 32 32 H 1.08993 * 109.50490 * 180.88100 * 13 12 11 33 33 H 1.08999 * 109.53360 * 60.77784 * 13 12 11 34 34 H 1.09000 * 109.52183 * 297.74513 * 14 13 12 35 35 H 1.09004 * 109.51434 * 177.56017 * 14 13 12 36 36 H 1.07997 * 120.03364 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.96603 * 180.23209 * 20 19 18 38 38 H 1.07999 * 119.94336 * 179.74051 * 21 20 19 39 39 H 1.07996 * 119.96848 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.02315 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46023 * 54.14699 * 24 11 10 42 42 H 1.08995 * 109.46078 * 294.17741 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 0.7663 -5.1113 1.2533 13 6 0.1339 -6.5048 1.2800 14 6 -0.8056 -6.6565 0.0804 15 6 -0.0157 -6.4197 -1.2097 16 1 0.7652 -7.1744 -1.3021 17 8 -0.8973 -6.5043 -2.3312 18 6 -1.1436 -7.7443 -2.8301 19 6 -0.6348 -8.8646 -2.1894 20 6 -0.8912 -10.1242 -2.6956 21 6 -1.6452 -10.2682 -3.8456 22 6 -2.1486 -9.1528 -4.4892 23 6 -1.8995 -7.8913 -3.9840 24 6 0.6209 -5.0287 -1.1642 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8898 28 1 2.8721 -3.6042 0.8893 29 1 2.8719 -3.6043 -0.8906 30 1 -0.0166 -4.3559 1.3204 31 1 1.4468 -5.0052 2.0981 32 1 -0.4316 -6.6301 2.2033 33 1 0.9168 -7.2613 1.2271 34 1 -1.6110 -5.9258 0.1538 35 1 -1.2249 -7.6626 0.0713 36 1 -0.0421 -8.7525 -1.2936 37 1 -0.4985 -10.9970 -2.1950 38 1 -1.8410 -11.2536 -4.2420 39 1 -2.7376 -9.2679 -5.3870 40 1 -2.2932 -7.0204 -4.4869 41 1 1.1959 -4.8625 -2.0752 42 1 -0.1612 -4.2737 -1.0857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364223248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = -20.447891 kcal Electronic energy + Delta-G solvation = -21144.282332 eV Core-core repulsion = 18088.921876 eV Total energy + Delta-G solvation = -3055.360456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42123 -38.63824 -37.03723 -33.95313 -32.41017 -31.13965 -30.55214 -29.21146 -28.87415 -25.22147 -23.64555 -23.13155 -22.44835 -21.74355 -20.78523 -19.08136 -18.16092 -16.68756 -16.13785 -15.81767 -15.34461 -14.85686 -14.77726 -14.55250 -14.38714 -13.77904 -13.58710 -13.40143 -13.15321 -12.94955 -12.54339 -12.24365 -12.14063 -11.68916 -11.59483 -11.33193 -11.26085 -10.90581 -10.85335 -10.73762 -10.52108 -10.42358 -10.09218 -9.89757 -9.74370 -9.17818 -9.08973 -8.37438 -8.20941 -7.60646 -6.03503 -4.06847 1.24651 1.38312 3.15173 3.31276 3.35844 3.38163 3.71695 4.41756 4.58156 4.71654 4.80569 4.86009 4.92054 5.03613 5.10184 5.25870 5.30471 5.32014 5.38192 5.48451 5.61278 5.70810 5.85178 5.92356 5.94795 6.02616 6.06246 6.19965 6.27145 6.28778 6.33438 6.38568 6.42503 6.45074 6.63397 6.72418 6.85789 7.40465 7.45117 7.54742 7.63861 7.79102 7.96154 8.38163 8.99847 9.57539 11.07518 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.003550 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.665517 B = 7885.750973 C = 8442.990791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.056 0.944 9 C -0.010 4.010 10 C 0.059 3.941 11 N -0.537 5.537 12 C 0.048 3.952 13 C -0.111 4.111 14 C -0.145 4.145 15 C 0.091 3.909 16 H 0.078 0.922 17 O -0.308 6.308 18 C 0.141 3.859 19 C -0.211 4.211 20 C -0.082 4.082 21 C -0.167 4.167 22 C -0.083 4.083 23 C -0.157 4.157 24 C 0.060 3.940 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.017 0.983 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 -19.653 -3.618 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.048 4.048 10 C -0.068 4.068 11 N -0.262 5.262 12 C -0.081 4.081 13 C -0.149 4.149 14 C -0.183 4.183 15 C 0.035 3.965 16 H 0.096 0.904 17 O -0.221 6.221 18 C 0.095 3.905 19 C -0.230 4.230 20 C -0.100 4.100 21 C -0.186 4.186 22 C -0.101 4.101 23 C -0.176 4.176 24 C -0.068 4.068 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.097 0.903 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.936 -19.718 -3.709 20.277 hybrid contribution -0.111 1.546 0.202 1.563 sum -3.047 -18.172 -3.506 18.756 Atomic orbital electron populations 1.69951 1.06090 1.26782 1.50511 1.25023 0.94843 0.99313 0.95181 0.86642 0.79574 0.83050 0.78654 1.20181 1.21300 1.20221 1.21107 0.92989 0.90898 1.51034 0.92609 1.19676 0.94973 0.92751 0.97421 1.22338 0.96764 0.86296 1.01354 1.62235 1.26703 1.36226 1.01066 1.22116 0.97377 0.95709 0.92850 1.21539 0.98261 0.98053 0.97070 1.22159 0.99215 1.02237 0.94649 1.22488 0.90688 0.99833 0.83528 0.90366 1.86115 1.63350 1.25605 1.47002 1.19099 0.94434 0.84231 0.92783 1.21388 1.05825 0.92637 1.03123 1.20943 0.96897 0.96543 0.95592 1.21016 1.01589 0.98634 0.97315 1.20943 0.98328 0.91641 0.99155 1.20505 1.02722 0.98379 0.95999 1.21900 0.96308 0.93451 0.95174 0.92913 0.96224 0.96471 0.91637 0.91745 0.93589 0.90741 0.91270 0.91409 0.90862 0.91651 0.85099 0.86040 0.86223 0.85616 0.85226 0.90283 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C -0.01 -0.26 4.27 -27.88 -0.12 -0.38 16 10 C 0.06 1.22 5.30 -3.82 -0.02 1.20 16 11 N -0.54 -9.52 4.86 -234.67 -1.14 -10.66 16 12 C 0.05 0.77 5.05 -3.83 -0.02 0.75 16 13 C -0.11 -1.43 6.09 -26.64 -0.16 -1.60 16 14 C -0.14 -1.95 5.28 -26.61 -0.14 -2.09 16 15 C 0.09 1.34 2.27 -26.65 -0.06 1.28 16 16 H 0.08 1.09 6.32 -51.93 -0.33 0.76 16 17 O -0.31 -4.80 9.80 -19.44 -0.19 -4.99 16 18 C 0.14 1.92 6.60 -39.22 -0.26 1.66 16 19 C -0.21 -2.52 8.27 -39.43 -0.33 -2.85 16 20 C -0.08 -0.83 10.04 -39.60 -0.40 -1.23 16 21 C -0.17 -1.61 10.04 -39.56 -0.40 -2.01 16 22 C -0.08 -0.83 10.04 -39.60 -0.40 -1.23 16 23 C -0.16 -1.92 9.99 -39.43 -0.39 -2.32 16 24 C 0.06 1.05 4.49 -3.83 -0.02 1.04 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.53 6.51 -51.93 -0.34 0.20 16 27 H 0.02 0.46 6.68 -51.92 -0.35 0.12 16 28 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.05 0.85 6.75 -51.93 -0.35 0.50 16 31 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.78 6.89 -51.93 -0.36 0.42 16 36 H 0.13 1.46 5.40 -52.49 -0.28 1.18 16 37 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 42 H 0.06 1.15 6.61 -51.93 -0.34 0.81 16 LS Contribution 331.36 15.07 4.99 4.99 Total: -1.00 -30.24 331.36 -10.27 -40.51 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.53 Total: 0.82 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -3.12 Total: -21.15 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.40 Total: -36.81 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.19 Total: -4.99 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.24 -10.27 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364223248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.062 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds