Wall clock time and date at job start Mon Mar 30 2020 01:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48496 * 109.47483 * 240.00571 * 3 2 1 5 5 H 1.48497 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47088 * 120.00205 * 3 2 1 7 7 C 1.37872 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46893 * 179.97438 * 10 9 7 12 12 C 1.46841 * 110.99627 * 293.94757 * 11 10 9 13 13 C 1.53045 * 109.52206 * 185.84174 * 12 11 10 14 14 C 1.53124 * 109.27423 * 300.82237 * 13 12 11 15 15 C 1.53112 * 109.16174 * 57.65631 * 14 13 12 16 16 H 1.08996 * 109.50602 * 62.28199 * 15 14 13 17 17 O 1.42902 * 109.50384 * 182.40435 * 15 14 13 18 18 C 1.35905 * 116.99659 * 275.25317 * 17 15 14 19 19 C 1.38730 * 120.05430 * 5.08568 * 18 17 15 20 20 C 1.38150 * 119.93754 * 179.74038 * 19 18 17 21 21 C 1.38266 * 120.05957 * 0.50981 * 20 19 18 22 22 C 1.38268 * 120.10927 * 359.76700 * 21 20 19 23 23 C 1.38145 * 120.05391 * 359.97438 * 22 21 20 24 24 C 1.46848 * 111.00113 * 58.15764 * 11 10 9 25 25 H 0.96998 * 120.00302 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47285 * 59.99588 * 9 7 2 27 27 H 1.09009 * 109.46586 * 299.99643 * 9 7 2 28 28 H 1.08996 * 109.47420 * 59.99035 * 10 9 7 29 29 H 1.08999 * 109.46663 * 299.99133 * 10 9 7 30 30 H 1.09000 * 109.46270 * 65.83131 * 12 11 10 31 31 H 1.08995 * 109.45976 * 305.84960 * 12 11 10 32 32 H 1.08993 * 109.50490 * 180.88100 * 13 12 11 33 33 H 1.08999 * 109.53360 * 60.77784 * 13 12 11 34 34 H 1.09000 * 109.52183 * 297.74513 * 14 13 12 35 35 H 1.09004 * 109.51434 * 177.56017 * 14 13 12 36 36 H 1.07997 * 120.03364 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.96603 * 180.23209 * 20 19 18 38 38 H 1.07999 * 119.94336 * 179.74051 * 21 20 19 39 39 H 1.07996 * 119.96848 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.02315 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46023 * 54.14699 * 24 11 10 42 42 H 1.08995 * 109.46078 * 294.17741 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 0.7663 -5.1113 1.2533 13 6 0.1339 -6.5048 1.2800 14 6 -0.8056 -6.6565 0.0804 15 6 -0.0157 -6.4197 -1.2097 16 1 0.7652 -7.1744 -1.3021 17 8 -0.8973 -6.5043 -2.3312 18 6 -1.1436 -7.7443 -2.8301 19 6 -0.6348 -8.8646 -2.1894 20 6 -0.8912 -10.1242 -2.6956 21 6 -1.6452 -10.2682 -3.8456 22 6 -2.1486 -9.1528 -4.4892 23 6 -1.8995 -7.8913 -3.9840 24 6 0.6209 -5.0287 -1.1642 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6248 -2.5571 0.8898 28 1 2.8721 -3.6042 0.8893 29 1 2.8719 -3.6043 -0.8906 30 1 -0.0166 -4.3559 1.3204 31 1 1.4468 -5.0052 2.0981 32 1 -0.4316 -6.6301 2.2033 33 1 0.9168 -7.2613 1.2271 34 1 -1.6110 -5.9258 0.1538 35 1 -1.2249 -7.6626 0.0713 36 1 -0.0421 -8.7525 -1.2936 37 1 -0.4985 -10.9970 -2.1950 38 1 -1.8410 -11.2536 -4.2420 39 1 -2.7376 -9.2679 -5.3870 40 1 -2.2932 -7.0204 -4.4869 41 1 1.1959 -4.8625 -2.0752 42 1 -0.1612 -4.2737 -1.0857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364223248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:26 Heat of formation + Delta-G solvation = -38.213786 kcal Electronic energy + Delta-G solvation = -21145.052719 eV Core-core repulsion = 18088.921876 eV Total energy + Delta-G solvation = -3056.130843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48938 -39.85056 -38.13895 -35.67323 -34.21071 -32.06155 -31.61170 -30.79586 -30.16745 -26.99343 -24.84955 -24.73609 -23.37499 -22.95223 -22.15787 -20.46674 -19.19059 -18.64075 -17.39765 -16.76624 -16.65375 -16.45006 -16.05886 -15.94879 -15.43149 -15.30632 -14.90330 -14.55057 -14.27930 -14.20245 -14.04726 -13.79142 -13.56439 -13.16673 -12.84925 -12.70583 -12.59237 -12.46848 -12.38434 -12.04974 -11.91688 -11.64699 -11.60504 -11.55155 -11.38194 -11.16298 -10.57608 -9.91617 -9.24720 -9.12772 -8.23495 -6.36218 0.42279 0.52201 1.37502 1.40786 1.48660 2.04466 2.37839 2.87961 3.09097 3.17511 3.62122 3.70569 3.91256 3.96314 4.00806 4.11787 4.17551 4.32463 4.43798 4.47036 4.47977 4.54683 4.61665 4.64653 4.80230 4.83115 4.83425 4.90135 4.98106 4.99211 5.05520 5.12098 5.30689 5.42795 5.44470 5.51454 5.52652 5.62808 5.69710 5.90261 5.95183 6.12841 6.27138 6.51120 6.81334 7.33507 8.87496 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028780 B = 0.003550 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.665517 B = 7885.750973 C = 8442.990791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.001 3.999 10 C 0.072 3.928 11 N -0.523 5.523 12 C 0.044 3.956 13 C -0.101 4.101 14 C -0.140 4.140 15 C 0.101 3.899 16 H 0.094 0.906 17 O -0.334 6.334 18 C 0.108 3.892 19 C -0.218 4.218 20 C -0.083 4.083 21 C -0.163 4.163 22 C -0.083 4.083 23 C -0.177 4.177 24 C 0.062 3.938 25 H 0.263 0.737 26 H -0.012 1.012 27 H -0.009 1.009 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.012 0.988 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -21.999 -3.511 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.037 4.037 10 C -0.056 4.056 11 N -0.247 5.247 12 C -0.084 4.084 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.045 3.955 16 H 0.112 0.888 17 O -0.248 6.248 18 C 0.063 3.937 19 C -0.237 4.237 20 C -0.101 4.101 21 C -0.181 4.181 22 C -0.101 4.101 23 C -0.196 4.196 24 C -0.066 4.066 25 H 0.072 0.928 26 H 0.006 0.994 27 H 0.009 0.991 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.030 0.970 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.155 0.845 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.169 0.831 40 H 0.143 0.857 41 H 0.089 0.911 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.900 -22.091 -3.602 22.463 hybrid contribution -0.500 2.198 0.100 2.256 sum -2.400 -19.893 -3.502 20.341 Atomic orbital electron populations 1.70107 1.07966 1.27835 1.51530 1.26019 0.95734 1.03558 0.94588 0.85470 0.78227 0.77857 0.79331 1.19103 1.21024 1.18871 1.21599 0.93693 0.92118 1.50768 0.91706 1.19521 0.95160 0.94426 0.94633 1.22119 0.95809 0.85793 1.01868 1.62299 1.26792 1.33780 1.01852 1.22243 0.96650 0.97251 0.92269 1.21518 0.98674 0.95874 0.97749 1.22128 0.98618 1.02802 0.94200 1.22319 0.91249 0.97676 0.84283 0.88845 1.86064 1.63828 1.27457 1.47481 1.19409 0.96323 0.83961 0.93995 1.21532 1.05914 0.92822 1.03385 1.21332 0.96374 0.96665 0.95724 1.21450 1.00164 0.99775 0.96699 1.21290 0.98068 0.90839 0.99858 1.20721 1.03285 0.99498 0.96115 1.21838 0.95125 0.94812 0.94836 0.92840 0.99361 0.99067 0.90608 0.91534 0.96967 0.89682 0.88982 0.89250 0.93067 0.89340 0.84475 0.83225 0.83175 0.83052 0.85747 0.91102 0.96381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.17 13.29 21.44 0.28 -57.88 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.00 0.05 4.27 29.85 0.13 0.18 16 10 C 0.07 3.02 5.30 86.30 0.46 3.47 16 11 N -0.52 -18.88 4.86 -896.37 -4.35 -23.24 16 12 C 0.04 1.44 5.05 86.33 0.44 1.87 16 13 C -0.10 -2.43 6.09 30.65 0.19 -2.24 16 14 C -0.14 -3.70 5.28 30.67 0.16 -3.54 16 15 C 0.10 3.02 2.27 30.64 0.07 3.09 16 16 H 0.09 2.50 6.32 -2.39 -0.02 2.49 16 17 O -0.33 -10.88 9.80 -92.49 -0.91 -11.79 16 18 C 0.11 2.95 6.60 22.51 0.15 3.10 16 19 C -0.22 -4.83 8.27 22.37 0.18 -4.65 16 20 C -0.08 -1.43 10.04 22.26 0.22 -1.21 16 21 C -0.16 -2.59 10.04 22.28 0.22 -2.37 16 22 C -0.08 -1.51 10.04 22.25 0.22 -1.28 16 23 C -0.18 -4.33 9.99 22.37 0.22 -4.11 16 24 C 0.06 2.33 4.49 86.33 0.39 2.71 16 25 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 26 H -0.01 -0.71 6.51 -2.39 -0.02 -0.72 16 27 H -0.01 -0.52 6.68 -2.38 -0.02 -0.54 16 28 H 0.08 3.04 8.06 -2.39 -0.02 3.02 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.01 0.48 6.75 -2.39 -0.02 0.46 16 31 H 0.08 2.59 8.06 -2.39 -0.02 2.58 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.96 6.89 -2.38 -0.02 1.94 16 36 H 0.14 2.76 5.40 -2.91 -0.02 2.74 16 37 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.07 2.68 8.12 -2.39 -0.02 2.66 16 42 H 0.02 0.80 6.61 -2.39 -0.02 0.79 16 Total: -1.00 -68.27 331.36 1.79 -66.49 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.99 Total: 15.20 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 3.75 Total: -35.58 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -4.07 Total: -81.12 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.91 Total: -11.79 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.27 1.79 -66.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364223248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.271 kcal (2) G-P(sol) polarization free energy of solvation -68.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds