Wall clock time and date at job start Mon Mar 30 2020 01:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00198 * 2 1 4 4 H 1.48498 * 109.47092 * 240.00121 * 3 2 1 5 5 H 1.48504 * 109.46857 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47510 * 119.99490 * 3 2 1 7 7 C 1.37877 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00502 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99539 * 359.72606 * 7 2 1 10 10 N 1.46902 * 109.47207 * 180.27292 * 9 7 2 11 11 C 1.46853 * 110.99706 * 64.69772 * 10 9 7 12 12 C 1.53038 * 109.52346 * 185.84032 * 11 10 9 13 13 C 1.53124 * 109.27641 * 300.82239 * 12 11 10 14 14 C 1.53119 * 109.16014 * 57.65279 * 13 12 11 15 15 C 1.46842 * 111.00366 * 188.90607 * 10 9 7 16 16 H 1.09004 * 109.46516 * 294.18185 * 15 10 9 17 17 C 1.53002 * 109.45798 * 54.14666 * 15 10 9 18 18 H 1.08995 * 109.47300 * 301.86343 * 17 15 10 19 19 O 1.42898 * 109.47497 * 61.87042 * 17 15 10 20 20 C 1.50705 * 109.46818 * 181.86876 * 17 15 10 21 21 C 1.38241 * 119.99891 * 279.72599 * 20 17 15 22 22 C 1.38232 * 120.00108 * 179.79000 * 21 20 17 23 23 C 1.38236 * 119.99956 * 0.46464 * 22 21 20 24 24 C 1.38243 * 119.99944 * 359.76593 * 23 22 21 25 25 C 1.38234 * 120.00224 * 100.00090 * 20 17 15 26 26 H 0.96994 * 120.00053 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47398 * 300.27403 * 9 7 2 28 28 H 1.09002 * 109.46964 * 60.27782 * 9 7 2 29 29 H 1.08999 * 109.46539 * 305.85423 * 11 10 9 30 30 H 1.08997 * 109.46217 * 65.82238 * 11 10 9 31 31 H 1.09000 * 109.50185 * 60.76042 * 12 11 10 32 32 H 1.08997 * 109.50248 * 180.84197 * 12 11 10 33 33 H 1.08997 * 109.52132 * 177.56054 * 13 12 11 34 34 H 1.09000 * 109.52332 * 297.74758 * 13 12 11 35 35 H 1.09003 * 109.50070 * 62.28693 * 14 13 12 36 36 H 1.09004 * 109.50136 * 182.39975 * 14 13 12 37 37 H 0.96698 * 113.99995 * 59.99087 * 19 17 15 38 38 H 1.08003 * 119.99903 * 359.97438 * 21 20 17 39 39 H 1.07996 * 120.00017 * 180.25409 * 22 21 20 40 40 H 1.07998 * 119.99867 * 179.79392 * 23 22 21 41 41 H 1.07994 * 119.99782 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.00057 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0074 10 7 2.2057 -3.6157 0.0132 11 6 2.9930 -3.6284 1.2527 12 6 4.0715 -4.7104 1.1625 13 6 3.4050 -6.0717 0.9451 14 6 2.5527 -6.0167 -0.3258 15 6 1.5183 -4.8969 -0.1924 16 1 0.8692 -5.1016 0.6591 17 6 0.6772 -4.8251 -1.4685 18 1 -0.0382 -4.0069 -1.3866 19 8 1.5326 -4.5995 -2.5907 20 6 -0.0642 -6.1238 -1.6551 21 6 0.5853 -7.2195 -2.1924 22 6 -0.0936 -8.4120 -2.3596 23 6 -1.4246 -8.5061 -1.9984 24 6 -2.0754 -7.4090 -1.4655 25 6 -1.3953 -6.2178 -1.2943 26 1 -0.4850 0.8400 -0.0004 27 1 0.6244 -2.5522 0.8976 28 1 0.6245 -2.5615 -0.8824 29 1 3.4650 -2.6560 1.3932 30 1 2.3371 -3.8390 2.0974 31 1 4.7361 -4.4929 0.3263 32 1 4.6461 -4.7296 2.0885 33 1 4.1712 -6.8393 0.8369 34 1 2.7703 -6.3071 1.7994 35 1 3.1934 -5.8198 -1.1854 36 1 2.0418 -6.9698 -0.4628 37 1 2.1961 -5.2900 -2.7247 38 1 1.6240 -7.1446 -2.4788 39 1 0.4150 -9.2691 -2.7755 40 1 -1.9558 -9.4368 -2.1321 41 1 -3.1152 -7.4827 -1.1830 42 1 -1.9039 -5.3607 -0.8783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368996446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:06 Heat of formation + Delta-G solvation = -25.758369 kcal Electronic energy + Delta-G solvation = -22072.317288 eV Core-core repulsion = 19016.726552 eV Total energy + Delta-G solvation = -3055.590735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02213 -38.23890 -35.91435 -33.62483 -31.95236 -31.67928 -30.87075 -29.83179 -27.00214 -25.77272 -23.87421 -22.48847 -22.14071 -21.14093 -20.36714 -18.99120 -17.42710 -16.36639 -15.91592 -15.41646 -15.32252 -14.89329 -14.31922 -14.15818 -13.90757 -13.73702 -13.50257 -13.29817 -12.92893 -12.48181 -12.37159 -12.17673 -11.79438 -11.59521 -11.32897 -11.06946 -10.93907 -10.81029 -10.73796 -10.68560 -10.44639 -10.17394 -9.99849 -9.57798 -9.36637 -9.09453 -8.83859 -8.57452 -8.34945 -7.15365 -5.97884 -3.97707 1.38776 1.44123 3.36976 3.40803 3.44119 3.80639 4.45195 4.64732 4.87064 4.93263 4.99696 5.05139 5.13737 5.16911 5.23376 5.35898 5.40143 5.53064 5.57439 5.63059 5.75571 5.84400 5.96875 6.01803 6.03660 6.10078 6.21920 6.27209 6.31967 6.36654 6.47162 6.50259 6.53424 6.73940 6.77082 6.82416 7.03602 7.35707 7.38846 7.84385 8.07006 8.16957 8.27446 8.61717 9.08593 9.65550 11.13329 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019850 B = 0.005445 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.212126 B = 5141.339419 C = 6043.868996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.189 3.811 10 N -0.520 5.520 11 C 0.064 3.936 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.119 4.119 15 C 0.062 3.938 16 H 0.035 0.965 17 C 0.149 3.851 18 H 0.117 0.883 19 O -0.532 6.532 20 C -0.102 4.102 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.109 4.109 26 H 0.261 0.739 27 H -0.014 1.014 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.016 0.984 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.361 0.639 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 -16.997 -1.358 17.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.064 3.936 10 N -0.245 5.245 11 C -0.064 4.064 12 C -0.156 4.156 13 C -0.153 4.153 14 C -0.157 4.157 15 C -0.047 4.047 16 H 0.052 0.948 17 C 0.089 3.911 18 H 0.135 0.865 19 O -0.336 6.336 20 C -0.103 4.103 21 C -0.129 4.129 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.127 4.127 26 H 0.070 0.930 27 H 0.004 0.996 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.208 0.792 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.664 -16.247 -1.802 16.360 hybrid contribution 0.032 0.286 0.852 0.899 sum 0.695 -15.961 -0.950 16.004 Atomic orbital electron populations 1.69937 1.06027 1.26776 1.51268 1.24962 0.94845 0.99202 0.95559 0.86581 0.79452 0.82893 0.78591 1.20166 1.21427 1.20386 1.21090 0.93393 0.89896 1.49687 0.91993 1.19815 0.90384 0.87395 0.95982 1.61992 1.26605 1.01387 1.34505 1.21958 0.94806 0.99159 0.90475 1.21640 0.98287 0.94560 1.01094 1.21515 0.98629 0.97513 0.97615 1.21773 0.97680 0.97597 0.98630 1.22076 0.94351 0.92143 0.96166 0.94756 1.21058 0.91097 0.93168 0.85751 0.86516 1.86730 1.48373 1.50593 1.47934 1.20793 0.94847 0.96656 0.98009 1.20948 0.99774 0.92692 0.99525 1.21073 0.94800 0.97596 1.00574 1.21101 0.94986 0.98501 1.00012 1.21126 0.99815 0.93155 0.99688 1.21109 0.93969 0.98136 0.99531 0.92961 0.99642 0.94260 0.89726 0.96582 0.91441 0.92588 0.92596 0.92794 0.91380 0.91749 0.79233 0.86124 0.86292 0.86441 0.86189 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.50 -14.21 8.42 -34.44 -0.29 -14.50 16 8 H 0.06 1.74 7.04 -52.49 -0.37 1.37 16 9 C 0.19 4.92 4.42 -4.97 -0.02 4.90 16 10 N -0.52 -11.12 4.39 -228.12 -1.00 -12.12 16 11 C 0.06 1.26 5.29 -3.83 -0.02 1.24 16 12 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 13 C -0.12 -1.58 6.00 -26.61 -0.16 -1.74 16 14 C -0.12 -1.70 4.02 -26.65 -0.11 -1.81 16 15 C 0.06 1.11 1.72 -67.73 -0.12 0.99 16 16 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 17 C 0.15 2.62 2.63 -27.88 -0.07 2.55 16 18 H 0.12 2.40 5.89 -51.93 -0.31 2.10 16 19 O -0.53 -9.70 13.02 -35.23 -0.46 -10.15 16 20 C -0.10 -1.51 4.75 -104.62 -0.50 -2.01 16 21 C -0.11 -1.40 7.18 -39.58 -0.28 -1.68 16 22 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 23 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 24 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 25 C -0.11 -1.54 9.67 -39.58 -0.38 -1.92 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 27 H -0.01 -0.40 8.13 -51.93 -0.42 -0.82 16 28 H 0.04 1.09 5.67 -51.93 -0.29 0.80 16 29 H 0.08 1.81 6.62 -51.93 -0.34 1.47 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.95 6.71 -51.93 -0.35 0.60 16 36 H 0.06 0.83 5.68 -51.93 -0.29 0.53 16 37 H 0.36 5.18 5.71 45.56 0.26 5.44 16 38 H 0.12 1.31 5.95 -52.48 -0.31 1.00 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.12 1.73 8.04 -52.49 -0.42 1.31 16 LS Contribution 324.16 15.07 4.88 4.88 Total: -1.00 -31.16 324.16 -10.06 -41.22 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.79 Total: 5.29 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -3.41 Total: -19.86 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.27 Total: -38.31 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.46 Total: -10.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.16 -10.06 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368996446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.466 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds