Wall clock time and date at job start Mon Mar 30 2020 01:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99889 * 2 1 4 4 H 1.48500 * 109.47500 * 270.00375 * 3 2 1 5 5 H 1.48502 * 109.46949 * 30.00927 * 3 2 1 6 6 H 1.48502 * 109.47090 * 149.99950 * 3 2 1 7 7 C 1.37878 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99554 * 185.16962 * 7 2 1 9 9 C 1.50698 * 120.00147 * 5.16890 * 7 2 1 10 10 N 1.46902 * 109.47069 * 174.56648 * 9 7 2 11 11 C 1.46845 * 111.00077 * 294.85208 * 10 9 7 12 12 C 1.53033 * 109.52326 * 174.16203 * 11 10 9 13 13 C 1.53122 * 109.27943 * 59.17543 * 12 11 10 14 14 C 1.53117 * 109.15914 * 302.34626 * 13 12 11 15 15 C 1.46850 * 110.99715 * 170.63820 * 10 9 7 16 16 H 1.09001 * 109.45024 * 65.83313 * 15 10 9 17 17 C 1.53001 * 109.46208 * 305.85618 * 15 10 9 18 18 H 1.08997 * 109.47195 * 60.70413 * 17 15 10 19 19 O 1.42899 * 109.46818 * 180.70202 * 17 15 10 20 20 C 1.50697 * 109.47161 * 300.70081 * 17 15 10 21 21 C 1.38238 * 119.99743 * 95.54891 * 20 17 15 22 22 C 1.38241 * 119.99861 * 180.02562 * 21 20 17 23 23 C 1.38233 * 119.99861 * 359.97438 * 22 21 20 24 24 C 1.38237 * 120.00332 * 0.25925 * 23 22 21 25 25 C 1.38233 * 120.00345 * 275.56888 * 20 17 15 26 26 H 0.96995 * 120.00218 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46769 * 54.57285 * 9 7 2 28 28 H 1.09001 * 109.47302 * 294.56882 * 9 7 2 29 29 H 1.08997 * 109.46463 * 54.14634 * 11 10 9 30 30 H 1.09004 * 109.45047 * 294.17002 * 11 10 9 31 31 H 1.09003 * 109.50340 * 299.23797 * 12 11 10 32 32 H 1.09004 * 109.53693 * 179.13403 * 12 11 10 33 33 H 1.09003 * 109.52034 * 182.44207 * 13 12 11 34 34 H 1.08993 * 109.57512 * 62.28657 * 13 12 11 35 35 H 1.09002 * 109.50416 * 297.71127 * 14 13 12 36 36 H 1.09003 * 109.53546 * 177.61412 * 14 13 12 37 37 H 0.96708 * 114.00118 * 60.00312 * 19 17 15 38 38 H 1.07998 * 120.00093 * 359.97438 * 21 20 17 39 39 H 1.08004 * 119.99662 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99690 * 179.97438 * 23 22 21 41 41 H 1.07991 * 120.00192 * 179.71968 * 24 23 22 42 42 H 1.08005 * 119.99911 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0813 -1.1959 0.0837 9 6 1.2557 -2.4965 -0.1187 10 7 2.2143 -3.6045 -0.2259 11 6 2.9891 -3.5115 -1.4698 12 6 4.0723 -4.5925 -1.4796 13 6 3.4130 -5.9700 -1.3686 14 6 2.5734 -6.0237 -0.0893 15 6 1.5335 -4.9013 -0.1198 16 1 0.8769 -5.0379 -0.9791 17 6 0.7052 -4.9386 1.1660 18 1 -0.0443 -4.1476 1.1385 19 8 0.0557 -6.2065 1.2775 20 6 1.6105 -4.7318 2.3529 21 6 1.7646 -3.4685 2.8928 22 6 2.5954 -3.2787 3.9812 23 6 3.2717 -4.3522 4.5300 24 6 3.1213 -5.6146 3.9871 25 6 2.2871 -5.8051 2.9015 26 1 -0.4850 0.8400 0.0004 27 1 0.6257 -2.4739 -1.0079 28 1 0.6329 -2.6389 0.7645 29 1 3.4561 -2.5288 -1.5343 30 1 2.3253 -3.6549 -2.3225 31 1 4.7445 -4.4417 -0.6348 32 1 4.6377 -4.5335 -2.4097 33 1 4.1831 -6.7405 -1.3315 34 1 2.7708 -6.1382 -2.2331 35 1 3.2220 -5.8954 0.7773 36 1 2.0673 -6.9870 -0.0256 37 1 0.6632 -6.9584 1.3076 38 1 1.2365 -2.6298 2.4637 39 1 2.7161 -2.2917 4.4027 40 1 3.9211 -4.2038 5.3801 41 1 3.6532 -6.4524 4.4131 42 1 2.1666 -6.7921 2.4797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368996447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:09 Heat of formation + Delta-G solvation = -26.107479 kcal Electronic energy + Delta-G solvation = -22638.275648 eV Core-core repulsion = 19582.669774 eV Total energy + Delta-G solvation = -3055.605874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.95548 -37.89171 -36.16164 -33.74676 -32.10622 -31.36094 -30.39681 -29.70849 -27.10434 -25.62022 -23.90762 -22.14379 -21.83912 -21.26146 -20.41449 -18.89423 -17.32444 -16.42264 -15.89489 -15.27848 -15.19499 -14.54369 -14.27769 -14.05146 -13.95725 -13.62385 -13.43118 -12.83590 -12.79309 -12.51672 -12.42183 -12.12122 -11.89651 -11.54796 -11.28041 -10.94773 -10.88938 -10.79219 -10.74682 -10.53330 -10.40072 -10.06797 -10.03274 -9.62757 -9.42579 -9.18482 -8.43449 -8.38795 -8.15398 -7.22683 -6.06708 -4.07080 1.81483 1.92471 3.29006 3.36173 3.39522 4.23755 4.38386 4.60080 4.92584 5.05266 5.16039 5.19634 5.26948 5.28762 5.36214 5.39795 5.52577 5.67497 5.73425 5.85748 5.93440 6.01186 6.05524 6.16330 6.19323 6.24621 6.29803 6.36735 6.43920 6.53830 6.61016 6.76006 6.77277 6.86370 7.01975 7.16524 7.26817 7.32960 7.50645 7.77578 7.85126 8.05146 8.17495 8.53375 9.01637 9.57303 11.03795 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.007569 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.464879 B = 3698.559631 C = 4530.638521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.185 3.815 10 N -0.521 5.521 11 C 0.067 3.933 12 C -0.117 4.117 13 C -0.115 4.115 14 C -0.120 4.120 15 C 0.061 3.939 16 H 0.038 0.962 17 C 0.145 3.855 18 H 0.117 0.883 19 O -0.558 6.558 20 C -0.085 4.085 21 C -0.075 4.075 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.119 4.119 26 H 0.261 0.739 27 H -0.010 1.010 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.365 0.635 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 -11.807 3.161 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.060 3.940 10 N -0.247 5.247 11 C -0.062 4.062 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.158 4.158 15 C -0.048 4.048 16 H 0.056 0.944 17 C 0.086 3.914 18 H 0.134 0.866 19 O -0.363 6.363 20 C -0.085 4.085 21 C -0.093 4.093 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.008 0.992 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.213 0.787 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.322 -11.278 3.553 12.967 hybrid contribution 0.440 0.670 -0.798 1.131 sum 5.762 -10.608 2.755 12.382 Atomic orbital electron populations 1.69957 1.05989 1.26810 1.50786 1.24966 0.94792 0.99172 0.95500 0.86575 0.79902 0.83390 0.78045 1.20813 1.21344 1.19790 1.21105 0.93858 0.89770 1.49557 0.91838 1.19911 0.90288 0.87694 0.96099 1.62021 1.26975 1.00795 1.34915 1.21919 0.94764 0.99210 0.90276 1.21622 0.98303 0.94493 1.01080 1.21502 0.98700 0.97488 0.97546 1.21774 0.98010 0.96764 0.99228 1.22098 0.94306 0.92348 0.96082 0.94379 1.21080 0.93830 0.85603 0.90883 0.86599 1.86638 1.37442 1.15714 1.96544 1.20218 0.97989 0.93959 0.96338 1.21331 0.97090 0.96980 0.93895 1.21132 0.97255 0.98495 0.96829 1.21020 1.00294 0.93202 1.00204 1.20878 0.99864 0.96935 0.97311 1.20707 0.97957 0.97904 0.97151 0.92902 0.99179 0.94563 0.89699 0.96452 0.91543 0.92599 0.92654 0.92787 0.90326 0.92764 0.78719 0.84254 0.86461 0.87026 0.87013 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.56 5.45 -17.82 -0.10 1.46 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -13.37 8.30 -34.44 -0.29 -13.65 16 8 H 0.06 1.70 7.30 -52.48 -0.38 1.32 16 9 C 0.18 4.51 3.76 -4.98 -0.02 4.49 16 10 N -0.52 -10.57 3.89 -228.12 -0.89 -11.46 16 11 C 0.07 1.27 5.30 -3.84 -0.02 1.25 16 12 C -0.12 -1.80 6.09 -26.65 -0.16 -1.96 16 13 C -0.11 -1.57 6.00 -26.61 -0.16 -1.73 16 14 C -0.12 -1.72 4.20 -26.65 -0.11 -1.83 16 15 C 0.06 1.08 1.88 -67.72 -0.13 0.95 16 16 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 17 C 0.14 2.55 2.80 -27.88 -0.08 2.47 16 18 H 0.12 2.35 6.08 -51.93 -0.32 2.03 16 19 O -0.56 -8.86 13.09 -35.23 -0.46 -9.32 16 20 C -0.08 -1.45 4.28 -104.63 -0.45 -1.90 16 21 C -0.08 -1.41 8.91 -39.58 -0.35 -1.76 16 22 C -0.12 -1.99 10.05 -39.58 -0.40 -2.38 16 23 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 24 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.12 -1.74 7.23 -39.58 -0.29 -2.03 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H -0.01 -0.26 8.13 -51.93 -0.42 -0.68 16 28 H 0.04 0.92 3.71 -51.93 -0.19 0.72 16 29 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.18 5.82 -51.93 -0.30 0.88 16 36 H 0.05 0.65 6.81 -51.93 -0.35 0.30 16 37 H 0.36 4.45 5.69 45.56 0.26 4.71 16 38 H 0.14 2.99 5.96 -52.49 -0.31 2.67 16 39 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.11 1.32 6.19 -52.48 -0.33 1.00 16 LS Contribution 319.26 15.07 4.81 4.81 Total: -1.00 -28.68 319.26 -9.80 -38.48 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.64 Total: 7.45 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -3.34 Total: -21.14 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.15 Total: -36.36 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.46 Total: -9.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.68 -9.80 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368996447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.373 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds