Wall clock time and date at job start Mon Mar 30 2020 01:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99889 * 2 1 4 4 H 1.48500 * 109.47500 * 270.00375 * 3 2 1 5 5 H 1.48502 * 109.46949 * 30.00927 * 3 2 1 6 6 H 1.48502 * 109.47090 * 149.99950 * 3 2 1 7 7 C 1.37878 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99554 * 185.16962 * 7 2 1 9 9 C 1.50698 * 120.00147 * 5.16890 * 7 2 1 10 10 N 1.46902 * 109.47069 * 174.56648 * 9 7 2 11 11 C 1.46845 * 111.00077 * 294.85208 * 10 9 7 12 12 C 1.53033 * 109.52326 * 174.16203 * 11 10 9 13 13 C 1.53122 * 109.27943 * 59.17543 * 12 11 10 14 14 C 1.53117 * 109.15914 * 302.34626 * 13 12 11 15 15 C 1.46850 * 110.99715 * 170.63820 * 10 9 7 16 16 H 1.09001 * 109.45024 * 65.83313 * 15 10 9 17 17 C 1.53001 * 109.46208 * 305.85618 * 15 10 9 18 18 H 1.08997 * 109.47195 * 60.70413 * 17 15 10 19 19 O 1.42899 * 109.46818 * 180.70202 * 17 15 10 20 20 C 1.50697 * 109.47161 * 300.70081 * 17 15 10 21 21 C 1.38238 * 119.99743 * 95.54891 * 20 17 15 22 22 C 1.38241 * 119.99861 * 180.02562 * 21 20 17 23 23 C 1.38233 * 119.99861 * 359.97438 * 22 21 20 24 24 C 1.38237 * 120.00332 * 0.25925 * 23 22 21 25 25 C 1.38233 * 120.00345 * 275.56888 * 20 17 15 26 26 H 0.96995 * 120.00218 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46769 * 54.57285 * 9 7 2 28 28 H 1.09001 * 109.47302 * 294.56882 * 9 7 2 29 29 H 1.08997 * 109.46463 * 54.14634 * 11 10 9 30 30 H 1.09004 * 109.45047 * 294.17002 * 11 10 9 31 31 H 1.09003 * 109.50340 * 299.23797 * 12 11 10 32 32 H 1.09004 * 109.53693 * 179.13403 * 12 11 10 33 33 H 1.09003 * 109.52034 * 182.44207 * 13 12 11 34 34 H 1.08993 * 109.57512 * 62.28657 * 13 12 11 35 35 H 1.09002 * 109.50416 * 297.71127 * 14 13 12 36 36 H 1.09003 * 109.53546 * 177.61412 * 14 13 12 37 37 H 0.96708 * 114.00118 * 60.00312 * 19 17 15 38 38 H 1.07998 * 120.00093 * 359.97438 * 21 20 17 39 39 H 1.08004 * 119.99662 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.99690 * 179.97438 * 23 22 21 41 41 H 1.07991 * 120.00192 * 179.71968 * 24 23 22 42 42 H 1.08005 * 119.99911 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0813 -1.1959 0.0837 9 6 1.2557 -2.4965 -0.1187 10 7 2.2143 -3.6045 -0.2259 11 6 2.9891 -3.5115 -1.4698 12 6 4.0723 -4.5925 -1.4796 13 6 3.4130 -5.9700 -1.3686 14 6 2.5734 -6.0237 -0.0893 15 6 1.5335 -4.9013 -0.1198 16 1 0.8769 -5.0379 -0.9791 17 6 0.7052 -4.9386 1.1660 18 1 -0.0443 -4.1476 1.1385 19 8 0.0557 -6.2065 1.2775 20 6 1.6105 -4.7318 2.3529 21 6 1.7646 -3.4685 2.8928 22 6 2.5954 -3.2787 3.9812 23 6 3.2717 -4.3522 4.5300 24 6 3.1213 -5.6146 3.9871 25 6 2.2871 -5.8051 2.9015 26 1 -0.4850 0.8400 0.0004 27 1 0.6257 -2.4739 -1.0079 28 1 0.6329 -2.6389 0.7645 29 1 3.4561 -2.5288 -1.5343 30 1 2.3253 -3.6549 -2.3225 31 1 4.7445 -4.4417 -0.6348 32 1 4.6377 -4.5335 -2.4097 33 1 4.1831 -6.7405 -1.3315 34 1 2.7708 -6.1382 -2.2331 35 1 3.2220 -5.8954 0.7773 36 1 2.0673 -6.9870 -0.0256 37 1 0.6632 -6.9584 1.3076 38 1 1.2365 -2.6298 2.4637 39 1 2.7161 -2.2917 4.4027 40 1 3.9211 -4.2038 5.3801 41 1 3.6532 -6.4524 4.4131 42 1 2.1666 -6.7921 2.4797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368996447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:08 Heat of formation + Delta-G solvation = -44.446259 kcal Electronic energy + Delta-G solvation = -22639.070877 eV Core-core repulsion = 19582.669774 eV Total energy + Delta-G solvation = -3056.401103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31938 -39.22075 -37.51971 -35.49428 -33.84483 -32.76860 -31.62327 -31.00311 -28.98931 -27.00772 -25.60135 -23.48842 -23.10185 -22.92735 -21.72022 -20.29130 -18.62647 -18.45970 -17.32698 -16.71457 -16.63515 -16.22369 -15.66566 -15.49890 -15.19377 -15.10201 -14.80992 -14.23132 -14.14143 -14.01774 -13.93693 -13.72057 -13.28624 -13.16373 -12.71177 -12.65704 -12.55095 -12.24800 -12.14025 -12.01821 -11.78229 -11.68993 -11.48605 -11.18907 -10.94053 -10.80685 -10.53455 -9.61658 -9.42584 -8.96426 -8.20248 -6.27729 0.58971 0.68784 1.38145 1.38254 1.49714 2.38324 2.97888 3.12386 3.13490 3.58957 3.73423 3.85879 3.93542 4.07477 4.16335 4.27560 4.32295 4.39464 4.44519 4.47725 4.65484 4.70019 4.78115 4.90606 4.94541 4.98070 5.01279 5.11683 5.20642 5.22579 5.25340 5.28896 5.32292 5.43110 5.54313 5.66888 5.68951 5.79173 5.89377 6.08634 6.27323 6.36785 6.62294 6.79232 6.88656 7.40925 8.90597 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.007569 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.464879 B = 3698.559631 C = 4530.638521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.203 3.797 10 N -0.518 5.518 11 C 0.062 3.938 12 C -0.108 4.108 13 C -0.112 4.112 14 C -0.113 4.113 15 C 0.060 3.940 16 H 0.019 0.981 17 C 0.154 3.846 18 H 0.071 0.929 19 O -0.560 6.560 20 C -0.097 4.097 21 C -0.107 4.107 22 C -0.136 4.136 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.114 4.114 26 H 0.262 0.738 27 H -0.053 1.053 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.005 0.995 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.385 0.615 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.143 0.857 41 H 0.153 0.847 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.476 -14.620 4.070 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.547 4.547 8 H 0.077 0.923 9 C 0.077 3.923 10 N -0.244 5.244 11 C -0.066 4.066 12 C -0.146 4.146 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.049 4.049 16 H 0.037 0.963 17 C 0.095 3.905 18 H 0.089 0.911 19 O -0.368 6.368 20 C -0.097 4.097 21 C -0.125 4.125 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.132 4.132 26 H 0.071 0.929 27 H -0.035 1.035 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.023 0.977 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.236 0.764 38 H 0.112 0.888 39 H 0.135 0.865 40 H 0.161 0.839 41 H 0.171 0.829 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.122 -14.119 4.458 16.887 hybrid contribution -0.459 1.481 -1.049 1.872 sum 7.663 -12.638 3.408 15.168 Atomic orbital electron populations 1.70091 1.07589 1.27644 1.52003 1.25811 0.95582 1.02790 0.95173 0.85523 0.78747 0.78975 0.78261 1.20121 1.20958 1.18927 1.21325 0.93612 0.90931 1.48874 0.92322 1.19541 0.90250 0.89092 0.93410 1.61975 1.25913 1.00969 1.35555 1.21983 0.95518 0.99863 0.89216 1.21564 0.96800 0.94075 1.02147 1.21524 0.99365 0.96968 0.97076 1.21778 0.97063 0.96345 0.99801 1.22207 0.95253 0.92157 0.95291 0.96317 1.20658 0.92781 0.85418 0.91643 0.91114 1.86609 1.38033 1.15623 1.96523 1.20151 0.98834 0.94268 0.96435 1.21089 0.98880 0.96691 0.95832 1.21250 0.97704 0.99788 0.96651 1.21379 0.99568 0.92751 1.00584 1.21370 0.98747 0.97716 0.96210 1.21051 0.96888 0.98229 0.97041 0.92876 1.03538 0.95892 0.92239 0.97652 0.91810 0.90394 0.89171 0.92663 0.90210 0.89320 0.76433 0.88842 0.86477 0.83939 0.82917 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.29 -56.24 16 2 C 0.00 0.25 5.45 84.65 0.46 0.71 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.51 -28.68 8.30 25.60 0.21 -28.47 16 8 H 0.06 3.29 7.30 -2.91 -0.02 3.27 16 9 C 0.20 10.78 3.76 85.56 0.32 11.10 16 10 N -0.52 -22.09 3.89 -875.65 -3.40 -25.49 16 11 C 0.06 2.45 5.30 86.32 0.46 2.91 16 12 C -0.11 -3.12 6.09 30.65 0.19 -2.93 16 13 C -0.11 -2.67 6.00 30.67 0.18 -2.48 16 14 C -0.11 -2.88 4.20 30.65 0.13 -2.75 16 15 C 0.06 2.16 1.88 44.94 0.08 2.24 16 16 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 17 C 0.15 5.63 2.80 29.85 0.08 5.72 16 18 H 0.07 3.20 6.08 -2.39 -0.01 3.18 16 19 O -0.56 -17.21 13.09 -148.98 -1.95 -19.16 16 20 C -0.10 -3.32 4.28 -19.87 -0.09 -3.41 16 21 C -0.11 -4.23 8.91 22.27 0.20 -4.03 16 22 C -0.14 -4.57 10.05 22.27 0.22 -4.35 16 23 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 24 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 25 C -0.11 -2.97 7.23 22.27 0.16 -2.81 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H -0.05 -3.19 8.13 -2.39 -0.02 -3.21 16 28 H 0.02 1.30 3.71 -2.39 -0.01 1.29 16 29 H 0.06 2.59 6.76 -2.39 -0.02 2.58 16 30 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 2.08 5.82 -2.39 -0.01 2.07 16 36 H 0.09 1.70 6.81 -2.39 -0.02 1.68 16 37 H 0.38 8.05 5.69 -74.05 -0.42 7.63 16 38 H 0.09 4.49 5.96 -2.91 -0.02 4.48 16 39 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 41 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 42 H 0.14 2.69 6.19 -2.91 -0.02 2.67 16 Total: -1.00 -67.80 319.26 0.62 -67.18 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.60 Total: 21.13 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 3.07 Total: -34.22 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -3.12 Total: -81.74 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -1.95 Total: -19.16 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.80 0.62 -67.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368996447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.732 kcal (2) G-P(sol) polarization free energy of solvation -67.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds