Wall clock time and date at job start Mon Mar 30 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00242 * 2 1 4 4 H 1.48506 * 109.47063 * 270.00160 * 3 2 1 5 5 H 1.48502 * 109.47110 * 30.00133 * 3 2 1 6 6 H 1.48497 * 109.47323 * 150.00088 * 3 2 1 7 7 C 1.37879 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99743 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47141 * 178.46482 * 9 7 2 11 11 C 1.46853 * 111.00313 * 299.90799 * 10 9 7 12 12 C 1.53036 * 109.52420 * 185.83360 * 11 10 9 13 13 C 1.53116 * 109.28229 * 300.82199 * 12 11 10 14 14 C 1.53118 * 109.15349 * 57.65850 * 13 12 11 15 15 C 1.46851 * 110.99762 * 64.11096 * 10 9 7 16 16 H 1.08995 * 109.46599 * 294.16915 * 15 10 9 17 17 C 1.53007 * 109.45672 * 54.14816 * 15 10 9 18 18 H 1.08993 * 109.46911 * 299.03088 * 17 15 10 19 19 O 1.42908 * 109.46666 * 179.03784 * 17 15 10 20 20 C 1.50694 * 109.47115 * 59.03811 * 17 15 10 21 21 C 1.38242 * 120.00059 * 85.03814 * 20 17 15 22 22 C 1.38235 * 120.00026 * 179.78443 * 21 20 17 23 23 C 1.38237 * 119.99737 * 0.46178 * 22 21 20 24 24 C 1.38234 * 120.00302 * 359.77362 * 23 22 21 25 25 C 1.38232 * 119.99835 * 0.02562 * 24 23 22 26 26 H 0.97007 * 119.99731 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46943 * 58.47254 * 9 7 2 28 28 H 1.08995 * 109.47491 * 298.46804 * 9 7 2 29 29 H 1.09001 * 109.46149 * 305.85288 * 11 10 9 30 30 H 1.08999 * 109.46048 * 65.81616 * 11 10 9 31 31 H 1.09006 * 109.50057 * 60.75964 * 12 11 10 32 32 H 1.08998 * 109.50015 * 180.83509 * 12 11 10 33 33 H 1.08997 * 109.52512 * 177.55846 * 13 12 11 34 34 H 1.09004 * 109.52356 * 297.68593 * 13 12 11 35 35 H 1.09001 * 109.49891 * 182.39920 * 14 13 12 36 36 H 1.09000 * 109.51302 * 62.27343 * 14 13 12 37 37 H 0.96695 * 113.99901 * 299.99924 * 19 17 15 38 38 H 1.08000 * 119.99772 * 359.97438 * 21 20 17 39 39 H 1.07994 * 119.99929 * 180.24854 * 22 21 20 40 40 H 1.08002 * 119.99931 * 179.78209 * 23 22 21 41 41 H 1.07997 * 120.00378 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.00229 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2050 -3.6155 -0.0383 11 6 3.0384 -3.5551 -1.2459 12 6 3.9159 -4.8063 -1.3249 13 6 4.7988 -4.8843 -0.0763 14 6 3.9080 -4.8973 1.1689 15 6 3.0308 -3.6432 1.1757 16 1 3.6646 -2.7569 1.2042 17 6 2.1245 -3.6617 2.4084 18 1 1.5125 -2.7599 2.4228 19 8 2.9277 -3.7112 3.5894 20 6 1.2314 -4.8743 2.3570 21 6 1.6857 -6.0883 2.8376 22 6 0.8648 -7.1996 2.7946 23 6 -0.4070 -7.0993 2.2621 24 6 -0.8595 -5.8866 1.7770 25 6 -0.0401 -4.7743 1.8239 26 1 -0.4850 0.8401 0.0004 27 1 0.6035 -2.5449 -0.8763 28 1 0.6454 -2.5691 0.9030 29 1 2.3982 -3.5042 -2.1267 30 1 3.6719 -2.6690 -1.2060 31 1 3.2828 -5.6920 -1.3787 32 1 4.5450 -4.7541 -2.2135 33 1 5.3943 -5.7966 -0.1077 34 1 5.4603 -4.0185 -0.0433 35 1 4.5319 -4.9097 2.0626 36 1 3.2746 -5.7842 1.1542 37 1 3.4993 -4.4892 3.6438 38 1 2.6809 -6.1676 3.2496 39 1 1.2183 -8.1470 3.1737 40 1 -1.0471 -7.9684 2.2252 41 1 -1.8532 -5.8080 1.3614 42 1 -0.3935 -3.8268 1.4445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368996448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:12 Heat of formation + Delta-G solvation = -27.087099 kcal Electronic energy + Delta-G solvation = -22692.057802 eV Core-core repulsion = 19636.409449 eV Total energy + Delta-G solvation = -3055.648353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.94069 -37.93769 -36.08082 -33.78524 -32.00774 -31.33400 -30.48047 -29.68297 -26.88114 -25.60197 -23.91480 -22.22488 -21.85708 -21.35915 -20.38914 -18.85470 -17.30444 -16.36509 -15.78529 -15.29475 -15.26457 -14.57962 -14.28470 -14.11037 -13.91110 -13.57487 -13.26489 -12.85868 -12.80624 -12.52096 -12.43695 -12.12066 -11.78791 -11.41634 -11.14084 -11.01378 -10.86361 -10.73185 -10.70132 -10.51269 -10.39585 -10.10385 -9.90288 -9.73857 -9.46689 -9.30448 -8.48074 -8.44625 -8.18934 -7.18301 -6.05952 -4.15147 1.75860 1.83143 3.25981 3.33450 3.36626 4.18482 4.38876 4.70434 5.01458 5.11446 5.20149 5.23737 5.26640 5.27743 5.33845 5.43884 5.49120 5.74693 5.80836 5.84772 6.00013 6.02714 6.08562 6.21731 6.29669 6.31977 6.33544 6.39016 6.46721 6.60174 6.66028 6.73864 6.81891 6.89617 6.92068 7.12713 7.22261 7.39765 7.49607 7.84900 7.93891 8.05411 8.25735 8.27683 8.94729 9.52334 10.98376 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.007019 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.976984 B = 3988.104781 C = 4607.596723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.179 3.821 10 N -0.526 5.526 11 C 0.066 3.934 12 C -0.117 4.117 13 C -0.114 4.114 14 C -0.123 4.123 15 C 0.072 3.928 16 H 0.055 0.945 17 C 0.145 3.855 18 H 0.124 0.876 19 O -0.557 6.557 20 C -0.078 4.078 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.089 4.089 26 H 0.262 0.738 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.362 0.638 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 -12.798 2.926 13.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.054 3.946 10 N -0.252 5.252 11 C -0.063 4.063 12 C -0.155 4.155 13 C -0.152 4.152 14 C -0.161 4.161 15 C -0.037 4.037 16 H 0.073 0.927 17 C 0.087 3.913 18 H 0.141 0.859 19 O -0.361 6.361 20 C -0.078 4.078 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.107 4.107 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.209 0.791 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.313 -12.552 3.046 13.335 hybrid contribution 1.172 1.284 -0.298 1.763 sum 4.485 -11.268 2.748 12.436 Atomic orbital electron populations 1.69926 1.05939 1.26889 1.50048 1.24930 0.94749 0.99070 0.94821 0.86677 0.80037 0.83755 0.78084 1.20702 1.21113 1.19952 1.21745 0.93339 0.92079 1.51801 0.92576 1.19959 0.91083 0.85513 0.98080 1.62428 1.16745 1.46228 0.99773 1.21835 0.95239 0.95405 0.93812 1.21624 0.97726 0.99498 0.96639 1.21481 0.97549 1.00714 0.95426 1.21819 0.97724 0.99491 0.97068 1.21919 0.93992 0.96607 0.91227 0.92706 1.21102 0.89961 0.96526 0.83753 0.85879 1.86668 1.58584 1.48411 1.42475 1.20389 0.95135 0.95309 0.97000 1.20761 0.99178 0.92684 1.01116 1.20919 0.94614 0.97977 1.01105 1.21003 0.96207 0.97450 1.00313 1.21108 0.99705 0.93011 1.00064 1.21275 0.93138 0.99464 0.96801 0.92778 0.95026 0.94350 0.91671 0.94424 0.91936 0.92700 0.92839 0.92618 0.92819 0.90767 0.79073 0.87064 0.86923 0.86967 0.86537 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.55 -14.56 7.73 -34.44 -0.27 -14.83 16 8 H 0.06 1.50 5.84 -52.49 -0.31 1.19 16 9 C 0.18 4.30 4.15 -4.98 -0.02 4.28 16 10 N -0.53 -10.59 4.06 -228.11 -0.93 -11.52 16 11 C 0.07 1.25 5.04 -3.83 -0.02 1.23 16 12 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 13 C -0.11 -1.63 6.00 -26.61 -0.16 -1.79 16 14 C -0.12 -1.84 4.23 -26.65 -0.11 -1.96 16 15 C 0.07 1.34 1.52 -67.71 -0.10 1.23 16 16 H 0.06 1.18 6.88 -51.93 -0.36 0.82 16 17 C 0.15 2.69 2.80 -27.88 -0.08 2.61 16 18 H 0.12 2.71 6.22 -51.93 -0.32 2.39 16 19 O -0.56 -9.53 13.08 -35.23 -0.46 -9.99 16 20 C -0.08 -1.32 4.28 -104.62 -0.45 -1.77 16 21 C -0.12 -1.72 7.25 -39.58 -0.29 -2.01 16 22 C -0.13 -1.71 10.05 -39.58 -0.40 -2.10 16 23 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 25 C -0.09 -1.56 8.87 -39.58 -0.35 -1.91 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.96 3.63 -51.93 -0.19 0.77 16 29 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 30 H 0.04 0.78 6.70 -51.93 -0.35 0.43 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.69 6.81 -51.93 -0.35 0.34 16 36 H 0.07 1.12 5.86 -51.93 -0.30 0.82 16 37 H 0.36 4.77 5.67 45.56 0.26 5.02 16 38 H 0.11 1.36 6.22 -52.49 -0.33 1.03 16 39 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.13 2.58 5.76 -52.49 -0.30 2.28 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -28.52 315.78 -9.70 -38.22 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.49 Total: 8.52 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -3.30 Total: -21.65 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.19 Total: -36.11 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.46 Total: -9.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.52 -9.70 -38.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368996448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.137 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds